Wall clock time and date at job start Tue Mar 31 2020 05:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38312 * 119.89579 * 2 1 4 4 N 1.32148 * 120.10587 * 180.02562 * 3 2 1 5 5 C 1.32787 * 119.91084 * 359.97438 * 4 3 2 6 6 N 1.38825 * 120.09621 * 179.97438 * 5 4 3 7 7 C 1.36895 * 120.00225 * 96.38333 * 6 5 4 8 8 H 1.07998 * 120.00104 * 146.44273 * 7 6 5 9 9 C 1.38822 * 119.99755 * 326.43218 * 7 6 5 10 10 N 1.31565 * 119.99865 * 152.65299 * 9 7 6 11 11 Si 1.86803 * 120.00329 * 332.65430 * 9 7 6 12 12 H 1.48502 * 109.46933 * 95.02513 * 11 9 7 13 13 H 1.48492 * 109.47267 * 215.02641 * 11 9 7 14 14 H 1.48501 * 109.47065 * 335.02958 * 11 9 7 15 15 C 1.46500 * 119.99893 * 276.37779 * 6 5 4 16 16 C 1.50701 * 109.47359 * 95.35236 * 15 6 5 17 17 C 1.38237 * 119.99640 * 264.47025 * 16 15 6 18 18 C 1.38241 * 119.99586 * 179.76480 * 17 16 15 19 19 C 1.38231 * 119.99981 * 0.50190 * 18 17 16 20 20 C 1.38235 * 120.00088 * 359.75095 * 19 18 17 21 21 C 1.38231 * 120.00064 * 84.73695 * 16 15 6 22 22 C 1.39365 * 119.80715 * 0.02562 * 5 4 3 23 23 C 1.50699 * 120.05704 * 179.97438 * 22 5 4 24 24 N 1.31950 * 119.88409 * 359.97438 * 22 5 4 25 25 H 1.09004 * 109.46752 * 269.97673 * 1 2 3 26 26 H 1.08995 * 109.47192 * 29.98271 * 1 2 3 27 27 H 1.09003 * 109.46402 * 149.98085 * 1 2 3 28 28 H 1.07993 * 119.94657 * 0.02562 * 3 2 1 29 29 H 0.96996 * 119.99490 * 180.02562 * 10 9 7 30 30 H 1.09005 * 109.47367 * 215.34996 * 15 6 5 31 31 H 1.09002 * 109.47319 * 335.35293 * 15 6 5 32 32 H 1.07996 * 120.00305 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.99875 * 180.23069 * 18 17 16 34 34 H 1.07999 * 120.00401 * 179.72316 * 19 18 17 35 35 H 1.08003 * 120.00315 * 179.97438 * 20 19 18 36 36 H 1.08004 * 120.00401 * 0.02562 * 21 16 15 37 37 H 1.08994 * 109.47275 * 272.19426 * 23 22 5 38 38 H 1.08997 * 109.46697 * 32.19584 * 23 22 5 39 39 H 1.09003 * 109.46711 * 152.19619 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1964 1.1991 0.0000 4 7 3.5179 1.2039 -0.0005 5 6 4.1843 0.0553 -0.0005 6 7 5.5725 0.0559 -0.0016 7 6 6.2580 -0.0750 1.1761 8 1 7.2032 -0.5971 1.1956 9 6 5.7382 0.4634 2.3453 10 7 6.0455 -0.0695 3.5083 11 14 4.6024 1.9444 2.2674 12 1 3.1900 1.4858 2.2707 13 1 4.8428 2.8151 3.4460 14 1 4.8715 2.7097 1.0235 15 6 6.3040 0.1966 -1.2631 16 6 6.6691 1.6435 -1.4734 17 6 5.8598 2.4553 -2.2460 18 6 6.1922 3.7838 -2.4350 19 6 7.3393 4.2978 -1.8599 20 6 8.1514 3.4846 -1.0916 21 6 7.8163 2.1575 -0.8984 22 6 3.4859 -1.1507 -0.0005 23 6 4.2365 -2.4575 -0.0011 24 7 2.1664 -1.1464 0.0000 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3632 -0.8899 -0.5142 28 1 1.6539 2.1328 0.0004 29 1 5.6819 0.3065 4.3252 30 1 7.2119 -0.4055 -1.2258 31 1 5.6762 -0.1431 -2.0869 32 1 4.9661 2.0526 -2.6992 33 1 5.5580 4.4190 -3.0355 34 1 7.6014 5.3345 -2.0112 35 1 9.0479 3.8860 -0.6426 36 1 8.4511 1.5221 -0.2986 37 1 4.4512 -2.7527 -1.0281 38 1 5.1717 -2.3395 0.5461 39 1 3.6293 -3.2254 0.4783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166993907.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:38 Heat of formation + Delta-G solvation = 85.326174 kcal Electronic energy + Delta-G solvation = -22609.210061 eV Core-core repulsion = 19517.125881 eV Total energy + Delta-G solvation = -3092.084180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.15706 -40.03886 -37.89442 -35.40741 -34.27832 -33.96047 -31.94248 -31.64375 -29.84587 -28.01431 -27.65404 -25.15553 -23.78904 -23.34199 -22.85736 -21.76088 -19.96447 -18.79269 -17.76223 -17.27761 -16.96947 -16.10168 -15.99053 -15.86226 -15.76027 -15.43368 -14.71085 -14.63594 -14.17151 -14.09091 -13.99834 -13.76922 -13.45224 -13.43540 -13.23061 -13.01395 -12.90291 -12.62597 -12.56543 -12.39754 -11.93104 -11.89811 -11.70490 -11.24384 -10.81624 -10.07390 -9.72998 -9.68186 -9.47432 -9.12254 -8.39433 -5.72001 -0.08666 0.17602 0.58757 0.64059 1.26437 1.35196 1.70766 2.35442 2.64826 2.76762 2.95457 3.14089 3.24803 3.67347 3.75311 4.03560 4.11947 4.15007 4.24737 4.30905 4.37034 4.44843 4.49178 4.72320 4.75840 4.76487 4.84299 4.85979 4.92686 4.98468 5.08867 5.24707 5.27958 5.29787 5.52978 5.67239 5.70640 5.79306 5.92826 5.99107 6.26579 6.41390 6.82728 6.97346 7.47266 7.76168 8.75291 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.007973 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.741609 B = 3510.793022 C = 3991.646338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.049 3.951 3 C 0.035 3.965 4 N -0.481 5.481 5 C 0.322 3.678 6 N -0.533 5.533 7 C -0.239 4.239 8 H 0.084 0.916 9 C 0.000 4.000 10 N -0.918 5.918 11 Si 0.934 3.066 12 H -0.307 1.307 13 H -0.338 1.338 14 H -0.246 1.246 15 C 0.178 3.822 16 C -0.102 4.102 17 C -0.114 4.114 18 C -0.133 4.133 19 C -0.134 4.134 20 C -0.136 4.136 21 C -0.114 4.114 22 C 0.074 3.926 23 C -0.081 4.081 24 N -0.453 5.453 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.181 0.819 29 H 0.261 0.739 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 3.044 -12.390 13.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.126 4.126 4 N -0.201 5.201 5 C 0.093 3.907 6 N -0.251 5.251 7 C -0.367 4.367 8 H 0.102 0.898 9 C -0.199 4.199 10 N -0.559 5.559 11 Si 0.769 3.231 12 H -0.237 1.237 13 H -0.270 1.270 14 H -0.171 1.171 15 C 0.055 3.945 16 C -0.104 4.104 17 C -0.133 4.133 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.133 4.133 22 C -0.070 4.070 23 C -0.139 4.139 24 N -0.171 5.171 25 H 0.101 0.899 26 H 0.122 0.878 27 H 0.103 0.897 28 H 0.198 0.802 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.152 0.848 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.110 3.003 -12.244 13.604 hybrid contribution -0.412 1.101 0.945 1.508 sum -5.522 4.104 -11.300 13.230 Atomic orbital electron populations 1.20686 0.84774 1.05067 1.03844 1.22772 1.00117 0.88868 0.97361 1.23816 0.89896 1.00403 0.98442 1.68418 1.09856 1.31759 1.10065 1.19063 0.87946 0.88500 0.95217 1.41701 0.97115 1.81683 1.04622 1.18655 1.05664 1.29148 0.83250 0.89827 1.25806 0.99559 0.99165 0.95409 1.69968 1.47628 1.39981 0.98342 0.85832 0.78015 0.83916 0.75308 1.23651 1.27029 1.17098 1.20340 0.96683 0.91137 0.86355 1.20752 0.94633 0.98782 0.96272 1.21006 0.98512 0.94636 0.99176 1.21323 0.97740 0.95149 1.00838 1.21354 0.95169 1.00459 0.98224 1.21390 1.00780 0.93797 0.99392 1.21151 0.97227 0.96307 0.98635 1.22916 0.90174 0.97801 0.96139 1.20524 0.99427 0.90456 1.03519 1.68103 1.08015 1.30025 1.10929 0.89940 0.87848 0.89726 0.80223 0.92961 0.89998 0.91372 0.87299 0.84530 0.83963 0.84775 0.86805 0.88768 0.90445 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.91 10.19 71.24 0.73 -1.19 16 2 C 0.05 1.66 6.78 42.52 0.29 1.95 16 3 C 0.03 1.28 9.61 84.66 0.81 2.09 16 4 N -0.48 -21.32 6.02 -192.62 -1.16 -22.48 16 5 C 0.32 14.40 4.30 133.06 0.57 14.97 16 6 N -0.53 -24.02 1.58 -521.59 -0.82 -24.84 16 7 C -0.24 -12.56 8.77 84.04 0.74 -11.83 16 8 H 0.08 4.58 8.06 -2.91 -0.02 4.56 16 9 C 0.00 0.02 5.26 84.87 0.45 0.47 16 10 N -0.92 -56.06 13.96 21.65 0.30 -55.76 16 11 Si 0.93 50.85 23.95 68.60 1.64 52.49 16 12 H -0.31 -16.77 5.85 99.48 0.58 -16.19 16 13 H -0.34 -19.23 7.11 99.48 0.71 -18.52 16 14 H -0.25 -13.52 6.61 99.48 0.66 -12.87 16 15 C 0.18 6.67 5.79 85.63 0.50 7.17 16 16 C -0.10 -3.82 5.43 -19.87 -0.11 -3.93 16 17 C -0.11 -3.96 9.68 22.27 0.22 -3.74 16 18 C -0.13 -4.02 10.05 22.27 0.22 -3.80 16 19 C -0.13 -3.91 10.05 22.27 0.22 -3.68 16 20 C -0.14 -4.35 10.05 22.27 0.22 -4.13 16 21 C -0.11 -4.22 9.72 22.27 0.22 -4.01 16 22 C 0.07 3.08 6.81 42.81 0.29 3.38 16 23 C -0.08 -2.92 9.92 71.24 0.71 -2.22 16 24 N -0.45 -17.48 10.34 -170.85 -1.77 -19.25 16 25 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.10 1.66 8.08 -2.39 -0.02 1.64 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.18 5.28 8.06 -2.91 -0.02 5.26 16 29 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.08 2.86 8.06 -2.38 -0.02 2.84 16 31 H 0.07 2.29 7.91 -2.39 -0.02 2.28 16 32 H 0.11 3.63 8.06 -2.91 -0.02 3.60 16 33 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 34 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 35 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 36 H 0.11 4.28 8.06 -2.91 -0.02 4.25 16 37 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.08 3.16 6.63 -2.39 -0.02 3.15 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -69.99 325.78 5.13 -64.85 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.86 Total: 13.49 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 6.07 Total: -8.50 kcal Atomic # 7 Polarization: -118.88 SS G_CDS: -3.45 Total: -122.33 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 1.64 Total: 52.49 kcal Total: -69.99 5.13 -64.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993907.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.181 kcal (2) G-P(sol) polarization free energy of solvation -69.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds