Wall clock time and date at job start Tue Mar 31 2020 05:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48499 * 109.46842 * 90.00095 * 3 2 1 5 5 H 1.48490 * 109.47135 * 210.00214 * 3 2 1 6 6 H 1.48508 * 109.47093 * 330.00413 * 3 2 1 7 7 C 1.37878 * 120.00081 * 180.02562 * 2 1 3 8 8 C 1.51267 * 120.84849 * 359.97438 * 7 2 1 9 9 C 1.53227 * 108.54110 * 231.32791 * 8 7 2 10 10 C 1.52964 * 109.40125 * 305.37702 * 9 8 7 11 11 H 1.09000 * 109.41405 * 303.48876 * 10 9 8 12 12 N 1.46500 * 109.41079 * 183.70184 * 10 9 8 13 13 C 1.31441 * 120.00339 * 114.90998 * 12 10 9 14 14 C 1.47012 * 121.40641 * 5.77185 * 13 12 10 15 15 C 1.34387 * 119.42658 * 179.97438 * 14 13 12 16 16 N 1.36231 * 122.55783 * 359.97438 * 15 14 13 17 17 H 0.97004 * 118.87250 * 180.02562 * 16 15 14 18 18 C 1.37428 * 122.25541 * 0.02562 * 16 15 14 19 19 C 1.39427 * 121.77328 * 180.02562 * 18 16 15 20 20 C 1.37814 * 118.76135 * 179.32189 * 19 18 16 21 21 N 1.32203 * 121.53633 * 0.64102 * 20 19 18 22 22 C 1.31867 * 122.17277 * 359.54621 * 21 20 19 23 23 C 1.38941 * 120.00101 * 0.02562 * 22 21 20 24 24 C 1.52955 * 109.81826 * 63.59881 * 10 9 8 25 25 C 1.51262 * 120.85153 * 179.71692 * 7 2 1 26 26 H 0.96994 * 120.00265 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.63223 * 351.04393 * 8 7 2 28 28 H 1.09002 * 109.62549 * 111.42309 * 8 7 2 29 29 H 1.09006 * 109.48060 * 65.35121 * 9 8 7 30 30 H 1.08995 * 109.48725 * 185.39311 * 9 8 7 31 31 H 1.08000 * 120.28666 * 359.95289 * 14 13 12 32 32 H 1.07997 * 118.71951 * 179.97438 * 15 14 13 33 33 H 1.08000 * 120.61525 * 359.97438 * 19 18 16 34 34 H 1.08005 * 119.22691 * 180.16461 * 20 19 18 35 35 H 1.07998 * 120.00257 * 180.02562 * 22 21 20 36 36 H 1.08998 * 109.48408 * 56.37672 * 24 10 9 37 37 H 1.09004 * 109.48061 * 176.40983 * 24 10 9 38 38 H 1.08994 * 109.63158 * 248.38715 * 25 7 2 39 39 H 1.09003 * 109.62762 * 8.96124 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5466 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 6 1.2678 -2.5151 -0.0005 9 6 1.8236 -3.3831 1.1332 10 6 3.3406 -3.5074 0.9810 11 1 3.5740 -3.9122 -0.0037 12 7 3.8612 -4.4084 2.0123 13 6 4.4092 -5.5528 1.6694 14 6 4.6297 -5.9046 0.2591 15 6 5.1938 -7.0855 -0.0464 16 7 5.5763 -7.9831 0.9044 17 1 5.9789 -8.8198 0.6236 18 6 5.4112 -7.7439 2.2476 19 6 5.8068 -8.6696 3.2122 20 6 5.6249 -8.3596 4.5427 21 7 5.0759 -7.2170 4.9177 22 6 4.6806 -6.3088 4.0471 23 6 4.8354 -6.5380 2.6855 24 6 3.9914 -2.1315 1.1324 25 6 3.5170 -1.2165 -0.0070 26 1 -0.4850 0.8400 0.0004 27 1 0.2037 -2.3410 0.1597 28 1 1.4166 -3.0173 -0.9565 29 1 1.5912 -2.9206 2.0926 30 1 1.3713 -4.3737 1.0880 31 1 4.3404 -5.2202 -0.5246 32 1 5.3500 -7.3325 -1.0861 33 1 6.2572 -9.6075 2.9224 34 1 5.9312 -9.0701 5.2963 35 1 4.2366 -5.3869 4.3924 36 1 3.7077 -1.6986 2.0917 37 1 5.0756 -2.2352 1.0867 38 1 3.8735 -1.6020 -0.9621 39 1 3.8989 -0.2076 0.1493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167841090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:51 Heat of formation + Delta-G solvation = 62.372970 kcal Electronic energy + Delta-G solvation = -21452.778111 eV Core-core repulsion = 18359.698605 eV Total energy + Delta-G solvation = -3093.079506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.95723 -38.12384 -37.30531 -34.88825 -32.35247 -31.87102 -30.80756 -29.75925 -29.44391 -27.07499 -24.32308 -24.06783 -22.39583 -21.42625 -20.94175 -19.40626 -18.59815 -18.30082 -17.03705 -16.06958 -15.52490 -15.25265 -14.84101 -14.72414 -14.41586 -14.21798 -13.43033 -13.05110 -13.03809 -12.95105 -12.89038 -12.30004 -12.21811 -11.78972 -11.46607 -11.27375 -10.84946 -10.72190 -10.41307 -10.32836 -9.91169 -9.82517 -9.62070 -9.49758 -9.00419 -8.89277 -8.58148 -8.56121 -8.40834 -7.29067 -6.06087 -3.96511 0.76187 1.02230 1.79872 2.83053 3.17118 3.30483 3.38584 3.39992 4.01200 4.21267 4.40277 4.42059 4.53730 4.68683 4.84386 5.00310 5.17940 5.29999 5.46947 5.51641 5.68852 5.83097 5.93159 5.97871 6.07799 6.25165 6.46891 6.58587 6.62365 6.77660 6.85645 6.92386 6.98707 7.04435 7.09432 7.13714 7.22656 7.46894 7.69222 7.79901 7.87059 7.97792 8.36563 8.43975 9.00831 9.58660 11.03698 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.030494 B = 0.003849 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.986495 B = 7272.877219 C = 7560.065480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.075 3.925 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.290 1.290 7 C -0.487 4.487 8 C 0.012 3.988 9 C -0.091 4.091 10 C 0.081 3.919 11 H 0.045 0.955 12 N -0.509 5.509 13 C 0.214 3.786 14 C -0.243 4.243 15 C 0.115 3.885 16 N -0.631 5.631 17 H 0.413 0.587 18 C 0.226 3.774 19 C -0.237 4.237 20 C 0.135 3.865 21 N -0.518 5.518 22 C 0.179 3.821 23 C -0.144 4.144 24 C -0.091 4.091 25 C -0.014 4.014 26 H 0.264 0.736 27 H 0.059 0.941 28 H 0.001 0.999 29 H 0.057 0.943 30 H 0.025 0.975 31 H 0.148 0.852 32 H 0.155 0.845 33 H 0.137 0.863 34 H 0.156 0.844 35 H 0.173 0.827 36 H 0.059 0.941 37 H 0.028 0.972 38 H 0.015 0.985 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.489 -18.419 1.860 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.217 1.217 7 C -0.506 4.506 8 C -0.026 4.026 9 C -0.129 4.129 10 C -0.028 4.028 11 H 0.063 0.937 12 N -0.219 5.219 13 C 0.029 3.971 14 C -0.270 4.270 15 C -0.009 4.009 16 N -0.244 5.244 17 H 0.247 0.753 18 C 0.115 3.885 19 C -0.262 4.262 20 C -0.021 4.021 21 N -0.229 5.229 22 C 0.020 3.980 23 C -0.151 4.151 24 C -0.130 4.130 25 C -0.052 4.052 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.020 0.980 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.166 0.834 32 H 0.172 0.828 33 H 0.155 0.845 34 H 0.173 0.827 35 H 0.190 0.810 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.033 0.967 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 11.872 -17.352 3.439 21.304 hybrid contribution 0.819 0.137 -1.998 2.163 sum 12.692 -17.215 1.441 21.436 Atomic orbital electron populations 1.69836 1.06154 1.26879 1.49982 1.24845 0.94715 0.98547 0.94587 0.86663 0.79884 0.83330 0.78507 1.20335 1.19263 1.21669 1.20028 0.89301 0.91492 1.49760 1.19380 0.98680 0.92914 0.91649 1.21635 0.91398 0.97860 1.02004 1.21822 0.96624 0.92737 0.91642 0.93718 1.72632 1.09709 1.02162 1.37379 1.20965 0.95226 0.91798 0.89097 1.22557 1.08426 0.98212 0.97836 1.21200 0.96434 0.90200 0.93050 1.40973 1.59986 1.20606 1.02826 0.75256 1.17873 0.93088 0.93498 0.84086 1.21497 1.10129 1.01005 0.93544 1.22570 0.92301 0.93545 0.93677 1.67848 1.13392 1.02777 1.38837 1.22919 0.90745 0.97132 0.87212 1.19295 1.06646 0.93917 0.95241 1.21612 0.96001 0.94147 1.01192 1.19827 0.96804 0.95070 0.93512 0.92625 0.92266 0.98045 0.92451 0.95575 0.83417 0.82801 0.84523 0.82666 0.81035 0.92266 0.95351 0.96665 0.95003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 12.73 55.43 0.71 -25.41 16 2 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 3 Si 0.89 21.55 27.28 -169.99 -4.64 16.91 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.27 -6.28 6.45 56.52 0.36 -5.92 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.49 -13.15 5.51 -98.93 -0.54 -13.69 16 8 C 0.01 0.30 5.97 -27.49 -0.16 0.14 16 9 C -0.09 -2.09 5.54 -26.63 -0.15 -2.23 16 10 C 0.08 1.70 2.62 -67.97 -0.18 1.52 16 11 H 0.04 0.91 5.24 -51.93 -0.27 0.64 16 12 N -0.51 -9.85 9.64 -49.22 -0.47 -10.33 16 13 C 0.21 3.55 6.97 -80.57 -0.56 2.98 16 14 C -0.24 -3.35 9.41 -37.39 -0.35 -3.70 16 15 C 0.12 1.09 11.06 -16.96 -0.19 0.91 16 16 N -0.63 -5.28 5.31 -10.76 -0.06 -5.33 16 17 H 0.41 1.83 8.79 -40.82 -0.36 1.47 16 18 C 0.23 2.51 6.69 -84.01 -0.56 1.95 16 19 C -0.24 -2.09 10.01 -39.29 -0.39 -2.48 16 20 C 0.14 1.35 11.14 -17.55 -0.20 1.16 16 21 N -0.52 -6.93 10.35 -13.09 -0.14 -7.06 16 22 C 0.18 2.61 10.85 -17.28 -0.19 2.42 16 23 C -0.14 -2.08 5.89 -104.83 -0.62 -2.70 16 24 C -0.09 -2.01 5.55 -26.42 -0.15 -2.16 16 25 C -0.01 -0.34 5.62 -27.28 -0.15 -0.49 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.06 1.66 7.07 -51.93 -0.37 1.30 16 28 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.15 2.12 5.92 -52.49 -0.31 1.81 16 32 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.16 1.04 8.06 -52.48 -0.42 0.61 16 35 H 0.17 2.59 7.76 -52.49 -0.41 2.18 16 36 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.03 0.76 4.77 -51.93 -0.25 0.51 16 LS Contribution 315.14 15.07 4.75 4.75 Total: -1.00 -32.39 315.14 -9.28 -41.67 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.94 Total: -0.83 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -4.49 Total: -14.38 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.04 Total: -48.13 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.64 Total: 16.91 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.39 -9.28 -41.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.046 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds