Wall clock time and date at job start Tue Mar 31 2020 05:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48499 * 109.46842 * 90.00095 * 3 2 1 5 5 H 1.48490 * 109.47135 * 210.00214 * 3 2 1 6 6 H 1.48508 * 109.47093 * 330.00413 * 3 2 1 7 7 C 1.37878 * 120.00081 * 180.02562 * 2 1 3 8 8 C 1.51267 * 120.84849 * 359.97438 * 7 2 1 9 9 C 1.53227 * 108.54110 * 231.32791 * 8 7 2 10 10 C 1.52964 * 109.40125 * 305.37702 * 9 8 7 11 11 H 1.09000 * 109.41405 * 303.48876 * 10 9 8 12 12 N 1.46500 * 109.41079 * 183.70184 * 10 9 8 13 13 C 1.31441 * 120.00339 * 114.90998 * 12 10 9 14 14 C 1.47012 * 121.40641 * 5.77185 * 13 12 10 15 15 C 1.34387 * 119.42658 * 179.97438 * 14 13 12 16 16 N 1.36231 * 122.55783 * 359.97438 * 15 14 13 17 17 H 0.97004 * 118.87250 * 180.02562 * 16 15 14 18 18 C 1.37428 * 122.25541 * 0.02562 * 16 15 14 19 19 C 1.39427 * 121.77328 * 180.02562 * 18 16 15 20 20 C 1.37814 * 118.76135 * 179.32189 * 19 18 16 21 21 N 1.32203 * 121.53633 * 0.64102 * 20 19 18 22 22 C 1.31867 * 122.17277 * 359.54621 * 21 20 19 23 23 C 1.38941 * 120.00101 * 0.02562 * 22 21 20 24 24 C 1.52955 * 109.81826 * 63.59881 * 10 9 8 25 25 C 1.51262 * 120.85153 * 179.71692 * 7 2 1 26 26 H 0.96994 * 120.00265 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.63223 * 351.04393 * 8 7 2 28 28 H 1.09002 * 109.62549 * 111.42309 * 8 7 2 29 29 H 1.09006 * 109.48060 * 65.35121 * 9 8 7 30 30 H 1.08995 * 109.48725 * 185.39311 * 9 8 7 31 31 H 1.08000 * 120.28666 * 359.95289 * 14 13 12 32 32 H 1.07997 * 118.71951 * 179.97438 * 15 14 13 33 33 H 1.08000 * 120.61525 * 359.97438 * 19 18 16 34 34 H 1.08005 * 119.22691 * 180.16461 * 20 19 18 35 35 H 1.07998 * 120.00257 * 180.02562 * 22 21 20 36 36 H 1.08998 * 109.48408 * 56.37672 * 24 10 9 37 37 H 1.09004 * 109.48061 * 176.40983 * 24 10 9 38 38 H 1.08994 * 109.63158 * 248.38715 * 25 7 2 39 39 H 1.09003 * 109.62762 * 8.96124 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5466 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 6 1.2678 -2.5151 -0.0005 9 6 1.8236 -3.3831 1.1332 10 6 3.3406 -3.5074 0.9810 11 1 3.5740 -3.9122 -0.0037 12 7 3.8612 -4.4084 2.0123 13 6 4.4092 -5.5528 1.6694 14 6 4.6297 -5.9046 0.2591 15 6 5.1938 -7.0855 -0.0464 16 7 5.5763 -7.9831 0.9044 17 1 5.9789 -8.8198 0.6236 18 6 5.4112 -7.7439 2.2476 19 6 5.8068 -8.6696 3.2122 20 6 5.6249 -8.3596 4.5427 21 7 5.0759 -7.2170 4.9177 22 6 4.6806 -6.3088 4.0471 23 6 4.8354 -6.5380 2.6855 24 6 3.9914 -2.1315 1.1324 25 6 3.5170 -1.2165 -0.0070 26 1 -0.4850 0.8400 0.0004 27 1 0.2037 -2.3410 0.1597 28 1 1.4166 -3.0173 -0.9565 29 1 1.5912 -2.9206 2.0926 30 1 1.3713 -4.3737 1.0880 31 1 4.3404 -5.2202 -0.5246 32 1 5.3500 -7.3325 -1.0861 33 1 6.2572 -9.6075 2.9224 34 1 5.9312 -9.0701 5.2963 35 1 4.2366 -5.3869 4.3924 36 1 3.7077 -1.6986 2.0917 37 1 5.0756 -2.2352 1.0867 38 1 3.8735 -1.6020 -0.9621 39 1 3.8989 -0.2076 0.1493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167841090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:50 Heat of formation + Delta-G solvation = 39.934536 kcal Electronic energy + Delta-G solvation = -21453.751115 eV Core-core repulsion = 18359.698605 eV Total energy + Delta-G solvation = -3094.052509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.87020 -39.29540 -38.67914 -36.33509 -34.10903 -32.83659 -32.02249 -31.46298 -30.76617 -28.74397 -25.36858 -25.06073 -23.91284 -23.30478 -22.25455 -21.07472 -19.47332 -19.29959 -18.30051 -17.80546 -16.74575 -16.39089 -16.17468 -15.75212 -15.71169 -15.30860 -14.95619 -14.76839 -14.47666 -14.13997 -14.02274 -13.85394 -13.76331 -13.33461 -13.07617 -12.79755 -12.67733 -12.42971 -12.03592 -11.98537 -11.85973 -11.38082 -10.86662 -10.74805 -10.61526 -10.57772 -10.54478 -9.87628 -9.81982 -8.35970 -8.18383 -6.12957 -0.20074 0.10046 0.87478 1.37408 1.39030 1.48694 2.06642 2.14944 2.39608 3.01349 3.05141 3.19168 3.57424 3.60656 3.81682 3.97267 4.10164 4.21899 4.29901 4.34035 4.50823 4.64372 4.71017 4.72791 4.84503 4.89378 4.95254 5.01200 5.07162 5.10091 5.18250 5.25393 5.28658 5.52177 5.55240 5.61815 5.65864 5.73507 5.85301 6.03103 6.33748 6.47527 6.91961 7.05076 7.14894 7.44535 8.92911 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.030494 B = 0.003849 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.986495 B = 7272.877219 C = 7560.065480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.019 3.981 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.250 1.250 6 H -0.288 1.288 7 C -0.500 4.500 8 C 0.012 3.988 9 C -0.079 4.079 10 C 0.096 3.904 11 H 0.050 0.950 12 N -0.571 5.571 13 C 0.227 3.773 14 C -0.307 4.307 15 C 0.171 3.829 16 N -0.609 5.609 17 H 0.439 0.561 18 C 0.221 3.779 19 C -0.211 4.211 20 C 0.129 3.871 21 N -0.541 5.541 22 C 0.163 3.837 23 C -0.175 4.175 24 C -0.085 4.085 25 C -0.013 4.013 26 H 0.263 0.737 27 H 0.025 0.975 28 H 0.003 0.997 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.136 0.864 32 H 0.208 0.792 33 H 0.188 0.812 34 H 0.194 0.806 35 H 0.148 0.852 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.025 0.975 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.040 -22.269 1.001 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.178 4.178 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.175 1.175 6 H -0.214 1.214 7 C -0.519 4.519 8 C -0.026 4.026 9 C -0.117 4.117 10 C -0.014 4.014 11 H 0.067 0.933 12 N -0.283 5.283 13 C 0.045 3.955 14 C -0.335 4.335 15 C 0.044 3.956 16 N -0.222 5.222 17 H 0.279 0.721 18 C 0.108 3.892 19 C -0.234 4.234 20 C -0.025 4.025 21 N -0.252 5.252 22 C 0.003 3.997 23 C -0.182 4.182 24 C -0.123 4.123 25 C -0.051 4.051 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.022 0.978 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.153 0.847 32 H 0.224 0.776 33 H 0.206 0.794 34 H 0.211 0.789 35 H 0.165 0.835 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 15.471 -21.274 2.586 26.432 hybrid contribution -0.149 0.905 -1.684 1.918 sum 15.322 -20.369 0.902 25.504 Atomic orbital electron populations 1.69980 1.07735 1.27538 1.52028 1.25661 0.95437 1.01979 0.94766 0.85755 0.79340 0.79352 0.78576 1.20250 1.17454 1.21416 1.20618 0.91191 0.91767 1.48306 1.19313 0.96866 0.93698 0.92735 1.21408 0.94107 0.97014 0.99207 1.21413 0.94344 0.92874 0.92756 0.93270 1.72625 1.15316 1.04322 1.36073 1.21551 0.91883 0.90777 0.91326 1.22395 1.14135 1.01052 0.95962 1.21827 0.90684 0.87805 0.95259 1.41120 1.58127 1.21265 1.01724 0.72075 1.18043 0.92684 0.92651 0.85787 1.21989 1.07492 1.01730 0.92183 1.23305 0.90860 0.92724 0.95632 1.67829 1.14268 1.03977 1.39131 1.22652 0.91893 0.97189 0.87953 1.19371 1.08809 0.95319 0.94731 1.21480 0.97027 0.94666 0.99126 1.19828 0.94745 0.95820 0.94722 0.92748 0.95631 0.97842 0.95104 0.95069 0.84651 0.77553 0.79434 0.78925 0.83481 0.94346 0.93699 0.95662 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 12.73 21.45 0.27 -57.03 16 2 C 0.02 1.12 5.46 84.65 0.46 1.58 16 3 Si 0.94 45.18 27.28 68.60 1.87 47.05 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.25 -11.19 6.45 99.48 0.64 -10.55 16 6 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 7 C -0.50 -28.00 5.51 -16.18 -0.09 -28.09 16 8 C 0.01 0.65 5.97 30.10 0.18 0.83 16 9 C -0.08 -3.88 5.54 30.66 0.17 -3.71 16 10 C 0.10 4.21 2.62 44.96 0.12 4.33 16 11 H 0.05 2.08 5.24 -2.39 -0.01 2.07 16 12 N -0.57 -23.30 9.64 -309.63 -2.98 -26.28 16 13 C 0.23 7.57 6.97 44.04 0.31 7.88 16 14 C -0.31 -8.00 9.41 23.69 0.22 -7.78 16 15 C 0.17 2.42 11.06 83.13 0.92 3.34 16 16 N -0.61 -6.67 5.31 -187.95 -1.00 -7.67 16 17 H 0.44 0.59 8.79 -92.71 -0.81 -0.23 16 18 C 0.22 4.00 6.69 39.14 0.26 4.26 16 19 C -0.21 -2.53 10.01 22.46 0.22 -2.31 16 20 C 0.13 2.09 11.14 84.54 0.94 3.03 16 21 N -0.54 -13.89 10.35 -195.34 -2.02 -15.91 16 22 C 0.16 4.86 10.85 84.86 0.92 5.78 16 23 C -0.18 -4.92 5.89 -20.00 -0.12 -5.04 16 24 C -0.08 -3.86 5.55 30.79 0.17 -3.69 16 25 C -0.01 -0.64 5.62 30.24 0.17 -0.47 16 26 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 27 H 0.02 1.52 7.07 -2.38 -0.02 1.50 16 28 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.14 3.83 5.92 -2.91 -0.02 3.81 16 32 H 0.21 0.86 8.06 -2.91 -0.02 0.84 16 33 H 0.19 0.38 8.06 -2.91 -0.02 0.36 16 34 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.15 4.94 7.76 -2.91 -0.02 4.92 16 36 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.03 1.61 4.77 -2.39 -0.01 1.60 16 Total: -1.00 -77.92 315.14 1.21 -76.71 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 0.20 Total: 3.18 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 4.86 Total: -20.05 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -5.73 Total: -106.89 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.87 Total: 47.05 kcal Total: -77.92 1.21 -76.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.647 kcal (2) G-P(sol) polarization free energy of solvation -77.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds