Wall clock time and date at job start Tue Mar 31 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86810 * 119.99652 * 2 1 4 4 H 1.48500 * 109.46710 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47158 * 299.99767 * 3 2 1 6 6 H 1.48502 * 109.46769 * 60.00225 * 3 2 1 7 7 C 1.37876 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99653 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47008 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47301 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.39037 * 119.99830 * 179.72500 * 12 11 10 14 14 C 1.38967 * 119.64922 * 0.02562 * 13 12 11 15 15 C 1.39418 * 118.95121 * 179.79336 * 14 13 12 16 16 C 1.48415 * 120.86395 * 180.19984 * 15 14 13 17 17 C 1.39743 * 120.90304 * 0.02562 * 16 15 14 18 18 C 1.38013 * 119.02128 * 179.79657 * 17 16 15 19 19 N 1.31901 * 120.88177 * 0.48862 * 18 17 16 20 20 C 1.31906 * 122.00168 * 359.73958 * 19 18 17 21 21 C 1.38017 * 120.88086 * 0.02562 * 20 19 18 22 22 C 1.39946 * 118.27284 * 0.47843 * 15 14 13 23 23 C 1.37828 * 119.19301 * 359.74355 * 22 15 14 24 24 N 1.31999 * 120.97869 * 0.02562 * 23 22 15 25 25 H 0.97000 * 120.00497 * 0.02562 * 1 2 3 26 26 H 1.08990 * 109.47431 * 59.99962 * 9 7 2 27 27 H 1.09002 * 109.47072 * 299.99242 * 9 7 2 28 28 H 1.09004 * 109.47038 * 59.99609 * 10 9 7 29 29 H 1.09000 * 109.46939 * 300.00262 * 10 9 7 30 30 H 1.09004 * 109.47066 * 60.00027 * 11 10 9 31 31 H 1.08994 * 109.46974 * 300.00175 * 11 10 9 32 32 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 33 33 H 1.07998 * 120.52630 * 0.02562 * 14 13 12 34 34 H 1.07997 * 120.48947 * 0.02562 * 17 16 15 35 35 H 1.08002 * 119.56180 * 180.20676 * 18 17 16 36 36 H 1.08003 * 119.55853 * 180.02562 * 20 19 18 37 37 H 1.07991 * 120.48850 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.40548 * 179.77274 * 22 15 14 39 39 H 1.08000 * 119.51117 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4326 -6.1005 0.0006 13 6 1.9692 -7.4113 0.0068 14 6 0.6015 -7.6570 0.0130 15 6 0.1528 -8.9770 0.0148 16 6 -1.2984 -9.2879 0.0169 17 6 -2.2514 -8.2658 0.0167 18 6 -3.5906 -8.5991 0.0144 19 7 -3.9742 -9.8611 0.0222 20 6 -3.1073 -10.8552 0.0273 21 6 -1.7490 -10.6106 0.0252 22 6 1.1065 -10.0012 0.0205 23 6 2.4452 -9.6733 0.0187 24 7 2.8359 -8.4125 0.0123 25 1 -0.4851 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8722 -3.6042 0.8905 29 1 2.8721 -3.6042 -0.8894 30 1 0.8536 -5.0451 -0.8886 31 1 0.8542 -5.0445 0.8913 32 1 3.3863 -5.9232 0.0002 33 1 -0.1029 -6.8383 0.0126 34 1 -1.9444 -7.2304 0.0145 35 1 -4.3346 -7.8162 0.0109 36 1 -3.4652 -11.8742 0.0332 37 1 -1.0448 -11.4293 0.0298 38 1 0.7972 -11.0360 0.0257 39 1 3.1855 -10.4596 0.0227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:14 Heat of formation + Delta-G solvation = 59.089976 kcal Electronic energy + Delta-G solvation = -20229.788899 eV Core-core repulsion = 17136.567032 eV Total energy + Delta-G solvation = -3093.221867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.73810 -39.72896 -36.47359 -34.50393 -33.59872 -31.79933 -31.45333 -30.64840 -29.35610 -26.54099 -24.94669 -24.15680 -23.24730 -22.08228 -21.43381 -20.37700 -18.05199 -17.11177 -16.59451 -16.35074 -15.92311 -15.71504 -15.13095 -15.12130 -14.57468 -14.34319 -14.28570 -14.10612 -13.79726 -13.68140 -13.05025 -12.51909 -12.28127 -12.13881 -11.86355 -11.43678 -11.14842 -10.96728 -10.79121 -10.60090 -10.17360 -9.76460 -9.76331 -9.58648 -9.50289 -9.42338 -9.18801 -9.04813 -8.43473 -7.65659 -6.08294 -4.11093 0.34079 0.89441 1.31943 1.84359 3.26241 3.26504 3.34492 3.38506 3.56754 3.97908 4.10869 4.21516 4.39902 4.41792 4.69003 4.78311 4.83011 5.00343 5.11806 5.22323 5.28130 5.33888 5.47387 5.52808 5.56233 5.58681 5.70858 5.79257 5.95157 5.96902 6.28396 6.41726 6.43317 6.47537 6.62003 6.88194 7.11050 7.54882 7.66371 7.68959 7.71980 7.89980 8.19587 8.31801 8.95448 9.53749 11.03028 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.018560 B = 0.003065 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.226975 B = 9132.715240 C =10615.179942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.122 3.878 12 N -0.717 5.717 13 C 0.411 3.589 14 C -0.223 4.223 15 C 0.027 3.973 16 C -0.002 4.002 17 C -0.156 4.156 18 C 0.102 3.898 19 N -0.486 5.486 20 C 0.097 3.903 21 C -0.159 4.159 22 C -0.232 4.232 23 C 0.152 3.848 24 N -0.547 5.547 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.405 0.595 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.139 0.861 38 H 0.131 0.869 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 -22.221 0.044 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.002 4.002 12 N -0.347 5.347 13 C 0.175 3.825 14 C -0.249 4.249 15 C 0.019 3.981 16 C -0.010 4.010 17 C -0.176 4.176 18 C -0.054 4.054 19 N -0.196 5.196 20 C -0.060 4.060 21 C -0.179 4.179 22 C -0.255 4.255 23 C -0.006 4.006 24 N -0.266 5.266 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.241 0.759 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.156 0.844 38 H 0.149 0.851 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.553 -21.898 0.043 22.046 hybrid contribution 0.830 1.058 0.000 1.345 sum -1.723 -20.840 0.043 20.911 Atomic orbital electron populations 1.69960 1.06054 1.26659 1.50660 1.25019 0.94867 0.99340 0.95180 0.86526 0.80106 0.83680 0.77645 1.19727 1.20952 1.20955 1.21232 0.93096 0.90880 1.50865 0.92559 1.19030 0.93791 0.90903 0.97545 1.21872 0.99859 0.92851 1.01270 1.21742 0.92027 0.85442 1.00975 1.44926 1.10088 1.01206 1.78494 1.18347 0.88511 0.86189 0.89503 1.21496 0.95158 0.96947 1.11288 1.18705 0.91174 0.92983 0.95196 1.19126 0.92111 0.93497 0.96281 1.22374 0.93956 1.00690 1.00564 1.22774 0.94407 0.93531 0.94737 1.67641 1.39701 1.00504 1.11724 1.22711 0.89211 0.98644 0.95385 1.22239 0.97479 0.96619 1.01571 1.21755 0.93753 0.99398 1.10601 1.22269 0.94091 0.92036 0.92162 1.67145 1.38598 0.99908 1.20906 0.92945 0.96295 0.96288 0.92521 0.92508 0.92108 0.92113 0.75947 0.84537 0.84076 0.82246 0.82568 0.84370 0.85148 0.82751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.12 1.90 4.89 -4.04 -0.02 1.88 16 12 N -0.72 -10.46 5.73 -60.46 -0.35 -10.81 16 13 C 0.41 5.95 7.65 -155.04 -1.19 4.77 16 14 C -0.22 -2.96 8.74 -38.87 -0.34 -3.30 16 15 C 0.03 0.32 5.91 -104.63 -0.62 -0.30 16 16 C 0.00 -0.02 5.91 -104.58 -0.62 -0.64 16 17 C -0.16 -1.65 9.52 -39.10 -0.37 -2.02 16 18 C 0.10 1.05 11.17 -17.60 -0.20 0.85 16 19 N -0.49 -5.39 10.35 -13.33 -0.14 -5.53 16 20 C 0.10 0.88 11.17 -17.60 -0.20 0.68 16 21 C -0.16 -1.42 9.53 -39.10 -0.37 -1.79 16 22 C -0.23 -2.38 9.52 -39.09 -0.37 -2.75 16 23 C 0.15 1.68 11.16 -17.63 -0.20 1.49 16 24 N -0.55 -7.67 10.38 -12.51 -0.13 -7.80 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 31 H 0.06 0.94 7.91 -51.93 -0.41 0.53 16 32 H 0.40 5.67 8.60 -40.82 -0.35 5.32 16 33 H 0.14 1.71 5.07 -52.49 -0.27 1.45 16 34 H 0.14 1.37 6.43 -52.49 -0.34 1.03 16 35 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.16 0.95 8.06 -52.48 -0.42 0.52 16 37 H 0.14 0.88 6.43 -52.49 -0.34 0.55 16 38 H 0.13 0.96 6.43 -52.49 -0.34 0.62 16 39 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -31.49 332.16 -10.03 -41.51 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.95 Total: 3.01 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -5.18 Total: -16.17 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.12 Total: -49.54 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.49 -10.03 -41.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.600 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds