Wall clock time and date at job start Tue Mar 31 2020 05:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36358 * 119.92107 * 2 1 4 4 C 1.40865 * 119.83467 * 180.25116 * 3 2 1 5 5 C 1.41140 * 120.15380 * 179.72182 * 4 3 2 6 6 H 1.08002 * 119.99856 * 204.63208 * 5 4 3 7 7 C 1.39864 * 120.00225 * 24.62593 * 5 4 3 8 8 N 1.30908 * 119.99418 * 17.97054 * 7 5 4 9 9 Si 1.86797 * 120.00261 * 197.96657 * 7 5 4 10 10 H 1.48500 * 109.47071 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47162 * 120.00360 * 9 7 5 12 12 H 1.48506 * 109.47010 * 240.00656 * 9 7 5 13 13 C 1.40903 * 119.69118 * 359.74780 * 4 3 2 14 14 C 1.36322 * 119.83707 * 359.97438 * 13 4 3 15 15 C 1.39550 * 119.91635 * 179.74185 * 2 1 3 16 16 N 1.38857 * 119.84208 * 0.02574 * 15 2 1 17 17 C 1.46495 * 119.99873 * 179.72666 * 16 15 2 18 18 C 1.50709 * 109.47116 * 179.97438 * 17 16 15 19 19 C 1.38882 * 120.74508 * 270.28155 * 18 17 16 20 20 C 1.38021 * 119.32613 * 180.29961 * 19 18 17 21 21 N 1.31977 * 120.85652 * 359.68544 * 20 19 18 22 22 C 1.32399 * 121.62442 * 0.02562 * 21 20 19 23 23 N 1.38993 * 119.70719 * 180.02562 * 22 21 20 24 24 C 1.38295 * 120.74469 * 89.99957 * 18 17 16 25 25 H 1.09002 * 109.47169 * 270.26089 * 1 2 3 26 26 H 1.09002 * 109.47228 * 30.25453 * 1 2 3 27 27 H 1.08992 * 109.47356 * 150.25663 * 1 2 3 28 28 H 1.07995 * 120.07866 * 0.02562 * 3 2 1 29 29 H 0.96998 * 119.99398 * 179.97438 * 8 7 5 30 30 H 1.08004 * 120.08349 * 179.97438 * 13 4 3 31 31 H 1.07995 * 119.92511 * 179.97438 * 14 13 4 32 32 H 0.96999 * 119.99984 * 359.71218 * 16 15 2 33 33 H 1.08996 * 109.47676 * 59.99473 * 17 16 15 34 34 H 1.09001 * 109.47066 * 299.99060 * 17 16 15 35 35 H 1.07995 * 120.33537 * 0.02562 * 19 18 17 36 36 H 1.07994 * 119.57271 * 179.70225 * 20 19 18 37 37 H 0.97006 * 120.00018 * 179.97438 * 23 22 21 38 38 H 0.96999 * 119.99897 * 359.97438 * 23 22 21 39 39 H 1.08001 * 120.45347 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1818 0.0000 4 6 3.5958 1.1797 -0.0054 5 6 4.3066 2.3990 -0.0113 6 1 5.3116 2.4363 -0.4051 7 6 3.7095 3.5591 0.4926 8 7 2.6643 3.4700 1.2756 9 14 4.4036 5.2355 0.0483 10 1 5.5777 5.0643 -0.8447 11 1 3.3633 6.0327 -0.6499 12 1 4.8212 5.9421 1.2859 13 6 4.2919 -0.0454 -0.0053 14 6 3.5989 -1.2192 0.0005 15 6 2.2030 -1.2095 0.0054 16 7 1.5037 -2.4091 0.0103 17 6 2.2308 -3.6809 0.0100 18 6 1.2467 -4.8223 0.0164 19 6 0.7835 -5.3536 1.2131 20 6 -0.1127 -6.4029 1.1848 21 7 -0.5370 -6.9001 0.0383 22 6 -0.1234 -6.4173 -1.1232 23 7 -0.5966 -6.9710 -2.3070 24 6 0.7801 -5.3602 -1.1691 25 1 -0.3633 0.0047 1.0277 26 1 -0.3634 0.8877 -0.5178 27 1 -0.3633 -0.8922 -0.5098 28 1 1.6472 2.1171 0.0004 29 1 2.2504 4.2745 1.6254 30 1 5.3719 -0.0544 -0.0098 31 1 4.1309 -2.1590 0.0001 32 1 0.5337 -2.4050 0.0141 33 1 2.8606 -3.7396 0.8976 34 1 2.8538 -3.7430 -0.8823 35 1 1.1246 -4.9528 2.1561 36 1 -0.4718 -6.8223 2.1130 37 1 -0.2967 -6.6204 -3.1603 38 1 -1.2267 -7.7080 -2.2799 39 1 1.1157 -4.9678 -2.1177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167616708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:54 Heat of formation + Delta-G solvation = 54.630239 kcal Electronic energy + Delta-G solvation = -20745.436507 eV Core-core repulsion = 17652.021251 eV Total energy + Delta-G solvation = -3093.415256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.29772 -38.23966 -35.72522 -34.63021 -33.50270 -32.00271 -31.43148 -29.29830 -28.60449 -26.36370 -25.83233 -23.94862 -23.30100 -21.88761 -20.17822 -19.72387 -17.53766 -17.24115 -16.87025 -16.03613 -15.85997 -15.35609 -15.09619 -14.74704 -14.28562 -14.18545 -13.57630 -13.33338 -12.88066 -12.82979 -12.57710 -12.11882 -11.92122 -11.84244 -11.52700 -11.35843 -10.99996 -10.97505 -10.93546 -10.69266 -10.38250 -9.79624 -9.56835 -9.51234 -9.29857 -9.23176 -8.54102 -7.99149 -7.31560 -6.63965 -6.35796 -4.02746 1.17121 1.35391 2.89671 3.07473 3.15890 3.21245 3.34751 3.36167 3.79354 4.06192 4.43570 4.57212 4.72155 4.76417 5.06165 5.19129 5.28461 5.60293 5.73862 5.78464 5.86410 5.90511 6.00967 6.13338 6.31919 6.43234 6.45984 6.53981 6.59415 6.80926 7.09350 7.09851 7.26997 7.27605 7.31923 7.60099 7.69286 7.81322 8.11729 8.17205 8.35813 8.47361 8.66861 8.79898 9.07139 9.16120 10.37950 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.039110 B = 0.003066 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.755606 B = 9129.169814 C = 9245.714562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.135 4.135 3 C -0.120 4.120 4 C 0.077 3.923 5 C -0.466 4.466 6 H 0.073 0.927 7 C 0.074 3.926 8 N -0.806 5.806 9 Si 0.901 3.099 10 H -0.263 1.263 11 H -0.275 1.275 12 H -0.277 1.277 13 C -0.190 4.190 14 C -0.158 4.158 15 C 0.095 3.905 16 N -0.754 5.754 17 C 0.176 3.824 18 C -0.008 4.008 19 C -0.216 4.216 20 C 0.143 3.857 21 N -0.548 5.548 22 C 0.398 3.602 23 N -0.855 5.855 24 C -0.222 4.222 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.120 0.880 29 H 0.275 0.725 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.387 0.613 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.133 0.867 36 H 0.155 0.845 37 H 0.407 0.593 38 H 0.402 0.598 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.805 -14.881 -3.333 16.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C -0.140 4.140 4 C 0.074 3.926 5 C -0.497 4.497 6 H 0.091 0.909 7 C -0.141 4.141 8 N -0.434 5.434 9 Si 0.727 3.273 10 H -0.187 1.187 11 H -0.200 1.200 12 H -0.203 1.203 13 C -0.211 4.211 14 C -0.180 4.180 15 C -0.002 4.002 16 N -0.392 5.392 17 C 0.050 3.950 18 C -0.016 4.016 19 C -0.239 4.239 20 C -0.014 4.014 21 N -0.267 5.267 22 C 0.161 3.839 23 N -0.399 5.399 24 C -0.247 4.247 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.138 0.862 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.221 0.779 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.151 0.849 36 H 0.172 0.828 37 H 0.237 0.763 38 H 0.230 0.770 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.351 -15.493 -3.166 17.041 hybrid contribution 0.438 1.333 -0.386 1.455 sum -5.913 -14.160 -3.552 15.750 Atomic orbital electron populations 1.20469 0.94022 1.00197 1.00322 1.18866 0.93690 0.92389 1.08883 1.20827 0.94386 0.95638 1.03153 1.17484 0.91808 0.92065 0.91282 1.19391 1.01196 0.92459 1.36685 0.90932 1.25794 0.94450 1.00956 0.92862 1.69869 1.19422 1.30564 1.23514 0.86381 0.79883 0.81966 0.79118 1.18650 1.19991 1.20290 1.20548 0.97470 0.92316 1.10744 1.19846 0.91659 0.96958 1.09543 1.17116 0.90722 0.84176 1.08159 1.43843 1.06687 1.01245 1.87415 1.19931 0.92141 0.81548 1.01332 1.20225 0.94321 0.94632 0.92451 1.21827 1.02669 1.00567 0.98808 1.22356 0.92214 0.92057 0.94753 1.67145 1.29348 1.32687 0.97503 1.18329 0.89589 0.89195 0.86814 1.42171 1.52441 1.40830 1.04455 1.21285 1.03483 1.00449 0.99497 0.93094 0.92812 0.93964 0.86240 0.91405 0.89144 0.89415 0.77881 0.92177 0.92439 0.84872 0.82791 0.76307 0.76954 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.55 36.01 0.34 -1.41 16 2 C -0.13 -3.08 5.86 -104.81 -0.61 -3.70 16 3 C -0.12 -3.12 8.27 -39.27 -0.32 -3.44 16 4 C 0.08 2.06 5.57 -106.79 -0.60 1.46 16 5 C -0.47 -12.64 9.03 -37.87 -0.34 -12.99 16 6 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 7 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 8 N -0.81 -21.34 10.96 55.54 0.61 -20.73 16 9 Si 0.90 19.22 29.60 -169.99 -5.03 14.19 16 10 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 11 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 13 C -0.19 -4.71 9.74 -39.26 -0.38 -5.09 16 14 C -0.16 -3.52 9.23 -39.77 -0.37 -3.89 16 15 C 0.10 2.05 6.65 -83.69 -0.56 1.49 16 16 N -0.75 -13.08 5.59 -59.67 -0.33 -13.41 16 17 C 0.18 2.55 5.06 -5.19 -0.03 2.53 16 18 C -0.01 -0.10 5.28 -104.36 -0.55 -0.65 16 19 C -0.22 -2.54 9.81 -39.42 -0.39 -2.93 16 20 C 0.14 1.61 11.17 -17.57 -0.20 1.41 16 21 N -0.55 -6.83 10.39 -12.44 -0.13 -6.96 16 22 C 0.40 4.62 7.75 -155.03 -1.20 3.41 16 23 N -0.86 -6.96 9.07 31.13 0.28 -6.68 16 24 C -0.22 -2.65 9.64 -39.23 -0.38 -3.02 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.98 8.08 -51.93 -0.42 0.57 16 27 H 0.04 0.70 6.53 -51.93 -0.34 0.36 16 28 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 29 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 30 H 0.09 2.12 8.06 -52.48 -0.42 1.69 16 31 H 0.09 1.73 6.68 -52.49 -0.35 1.38 16 32 H 0.39 6.39 6.42 -40.82 -0.26 6.13 16 33 H 0.06 0.88 7.89 -51.93 -0.41 0.48 16 34 H 0.06 0.83 7.89 -51.93 -0.41 0.43 16 35 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.41 2.41 8.82 -40.82 -0.36 2.05 16 38 H 0.40 2.80 8.95 -40.82 -0.37 2.43 16 39 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 328.69 15.07 4.95 4.95 Total: -1.00 -29.75 328.69 -10.22 -39.97 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -4.90 Total: 13.66 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -5.67 Total: -24.99 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.43 Total: -47.78 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.75 -10.22 -39.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167616708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.601 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds