Wall clock time and date at job start Tue Mar 31 2020 05:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.38996 * 119.99939 * 180.02562 * 12 11 10 14 14 C 1.39208 * 119.63956 * 359.72581 * 13 12 11 15 15 C 1.38413 * 119.29918 * 179.75467 * 14 13 12 16 16 C 1.38653 * 118.59592 * 0.50838 * 15 14 13 17 17 C 1.39137 * 119.23692 * 359.75455 * 16 15 14 18 18 C 1.48339 * 119.68207 * 179.97438 * 17 16 15 19 19 C 1.39795 * 120.53995 * 179.97438 * 18 17 16 20 20 C 1.38402 * 118.31292 * 179.97438 * 19 18 17 21 21 C 1.38322 * 119.28208 * 0.02562 * 20 19 18 22 22 N 1.31891 * 121.03603 * 359.97438 * 21 20 19 23 23 C 1.31750 * 121.85348 * 359.73249 * 22 21 20 24 24 N 1.32273 * 119.64115 * 180.02562 * 13 12 11 25 25 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 30 30 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 31 31 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 32 32 H 0.96998 * 120.00192 * 359.97438 * 12 11 10 33 33 H 1.08006 * 120.35109 * 0.02562 * 14 13 12 34 34 H 1.07998 * 120.70172 * 180.24863 * 15 14 13 35 35 H 1.08005 * 120.37894 * 179.73192 * 16 15 14 36 36 H 1.08003 * 120.84039 * 359.97438 * 19 18 17 37 37 H 1.08000 * 120.36593 * 180.02562 * 20 19 18 38 38 H 1.08007 * 119.48450 * 179.97438 * 21 20 19 39 39 H 1.07994 * 119.70227 * 180.28654 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 7 2.4321 -6.1007 0.0018 13 6 1.9687 -7.4111 0.0019 14 6 0.5985 -7.6569 0.0072 15 6 0.1449 -8.9645 0.0021 16 6 1.0775 -9.9905 0.0027 17 6 2.4330 -9.6767 0.0030 18 6 3.4393 -10.7666 0.0042 19 6 4.8058 -10.4718 0.0040 20 6 5.7044 -11.5244 0.0057 21 6 5.2262 -12.8223 0.0068 22 7 3.9306 -13.0696 0.0069 23 6 3.0378 -12.1007 0.0111 24 7 2.8345 -8.4111 0.0030 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8718 -3.6044 0.8905 29 1 2.8717 -3.6045 -0.8894 30 1 0.8537 -5.0446 0.8914 31 1 0.8531 -5.0451 -0.8886 32 1 3.3857 -5.9235 0.0014 33 1 -0.1032 -6.8358 0.0108 34 1 -0.9132 -9.1811 0.0021 35 1 0.7554 -11.0214 0.0031 36 1 5.1514 -9.4486 0.0027 37 1 6.7676 -11.3345 0.0060 38 1 5.9245 -13.6462 0.0077 39 1 1.9854 -12.3429 0.0157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168435589.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:09 Heat of formation + Delta-G solvation = 59.179813 kcal Electronic energy + Delta-G solvation = -19992.175326 eV Core-core repulsion = 16898.957354 eV Total energy + Delta-G solvation = -3093.217972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.72326 -39.68961 -36.48461 -33.91244 -33.24563 -32.31881 -32.13801 -30.93674 -28.72853 -26.52140 -24.78431 -24.09203 -23.16281 -22.28184 -21.30347 -20.38769 -17.87269 -17.26170 -16.82103 -16.39497 -15.95657 -15.75072 -15.12233 -15.04830 -14.51838 -14.40755 -14.13374 -14.02678 -13.70120 -13.27466 -13.18338 -12.39637 -12.13668 -12.07939 -11.92109 -11.84000 -11.00409 -10.78006 -10.62771 -10.60027 -10.18044 -9.89349 -9.81474 -9.77906 -9.58597 -9.48819 -9.19661 -8.90901 -8.42799 -7.56690 -6.07853 -4.10675 0.32243 1.01540 1.46432 1.68420 3.21524 3.27478 3.34096 3.37345 3.50484 4.02749 4.04886 4.28567 4.40118 4.55247 4.65200 4.76737 4.87935 5.07732 5.16336 5.21422 5.28377 5.30558 5.43292 5.57199 5.60788 5.61278 5.89295 5.92427 5.98776 6.10156 6.25212 6.35719 6.45526 6.48943 6.65153 6.89048 7.13682 7.55410 7.65973 7.67246 7.70339 7.90392 8.18444 8.32225 8.95643 9.53909 11.03444 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.035034 B = 0.002443 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.024757 B =11456.369363 C =12229.643059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.123 3.877 12 N -0.718 5.718 13 C 0.414 3.586 14 C -0.236 4.236 15 C -0.030 4.030 16 C -0.230 4.230 17 C 0.211 3.789 18 C -0.092 4.092 19 C -0.038 4.038 20 C -0.178 4.178 21 C 0.099 3.901 22 N -0.487 5.487 23 C 0.117 3.883 24 N -0.545 5.545 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.403 0.597 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.333 -23.580 0.021 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.000 4.000 12 N -0.348 5.348 13 C 0.176 3.824 14 C -0.261 4.261 15 C -0.056 4.056 16 C -0.254 4.254 17 C 0.074 3.926 18 C -0.095 4.095 19 C -0.065 4.065 20 C -0.197 4.197 21 C -0.057 4.057 22 N -0.195 5.195 23 C -0.041 4.041 24 N -0.263 5.263 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.238 0.762 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.173 0.827 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.615 -23.934 0.025 24.584 hybrid contribution 0.195 1.860 -0.015 1.870 sum 5.811 -22.074 0.010 22.826 Atomic orbital electron populations 1.69955 1.06057 1.26755 1.50568 1.25027 0.94879 0.99346 0.95198 0.86570 0.79827 0.83332 0.78144 1.20620 1.21169 1.19870 1.21195 0.93044 0.90898 1.50974 0.92627 1.19028 0.93798 0.90887 0.97562 1.21869 0.99847 0.92926 1.01193 1.21731 0.91953 0.85288 1.01053 1.44903 1.10001 1.01221 1.78716 1.18321 0.88803 0.85730 0.89511 1.21572 0.94886 0.98337 1.11282 1.21234 0.99815 0.91724 0.92813 1.21626 0.92821 1.00228 1.10693 1.19042 0.90662 0.88881 0.94061 1.19600 0.93408 0.93156 1.03347 1.21822 0.91911 1.00663 0.92072 1.22173 1.01258 0.93709 1.02598 1.22858 0.92174 0.96126 0.94574 1.67712 1.02796 1.36423 1.12609 1.22925 0.99695 0.87310 0.94176 1.66980 1.38507 0.98856 1.21965 0.92898 0.96295 0.96278 0.92574 0.92572 0.92073 0.92071 0.76152 0.84616 0.84782 0.85156 0.83635 0.84487 0.82674 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.12 1.94 4.89 -4.04 -0.02 1.92 16 12 N -0.72 -10.48 5.73 -60.43 -0.35 -10.83 16 13 C 0.41 6.02 7.65 -155.11 -1.19 4.84 16 14 C -0.24 -3.05 9.32 -39.16 -0.37 -3.42 16 15 C -0.03 -0.33 10.16 -39.36 -0.40 -0.73 16 16 C -0.23 -2.48 9.47 -39.09 -0.37 -2.85 16 17 C 0.21 2.67 6.73 -82.97 -0.56 2.11 16 18 C -0.09 -1.04 5.89 -104.76 -0.62 -1.65 16 19 C -0.04 -0.40 9.69 -38.94 -0.38 -0.78 16 20 C -0.18 -1.48 10.10 -39.49 -0.40 -1.88 16 21 C 0.10 0.86 11.17 -17.50 -0.20 0.66 16 22 N -0.49 -5.15 10.35 -12.96 -0.13 -5.28 16 23 C 0.12 1.19 10.59 -17.18 -0.18 1.00 16 24 N -0.54 -7.81 9.54 -8.97 -0.09 -7.89 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.96 7.91 -51.93 -0.41 0.54 16 31 H 0.06 0.96 7.93 -51.93 -0.41 0.54 16 32 H 0.40 5.63 8.60 -40.82 -0.35 5.28 16 33 H 0.14 1.67 6.69 -52.48 -0.35 1.32 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.13 1.02 6.21 -52.48 -0.33 0.70 16 36 H 0.15 1.53 7.63 -52.48 -0.40 1.13 16 37 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.16 0.87 8.06 -52.48 -0.42 0.45 16 39 H 0.16 1.24 6.20 -52.49 -0.33 0.91 16 LS Contribution 334.17 15.07 5.04 5.04 Total: -1.00 -31.15 334.17 -10.25 -41.41 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.08 Total: 2.71 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -5.36 Total: -15.88 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.17 Total: -49.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.15 -10.25 -41.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168435589.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.586 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds