Wall clock time and date at job start Tue Mar 31 2020 05:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99845 * 2 1 4 4 H 1.48506 * 109.46825 * 239.99754 * 3 2 1 5 5 H 1.48492 * 109.47088 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47088 * 119.99775 * 3 2 1 7 7 C 1.37874 * 120.00421 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00237 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47659 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47502 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47112 * 180.02562 * 11 10 9 13 13 C 1.39626 * 119.99861 * 180.02562 * 12 11 10 14 14 C 1.39429 * 120.39048 * 180.02562 * 13 12 11 15 15 C 1.38248 * 118.44767 * 179.97438 * 14 13 12 16 16 C 1.39392 * 119.15356 * 359.97438 * 15 14 13 17 17 C 1.48312 * 119.64181 * 179.97438 * 16 15 14 18 18 C 1.39805 * 120.53635 * 179.97438 * 17 16 15 19 19 C 1.38410 * 118.30746 * 179.97438 * 18 17 16 20 20 C 1.38320 * 119.28515 * 359.97438 * 19 18 17 21 21 N 1.31889 * 121.03782 * 0.02562 * 20 19 18 22 22 C 1.31739 * 121.85763 * 359.97438 * 21 20 19 23 23 N 1.32653 * 120.70722 * 0.25723 * 16 15 14 24 24 C 1.31673 * 121.69449 * 359.47375 * 23 16 15 25 25 H 0.96998 * 119.99977 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46799 * 60.00303 * 9 7 2 27 27 H 1.09006 * 109.47492 * 300.00566 * 9 7 2 28 28 H 1.09004 * 109.46714 * 60.00317 * 10 9 7 29 29 H 1.09000 * 109.47004 * 300.00409 * 10 9 7 30 30 H 1.09004 * 109.46868 * 60.00423 * 11 10 9 31 31 H 1.09000 * 109.47334 * 300.00218 * 11 10 9 32 32 H 0.97000 * 120.00103 * 0.02562 * 12 11 10 33 33 H 1.08001 * 120.77832 * 359.95087 * 14 13 12 34 34 H 1.08003 * 120.41851 * 179.97438 * 15 14 13 35 35 H 1.07996 * 120.84921 * 359.70140 * 18 17 16 36 36 H 1.07998 * 120.35450 * 179.97438 * 19 18 17 37 37 H 1.07994 * 119.48089 * 180.02562 * 20 19 18 38 38 H 1.08002 * 119.70682 * 180.02562 * 22 21 20 39 39 H 1.08005 * 119.61293 * 180.27088 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0015 11 6 1.4805 -4.9871 0.0033 12 7 2.4325 -6.1005 0.0037 13 6 1.9671 -7.4169 0.0047 14 6 2.8659 -8.4828 0.0056 15 6 2.3612 -9.7699 0.0072 16 6 0.9800 -9.9576 0.0084 17 6 0.4268 -11.3337 0.0095 18 6 -0.9554 -11.5436 0.0112 19 6 -1.4214 -12.8469 0.0117 20 6 -0.5131 -13.8902 0.0099 21 7 0.7857 -13.6610 0.0083 22 6 1.2761 -12.4383 0.0078 23 7 0.1551 -8.9187 0.0029 24 6 0.6024 -7.6803 0.0064 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5575 -0.8881 27 1 0.6247 -2.5564 0.8919 28 1 2.8727 -3.6039 0.8910 29 1 2.8714 -3.6047 -0.8890 30 1 0.8529 -5.0455 -0.8860 31 1 0.8547 -5.0442 0.8940 32 1 3.3861 -5.9232 0.0032 33 1 3.9315 -8.3072 0.0047 34 1 3.0286 -10.6190 0.0075 35 1 -1.6421 -10.7101 0.0166 36 1 -2.4826 -13.0471 0.0134 37 1 -0.8732 -14.9083 0.0098 38 1 2.3459 -12.2907 0.0060 39 1 -0.0995 -6.8594 0.0062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168430352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:08 Heat of formation + Delta-G solvation = 36.715378 kcal Electronic energy + Delta-G solvation = -19852.646936 eV Core-core repulsion = 16758.454834 eV Total energy + Delta-G solvation = -3094.192103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.54458 -40.50662 -37.84327 -35.69326 -34.08145 -33.51857 -33.16830 -32.15958 -29.70884 -27.98164 -25.69122 -25.18509 -24.40924 -23.24519 -22.47409 -21.96921 -18.64604 -18.56520 -17.96502 -17.52994 -17.52846 -16.58563 -16.38530 -16.38422 -15.62029 -15.34047 -15.20268 -14.99428 -14.60986 -14.31084 -14.03219 -13.90645 -13.77534 -13.71549 -13.20635 -12.80254 -12.68127 -12.48875 -12.38645 -12.05104 -11.47686 -11.47258 -11.21556 -10.88921 -10.56021 -10.54591 -10.53177 -10.40750 -9.96369 -8.32708 -8.21129 -6.32052 -0.35256 0.32862 0.33842 0.86928 1.40506 1.42726 1.50698 2.32932 2.43367 2.72387 3.12677 3.16863 3.23321 3.55002 3.79429 3.91420 3.97069 4.02712 4.09747 4.13640 4.21763 4.35956 4.40162 4.54024 4.61559 4.66184 4.83345 4.94700 4.96979 5.07726 5.13653 5.15771 5.24614 5.37371 5.49012 5.60005 5.70784 5.78361 5.83269 6.11385 6.24145 6.69264 6.85097 7.01268 7.07756 7.37386 8.90343 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.051189 B = 0.002237 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.860100 B =12516.422524 C =13037.531305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.025 3.975 10 C -0.103 4.103 11 C 0.130 3.870 12 N -0.724 5.724 13 C 0.172 3.828 14 C -0.154 4.154 15 C -0.100 4.100 16 C 0.072 3.928 17 C -0.090 4.090 18 C -0.067 4.067 19 C -0.168 4.168 20 C 0.088 3.912 21 N -0.505 5.505 22 C 0.101 3.899 23 N -0.456 5.456 24 C 0.009 3.991 25 H 0.263 0.737 26 H -0.005 1.005 27 H -0.005 1.005 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.411 0.589 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.136 0.864 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.177 0.823 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.454 -25.315 0.034 25.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.081 0.919 9 C -0.013 4.013 10 C -0.141 4.141 11 C 0.006 3.994 12 N -0.352 5.352 13 C 0.063 3.937 14 C -0.184 4.184 15 C -0.120 4.120 16 C -0.067 4.067 17 C -0.093 4.093 18 C -0.094 4.094 19 C -0.188 4.188 20 C -0.069 4.069 21 N -0.214 5.214 22 C -0.057 4.057 23 N -0.164 5.164 24 C -0.156 4.156 25 H 0.072 0.928 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.248 0.752 33 H 0.182 0.818 34 H 0.185 0.815 35 H 0.154 0.846 36 H 0.181 0.819 37 H 0.200 0.800 38 H 0.194 0.806 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.842 -25.864 0.027 26.020 hybrid contribution 0.469 2.359 0.000 2.405 sum 3.311 -23.506 0.027 23.738 Atomic orbital electron populations 1.70081 1.07762 1.27848 1.51548 1.25979 0.95769 1.03390 0.94829 0.85520 0.78263 0.78207 0.79176 1.19176 1.21076 1.19167 1.21656 0.93634 0.92268 1.50611 0.91939 1.18933 0.94393 0.92696 0.95275 1.21557 0.98520 0.92430 1.01609 1.21351 0.92035 0.85214 1.00783 1.44755 1.09388 1.01358 1.79716 1.19151 0.94369 0.86260 0.93882 1.21327 1.00776 0.90709 1.05602 1.22108 0.94920 0.98240 0.96764 1.19504 0.90564 0.91229 1.05379 1.19605 0.94809 0.91963 1.02930 1.21901 0.95012 0.98314 0.94136 1.22427 1.02971 0.92372 1.00981 1.23324 0.88090 1.01114 0.94367 1.67716 1.16791 1.23804 1.13060 1.23126 1.01040 0.86379 0.95128 1.67287 1.40272 0.99086 1.09762 1.22309 0.92784 0.93928 1.06547 0.92784 0.98640 0.98632 0.91999 0.91991 0.92544 0.92545 0.75240 0.81840 0.81508 0.84567 0.81940 0.79955 0.80570 0.83217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.54 -29.79 9.11 25.60 0.23 -29.55 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 11 C 0.13 3.95 4.92 86.38 0.43 4.37 16 12 N -0.72 -17.64 5.73 -338.96 -1.94 -19.59 16 13 C 0.17 4.20 6.68 38.37 0.26 4.45 16 14 C -0.15 -2.95 10.03 22.56 0.23 -2.73 16 15 C -0.10 -1.87 9.46 22.55 0.21 -1.66 16 16 C 0.07 1.74 6.73 41.98 0.28 2.02 16 17 C -0.09 -1.97 5.89 -19.95 -0.12 -2.09 16 18 C -0.07 -1.38 9.69 22.69 0.22 -1.16 16 19 C -0.17 -2.59 10.10 22.33 0.23 -2.37 16 20 C 0.09 1.37 11.17 84.70 0.95 2.32 16 21 N -0.51 -10.02 10.35 -194.93 -2.02 -12.04 16 22 C 0.10 1.92 10.59 84.97 0.90 2.82 16 23 N -0.46 -12.84 9.49 -184.31 -1.75 -14.59 16 24 C 0.01 0.24 10.48 84.90 0.89 1.13 16 25 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 26 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 27 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 28 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.06 1.76 7.96 -2.38 -0.02 1.74 16 31 H 0.06 1.76 7.96 -2.39 -0.02 1.74 16 32 H 0.41 8.36 8.50 -92.71 -0.79 7.57 16 33 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.17 1.89 6.21 -2.91 -0.02 1.87 16 35 H 0.14 2.94 7.63 -2.91 -0.02 2.92 16 36 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 37 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.18 2.32 6.20 -2.91 -0.02 2.30 16 39 H 0.15 4.19 6.74 -2.91 -0.02 4.17 16 Total: -1.00 -67.95 334.25 2.35 -65.60 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.28 Total: 15.14 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 5.47 Total: -24.31 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -5.43 Total: -101.69 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -67.95 2.35 -65.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.318 kcal (2) G-P(sol) polarization free energy of solvation -67.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds