Wall clock time and date at job start Tue Mar 31 2020 05:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36361 * 120.08037 * 2 1 4 4 C 1.39544 * 120.15842 * 179.97438 * 3 2 1 5 5 N 1.38857 * 119.83683 * 180.02562 * 4 3 2 6 6 C 1.46510 * 119.99628 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.46946 * 180.02562 * 6 5 4 8 8 C 1.38883 * 120.74942 * 269.72269 * 7 6 5 9 9 C 1.38021 * 119.33246 * 179.75152 * 8 7 6 10 10 N 1.31978 * 120.85201 * 0.53785 * 9 8 7 11 11 C 1.32392 * 121.62629 * 359.73498 * 10 9 8 12 12 N 1.38993 * 119.70813 * 180.02562 * 11 10 9 13 13 C 1.38294 * 120.74564 * 90.00301 * 7 6 5 14 14 C 1.39584 * 120.31815 * 0.04319 * 4 3 2 15 15 C 1.36325 * 120.16328 * 359.95424 * 14 4 3 16 16 C 1.40867 * 120.08389 * 179.97438 * 2 1 3 17 17 C 1.41140 * 120.15355 * 359.74444 * 16 2 1 18 18 H 1.07994 * 120.00308 * 333.65901 * 17 16 2 19 19 C 1.39867 * 119.99638 * 153.65271 * 17 16 2 20 20 N 1.30896 * 120.00256 * 344.01837 * 19 17 16 21 21 Si 1.86800 * 119.99726 * 164.01933 * 19 17 16 22 22 H 1.48500 * 109.47415 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46995 * 120.00003 * 21 19 17 24 24 H 1.48498 * 109.47266 * 239.99703 * 21 19 17 25 25 H 1.08999 * 109.47543 * 270.02070 * 1 2 3 26 26 H 1.09002 * 109.47181 * 30.02335 * 1 2 3 27 27 H 1.09005 * 109.47016 * 150.02443 * 1 2 3 28 28 H 1.07999 * 119.91554 * 359.97278 * 3 2 1 29 29 H 0.96997 * 120.00448 * 0.02562 * 5 4 3 30 30 H 1.08992 * 109.47502 * 300.00257 * 6 5 4 31 31 H 1.09000 * 109.46591 * 60.00579 * 6 5 4 32 32 H 1.07999 * 120.33408 * 0.02562 * 8 7 6 33 33 H 1.08002 * 119.57455 * 180.29330 * 9 8 7 34 34 H 0.96999 * 120.00194 * 179.97438 * 12 11 10 35 35 H 0.97002 * 120.00392 * 359.97438 * 12 11 10 36 36 H 1.07992 * 120.45607 * 359.97438 * 13 7 6 37 37 H 1.08000 * 119.92235 * 180.02562 * 14 4 3 38 38 H 1.08002 * 120.08207 * 180.02562 * 15 14 4 39 39 H 0.97007 * 120.00482 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1800 0.0000 4 6 3.5859 1.1819 0.0005 5 7 4.2751 2.3873 0.0011 6 6 5.7402 2.3934 0.0022 7 6 6.2366 3.8163 0.0032 8 6 6.4768 4.4854 -1.1898 9 6 6.9262 5.7899 -1.1548 10 7 7.1391 6.4018 -0.0050 11 6 6.9272 5.7964 1.1532 12 7 7.1641 6.4789 2.3407 13 6 6.4686 4.4832 1.1923 14 6 4.2921 -0.0221 0.0002 15 6 3.6221 -1.2093 0.0002 16 6 2.2131 -1.2189 0.0005 17 6 1.5125 -2.4441 0.0065 18 1 0.5184 -2.4957 0.4255 19 6 2.1056 -3.5914 -0.5303 20 7 3.1532 -3.4840 -1.3077 21 14 1.4026 -5.2770 -0.1378 22 1 0.2262 -5.1270 0.7560 23 1 0.9850 -5.9446 -1.3969 24 1 2.4373 -6.0996 0.5389 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6504 2.1152 -0.0004 29 1 3.7866 3.2253 0.0014 30 1 6.1050 1.8811 0.8924 31 1 6.1062 1.8811 -0.8876 32 1 6.3095 3.9913 -2.1355 33 1 7.1098 6.3155 -2.0803 34 1 7.0099 6.0396 3.1916 35 1 7.4836 7.3945 2.3184 36 1 6.2961 3.9917 2.1383 37 1 5.3721 -0.0132 0.0010 38 1 4.1699 -2.1401 0.0004 39 1 3.5648 -4.2798 -1.6797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167616301.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:02 Heat of formation + Delta-G solvation = 53.217741 kcal Electronic energy + Delta-G solvation = -20615.089395 eV Core-core repulsion = 17521.612889 eV Total energy + Delta-G solvation = -3093.476506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.28925 -38.12628 -35.85098 -34.65039 -33.40997 -32.28646 -30.76269 -29.29348 -28.87340 -26.67259 -25.43338 -23.87715 -23.27984 -21.70108 -20.85880 -19.12956 -17.53339 -17.24681 -17.07573 -16.00227 -15.73201 -15.12298 -15.06701 -14.78999 -14.25843 -14.17881 -13.75475 -13.22969 -13.03998 -12.72766 -12.46740 -12.23235 -11.86107 -11.67543 -11.45048 -11.10902 -11.05352 -10.97463 -10.88092 -10.72280 -10.42088 -9.73063 -9.56459 -9.51821 -9.22893 -9.19634 -8.47681 -7.98697 -7.32682 -6.61882 -6.36879 -4.02770 1.17668 1.35912 2.90004 3.07099 3.15877 3.20940 3.34868 3.36550 3.79663 4.06205 4.43624 4.57119 4.73761 4.78161 5.06798 5.19920 5.29309 5.61149 5.73926 5.79534 5.87371 5.93210 6.25563 6.28041 6.45381 6.46585 6.54668 6.72325 6.74295 6.91154 7.02893 7.09831 7.23695 7.27827 7.37106 7.61383 7.75594 7.82861 8.12144 8.15933 8.31196 8.48483 8.69045 8.79502 9.07662 9.16442 10.39377 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.032705 B = 0.003077 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.926597 B = 9096.973664 C = 9380.348116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.157 4.157 3 C -0.156 4.156 4 C 0.096 3.904 5 N -0.755 5.755 6 C 0.176 3.824 7 C -0.007 4.007 8 C -0.216 4.216 9 C 0.143 3.857 10 N -0.548 5.548 11 C 0.398 3.602 12 N -0.855 5.855 13 C -0.222 4.222 14 C -0.168 4.168 15 C -0.120 4.120 16 C 0.078 3.922 17 C -0.462 4.462 18 H 0.075 0.925 19 C 0.074 3.926 20 N -0.809 5.809 21 Si 0.901 3.099 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.275 1.275 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.385 0.615 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.133 0.867 33 H 0.155 0.845 34 H 0.407 0.593 35 H 0.402 0.598 36 H 0.131 0.869 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.855 13.153 3.386 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.159 4.159 3 C -0.178 4.178 4 C -0.001 4.001 5 N -0.391 5.391 6 C 0.051 3.949 7 C -0.016 4.016 8 C -0.239 4.239 9 C -0.014 4.014 10 N -0.267 5.267 11 C 0.161 3.839 12 N -0.399 5.399 13 C -0.247 4.247 14 C -0.190 4.190 15 C -0.140 4.140 16 C 0.075 3.925 17 C -0.493 4.493 18 H 0.093 0.907 19 C -0.141 4.141 20 N -0.437 5.437 21 Si 0.726 3.274 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.200 1.200 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.218 0.782 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.172 0.828 34 H 0.237 0.763 35 H 0.230 0.770 36 H 0.149 0.851 37 H 0.106 0.894 38 H 0.136 0.864 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.467 13.718 3.217 15.946 hybrid contribution -0.547 -1.163 0.372 1.338 sum 6.920 12.555 3.589 14.778 Atomic orbital electron populations 1.20416 0.93672 1.00517 0.99606 1.19306 0.94161 0.92715 1.09745 1.19648 0.91444 0.96455 1.10258 1.17310 0.90584 0.84855 1.07349 1.43757 1.02341 1.05493 1.87554 1.19932 0.83255 0.90255 1.01453 1.20221 0.92984 0.95930 0.92437 1.21833 1.06561 0.96623 0.98857 1.22356 0.92618 0.91735 0.94683 1.67141 1.23271 1.38776 0.97521 1.18329 0.90354 0.88457 0.86794 1.42168 1.75829 1.17490 1.04419 1.21288 1.09235 0.94714 0.99471 1.20078 0.97082 0.92009 1.09839 1.20914 0.94642 0.96040 1.02440 1.17362 0.91618 0.91627 0.91891 1.19391 1.02164 0.92548 1.35224 0.90696 1.25797 0.94441 1.00876 0.93002 1.69852 1.19373 1.30916 1.23511 0.86384 0.79879 0.82106 0.79003 1.18656 1.20315 1.20034 0.94033 0.94513 0.91908 0.89616 0.78228 0.92379 0.92078 0.84864 0.82790 0.76308 0.76959 0.85142 0.89447 0.86416 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.79 9.39 36.00 0.34 -1.45 16 2 C -0.16 -3.80 5.90 -104.31 -0.62 -4.42 16 3 C -0.16 -3.49 9.46 -39.77 -0.38 -3.86 16 4 C 0.10 2.06 6.67 -83.69 -0.56 1.51 16 5 N -0.76 -13.11 5.69 -59.67 -0.34 -13.45 16 6 C 0.18 2.62 5.06 -5.19 -0.03 2.59 16 7 C -0.01 -0.09 5.28 -104.36 -0.55 -0.65 16 8 C -0.22 -2.57 9.81 -39.42 -0.39 -2.96 16 9 C 0.14 1.62 11.17 -17.57 -0.20 1.42 16 10 N -0.55 -6.88 10.39 -12.44 -0.13 -7.00 16 11 C 0.40 4.65 7.75 -155.03 -1.20 3.45 16 12 N -0.86 -7.03 9.07 31.13 0.28 -6.74 16 13 C -0.22 -2.67 9.64 -39.22 -0.38 -3.05 16 14 C -0.17 -3.89 9.23 -39.77 -0.37 -4.26 16 15 C -0.12 -3.12 8.62 -39.26 -0.34 -3.46 16 16 C 0.08 2.07 5.56 -106.79 -0.59 1.48 16 17 C -0.46 -12.27 8.09 -37.87 -0.31 -12.58 16 18 H 0.07 1.93 6.89 -52.49 -0.36 1.56 16 19 C 0.07 1.88 5.16 -17.34 -0.09 1.79 16 20 N -0.81 -21.31 10.97 55.54 0.61 -20.70 16 21 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 22 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.06 1.35 6.79 -51.93 -0.35 1.00 16 28 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.39 6.24 8.46 -40.82 -0.35 5.89 16 30 H 0.06 0.87 7.89 -51.93 -0.41 0.46 16 31 H 0.06 0.94 7.88 -51.93 -0.41 0.53 16 32 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.41 2.44 8.82 -40.82 -0.36 2.08 16 35 H 0.40 2.82 8.95 -40.82 -0.37 2.45 16 36 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.09 1.84 6.68 -52.49 -0.35 1.49 16 38 H 0.12 3.17 6.23 -52.49 -0.33 2.85 16 39 H 0.27 6.64 8.30 -40.82 -0.34 6.30 16 LS Contribution 329.18 15.07 4.96 4.96 Total: -1.00 -29.48 329.18 -10.24 -39.72 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -4.95 Total: 13.59 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -5.65 Total: -24.45 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.42 Total: -47.89 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.48 -10.24 -39.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167616301.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.937 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds