Wall clock time and date at job start Tue Mar 31 2020 05:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36361 * 120.08037 * 2 1 4 4 C 1.39544 * 120.15842 * 179.97438 * 3 2 1 5 5 N 1.38857 * 119.83683 * 180.02562 * 4 3 2 6 6 C 1.46510 * 119.99628 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.46946 * 180.02562 * 6 5 4 8 8 C 1.38883 * 120.74942 * 269.72269 * 7 6 5 9 9 C 1.38021 * 119.33246 * 179.75152 * 8 7 6 10 10 N 1.31978 * 120.85201 * 0.53785 * 9 8 7 11 11 C 1.32392 * 121.62629 * 359.73498 * 10 9 8 12 12 N 1.38993 * 119.70813 * 180.02562 * 11 10 9 13 13 C 1.38294 * 120.74564 * 90.00301 * 7 6 5 14 14 C 1.39584 * 120.31815 * 0.04319 * 4 3 2 15 15 C 1.36325 * 120.16328 * 359.95424 * 14 4 3 16 16 C 1.40867 * 120.08389 * 179.97438 * 2 1 3 17 17 C 1.41140 * 120.15355 * 359.74444 * 16 2 1 18 18 H 1.07994 * 120.00308 * 333.65901 * 17 16 2 19 19 C 1.39867 * 119.99638 * 153.65271 * 17 16 2 20 20 N 1.30896 * 120.00256 * 344.01837 * 19 17 16 21 21 Si 1.86800 * 119.99726 * 164.01933 * 19 17 16 22 22 H 1.48500 * 109.47415 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46995 * 120.00003 * 21 19 17 24 24 H 1.48498 * 109.47266 * 239.99703 * 21 19 17 25 25 H 1.08999 * 109.47543 * 270.02070 * 1 2 3 26 26 H 1.09002 * 109.47181 * 30.02335 * 1 2 3 27 27 H 1.09005 * 109.47016 * 150.02443 * 1 2 3 28 28 H 1.07999 * 119.91554 * 359.97278 * 3 2 1 29 29 H 0.96997 * 120.00448 * 0.02562 * 5 4 3 30 30 H 1.08992 * 109.47502 * 300.00257 * 6 5 4 31 31 H 1.09000 * 109.46591 * 60.00579 * 6 5 4 32 32 H 1.07999 * 120.33408 * 0.02562 * 8 7 6 33 33 H 1.08002 * 119.57455 * 180.29330 * 9 8 7 34 34 H 0.96999 * 120.00194 * 179.97438 * 12 11 10 35 35 H 0.97002 * 120.00392 * 359.97438 * 12 11 10 36 36 H 1.07992 * 120.45607 * 359.97438 * 13 7 6 37 37 H 1.08000 * 119.92235 * 180.02562 * 14 4 3 38 38 H 1.08002 * 120.08207 * 180.02562 * 15 14 4 39 39 H 0.97007 * 120.00482 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1800 0.0000 4 6 3.5859 1.1819 0.0005 5 7 4.2751 2.3873 0.0011 6 6 5.7402 2.3934 0.0022 7 6 6.2366 3.8163 0.0032 8 6 6.4768 4.4854 -1.1898 9 6 6.9262 5.7899 -1.1548 10 7 7.1391 6.4018 -0.0050 11 6 6.9272 5.7964 1.1532 12 7 7.1641 6.4789 2.3407 13 6 6.4686 4.4832 1.1923 14 6 4.2921 -0.0221 0.0002 15 6 3.6221 -1.2093 0.0002 16 6 2.2131 -1.2189 0.0005 17 6 1.5125 -2.4441 0.0065 18 1 0.5184 -2.4957 0.4255 19 6 2.1056 -3.5914 -0.5303 20 7 3.1532 -3.4840 -1.3077 21 14 1.4026 -5.2770 -0.1378 22 1 0.2262 -5.1270 0.7560 23 1 0.9850 -5.9446 -1.3969 24 1 2.4373 -6.0996 0.5389 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6504 2.1152 -0.0004 29 1 3.7866 3.2253 0.0014 30 1 6.1050 1.8811 0.8924 31 1 6.1062 1.8811 -0.8876 32 1 6.3095 3.9913 -2.1355 33 1 7.1098 6.3155 -2.0803 34 1 7.0099 6.0396 3.1916 35 1 7.4836 7.3945 2.3184 36 1 6.2961 3.9917 2.1383 37 1 5.3721 -0.0132 0.0010 38 1 4.1699 -2.1401 0.0004 39 1 3.5648 -4.2798 -1.6797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167616301.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:01 Heat of formation + Delta-G solvation = 35.907539 kcal Electronic energy + Delta-G solvation = -20615.840022 eV Core-core repulsion = 17521.612889 eV Total energy + Delta-G solvation = -3094.227133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.20103 -39.86712 -37.24318 -35.65227 -34.99404 -33.67118 -32.48186 -30.53883 -30.12553 -28.31007 -26.91735 -25.62558 -24.18051 -22.95071 -22.47979 -20.82695 -18.98236 -18.37728 -18.29424 -17.26855 -16.82385 -16.77809 -16.33905 -15.95474 -15.56043 -15.17543 -15.14838 -14.65693 -14.53446 -14.44019 -14.03440 -13.67474 -13.47091 -13.02127 -12.90290 -12.77027 -12.73511 -12.67528 -12.35508 -12.12977 -11.74399 -11.38206 -11.12570 -11.02861 -10.62302 -10.46557 -10.20850 -9.16960 -8.78731 -8.48928 -8.12359 -5.95432 0.24514 0.45518 1.12184 1.21434 1.42096 1.55543 1.59882 2.29793 2.63361 2.78449 2.89236 3.18586 3.56656 3.81678 3.86531 4.18630 4.28785 4.34353 4.47416 4.51166 4.67098 4.72830 4.79059 4.88571 4.94761 4.99085 5.07427 5.16765 5.33365 5.35919 5.51386 5.53930 5.68280 5.76985 5.94107 5.98748 6.26636 6.37609 6.46626 6.57713 6.69895 6.90094 7.14530 7.15819 7.32667 7.33366 8.54061 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.032705 B = 0.003077 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.926597 B = 9096.973664 C = 9380.348116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.165 4.165 3 C -0.168 4.168 4 C 0.116 3.884 5 N -0.744 5.744 6 C 0.178 3.822 7 C -0.016 4.016 8 C -0.223 4.223 9 C 0.143 3.857 10 N -0.565 5.565 11 C 0.391 3.609 12 N -0.842 5.842 13 C -0.228 4.228 14 C -0.181 4.181 15 C -0.141 4.141 16 C 0.037 3.963 17 C -0.492 4.492 18 H 0.072 0.928 19 C 0.030 3.970 20 N -0.845 5.845 21 Si 0.972 3.028 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.270 1.270 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.113 0.887 29 H 0.394 0.606 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.140 0.860 33 H 0.182 0.818 34 H 0.418 0.582 35 H 0.409 0.591 36 H 0.139 0.861 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.860 14.904 3.786 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.167 4.167 3 C -0.190 4.190 4 C 0.017 3.983 5 N -0.379 5.379 6 C 0.054 3.946 7 C -0.024 4.024 8 C -0.246 4.246 9 C -0.013 4.013 10 N -0.284 5.284 11 C 0.153 3.847 12 N -0.386 5.386 13 C -0.254 4.254 14 C -0.203 4.203 15 C -0.162 4.162 16 C 0.034 3.966 17 C -0.524 4.524 18 H 0.090 0.910 19 C -0.181 4.181 20 N -0.474 5.474 21 Si 0.794 3.206 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.195 1.195 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.131 0.869 29 H 0.229 0.771 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.158 0.842 33 H 0.199 0.801 34 H 0.250 0.750 35 H 0.239 0.761 36 H 0.157 0.843 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.488 15.524 3.649 17.617 hybrid contribution -0.455 -1.459 0.274 1.553 sum 7.033 14.064 3.923 16.207 Atomic orbital electron populations 1.20405 0.91689 1.01084 1.00622 1.19756 0.95965 0.92598 1.08366 1.19954 0.91950 0.97009 1.10106 1.17412 0.90777 0.85806 1.04344 1.43779 1.03540 1.04405 1.86224 1.19952 0.81528 0.91942 1.01221 1.20042 0.94112 0.94864 0.93381 1.21945 1.06876 0.97031 0.98796 1.22799 0.91526 0.91587 0.95431 1.67233 1.23893 1.39234 0.98066 1.18538 0.90048 0.88574 0.87539 1.42169 1.74736 1.17727 1.04006 1.21375 1.09439 0.95037 0.99539 1.20204 0.97981 0.91861 1.10262 1.20855 0.94859 0.96266 1.04180 1.17705 0.92182 0.92834 0.93875 1.19576 1.02492 0.93691 1.36623 0.90973 1.26579 0.94783 1.04328 0.92450 1.69926 1.20813 1.32029 1.24625 0.85313 0.79132 0.77303 0.78844 1.18314 1.19652 1.19497 0.92681 0.92014 0.93190 0.86894 0.77147 0.92375 0.92441 0.84178 0.80138 0.75020 0.76106 0.84329 0.87902 0.88562 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.33 9.39 71.23 0.67 -2.66 16 2 C -0.16 -7.94 5.90 -19.66 -0.12 -8.06 16 3 C -0.17 -7.27 9.46 22.15 0.21 -7.06 16 4 C 0.12 4.86 6.67 38.67 0.26 5.12 16 5 N -0.74 -24.42 5.69 -342.70 -1.95 -26.37 16 6 C 0.18 5.03 5.06 85.63 0.43 5.47 16 7 C -0.02 -0.38 5.28 -19.70 -0.10 -0.48 16 8 C -0.22 -4.89 9.81 22.37 0.22 -4.67 16 9 C 0.14 2.91 11.17 84.62 0.95 3.85 16 10 N -0.56 -12.90 10.39 -193.26 -2.01 -14.91 16 11 C 0.39 8.30 7.75 133.07 1.03 9.33 16 12 N -0.84 -11.88 9.07 -55.43 -0.50 -12.38 16 13 C -0.23 -5.06 9.64 22.50 0.22 -4.84 16 14 C -0.18 -8.43 9.23 22.15 0.20 -8.23 16 15 C -0.14 -7.59 8.62 22.48 0.19 -7.40 16 16 C 0.04 2.01 5.56 -21.27 -0.12 1.89 16 17 C -0.49 -26.98 8.09 23.38 0.19 -26.80 16 18 H 0.07 3.82 6.89 -2.91 -0.02 3.80 16 19 C 0.03 1.56 5.16 85.23 0.44 2.00 16 20 N -0.85 -46.13 10.97 21.82 0.24 -45.89 16 21 Si 0.97 40.06 29.59 68.60 2.03 42.09 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 27 H 0.05 2.15 6.79 -2.38 -0.02 2.13 16 28 H 0.11 4.22 8.06 -2.91 -0.02 4.19 16 29 H 0.39 11.76 8.46 -92.71 -0.78 10.98 16 30 H 0.06 1.67 7.89 -2.39 -0.02 1.65 16 31 H 0.06 1.69 7.88 -2.39 -0.02 1.67 16 32 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.42 4.01 8.82 -92.71 -0.82 3.20 16 35 H 0.41 4.79 8.95 -92.71 -0.83 3.96 16 36 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.10 4.34 6.68 -2.91 -0.02 4.32 16 38 H 0.10 5.48 6.23 -2.91 -0.02 5.46 16 39 H 0.28 13.94 8.30 -92.70 -0.77 13.17 16 Total: -1.00 -64.26 329.18 1.15 -63.10 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: -1.33 Total: 36.89 kcal Atomic # 6 Polarization: -47.21 SS G_CDS: 4.67 Total: -42.54 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -4.22 Total: -99.55 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -64.26 1.15 -63.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167616301.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.010 kcal (2) G-P(sol) polarization free energy of solvation -64.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds