Wall clock time and date at job start Tue Mar 31 2020 05:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.38996 * 119.99939 * 180.02562 * 12 11 10 14 14 C 1.39208 * 119.63956 * 359.72581 * 13 12 11 15 15 C 1.38413 * 119.29918 * 179.75467 * 14 13 12 16 16 C 1.38653 * 118.59592 * 0.50838 * 15 14 13 17 17 C 1.39137 * 119.23692 * 359.75455 * 16 15 14 18 18 C 1.48339 * 119.68207 * 179.97438 * 17 16 15 19 19 C 1.39795 * 120.53995 * 179.97438 * 18 17 16 20 20 C 1.38402 * 118.31292 * 179.97438 * 19 18 17 21 21 C 1.38322 * 119.28208 * 0.02562 * 20 19 18 22 22 N 1.31891 * 121.03603 * 359.97438 * 21 20 19 23 23 C 1.31750 * 121.85348 * 359.73249 * 22 21 20 24 24 N 1.32273 * 119.64115 * 180.02562 * 13 12 11 25 25 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 30 30 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 31 31 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 32 32 H 0.96998 * 120.00192 * 359.97438 * 12 11 10 33 33 H 1.08006 * 120.35109 * 0.02562 * 14 13 12 34 34 H 1.07998 * 120.70172 * 180.24863 * 15 14 13 35 35 H 1.08005 * 120.37894 * 179.73192 * 16 15 14 36 36 H 1.08003 * 120.84039 * 359.97438 * 19 18 17 37 37 H 1.08000 * 120.36593 * 180.02562 * 20 19 18 38 38 H 1.08007 * 119.48450 * 179.97438 * 21 20 19 39 39 H 1.07994 * 119.70227 * 180.28654 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 7 2.4321 -6.1007 0.0018 13 6 1.9687 -7.4111 0.0019 14 6 0.5985 -7.6569 0.0072 15 6 0.1449 -8.9645 0.0021 16 6 1.0775 -9.9905 0.0027 17 6 2.4330 -9.6767 0.0030 18 6 3.4393 -10.7666 0.0042 19 6 4.8058 -10.4718 0.0040 20 6 5.7044 -11.5244 0.0057 21 6 5.2262 -12.8223 0.0068 22 7 3.9306 -13.0696 0.0069 23 6 3.0378 -12.1007 0.0111 24 7 2.8345 -8.4111 0.0030 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8718 -3.6044 0.8905 29 1 2.8717 -3.6045 -0.8894 30 1 0.8537 -5.0446 0.8914 31 1 0.8531 -5.0451 -0.8886 32 1 3.3857 -5.9235 0.0014 33 1 -0.1032 -6.8358 0.0108 34 1 -0.9132 -9.1811 0.0021 35 1 0.7554 -11.0214 0.0031 36 1 5.1514 -9.4486 0.0027 37 1 6.7676 -11.3345 0.0060 38 1 5.9245 -13.6462 0.0077 39 1 1.9854 -12.3429 0.0157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168435589.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:08 Heat of formation + Delta-G solvation = 41.500753 kcal Electronic energy + Delta-G solvation = -19992.941947 eV Core-core repulsion = 16898.957354 eV Total energy + Delta-G solvation = -3093.984593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.56209 -40.53339 -37.72320 -35.59740 -34.19256 -33.69321 -32.89610 -32.28190 -29.78908 -28.13870 -25.74665 -25.10714 -24.49478 -23.17482 -22.44385 -21.87302 -18.75196 -18.55914 -18.12026 -17.55202 -16.86267 -16.61431 -16.53227 -16.44474 -15.88080 -15.40064 -15.28198 -14.82999 -14.67821 -14.28005 -14.04780 -13.99128 -13.69221 -13.67684 -12.88861 -12.81167 -12.75737 -12.48754 -12.34530 -11.90120 -11.49755 -11.39617 -11.21748 -11.03917 -10.60114 -10.56101 -10.51197 -10.46614 -9.78529 -8.58820 -8.21518 -6.31882 -0.47931 0.29324 0.54460 0.82219 1.40364 1.40890 1.51923 2.12116 2.40991 2.72380 3.12367 3.15336 3.21860 3.57115 3.79985 3.96719 4.03590 4.05348 4.10415 4.20669 4.27282 4.37136 4.42163 4.50666 4.57426 4.70262 4.84578 4.93804 4.98264 5.08618 5.14007 5.19749 5.30117 5.37254 5.48793 5.61044 5.70508 5.73500 5.82909 6.04108 6.23223 6.61955 6.84698 6.95708 7.17604 7.37255 8.90168 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.035034 B = 0.002443 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.024757 B =11456.369363 C =12229.643059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.104 4.104 11 C 0.141 3.859 12 N -0.722 5.722 13 C 0.392 3.608 14 C -0.252 4.252 15 C -0.026 4.026 16 C -0.224 4.224 17 C 0.195 3.805 18 C -0.111 4.111 19 C -0.054 4.054 20 C -0.172 4.172 21 C 0.099 3.901 22 N -0.507 5.507 23 C 0.116 3.884 24 N -0.563 5.563 25 H 0.264 0.736 26 H -0.002 1.002 27 H -0.002 1.002 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.404 0.596 33 H 0.137 0.863 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.137 0.863 37 H 0.165 0.835 38 H 0.187 0.813 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 -25.190 0.016 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.142 4.142 11 C 0.017 3.983 12 N -0.354 5.354 13 C 0.156 3.844 14 C -0.277 4.277 15 C -0.051 4.051 16 C -0.247 4.247 17 C 0.058 3.942 18 C -0.114 4.114 19 C -0.081 4.081 20 C -0.192 4.192 21 C -0.058 4.058 22 N -0.215 5.215 23 C -0.042 4.042 24 N -0.282 5.282 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.239 0.761 33 H 0.155 0.845 34 H 0.185 0.815 35 H 0.180 0.820 36 H 0.155 0.845 37 H 0.182 0.818 38 H 0.203 0.797 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 6.452 -25.578 0.020 26.379 hybrid contribution -0.033 2.213 -0.014 2.214 sum 6.419 -23.365 0.006 24.231 Atomic orbital electron populations 1.70079 1.07661 1.27792 1.51563 1.25950 0.95786 1.03266 0.94799 0.85475 0.78667 0.78630 0.78451 1.19843 1.20786 1.18876 1.21669 0.93555 0.92345 1.50606 0.92226 1.18915 0.94271 0.92377 0.95489 1.21575 0.98640 0.92616 1.01396 1.21351 0.91540 0.84282 1.01104 1.44660 1.09640 1.01199 1.79889 1.18498 0.89610 0.85529 0.90802 1.21754 0.94312 0.99632 1.12038 1.21649 1.01590 0.90691 0.91164 1.22027 0.92006 1.01890 1.08756 1.19453 0.92071 0.88596 0.94069 1.19682 0.93533 0.93350 1.04869 1.21933 0.92341 1.01008 0.92794 1.22453 1.02355 0.93046 1.01308 1.23417 0.92116 0.97175 0.93045 1.67780 1.03732 1.36658 1.13367 1.23193 1.00717 0.86690 0.93574 1.66928 1.39079 0.99600 1.22585 0.92738 0.98348 0.98332 0.92332 0.92307 0.92081 0.92078 0.76095 0.84501 0.81470 0.81990 0.84533 0.81773 0.79651 0.80337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 13.29 21.45 0.28 -55.27 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -30.20 9.11 25.60 0.23 -29.96 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.03 1.37 4.97 29.85 0.15 1.51 16 10 C -0.10 -4.00 5.27 30.60 0.16 -3.84 16 11 C 0.14 4.52 4.89 86.38 0.42 4.94 16 12 N -0.72 -21.38 5.73 -345.11 -1.98 -23.36 16 13 C 0.39 11.46 7.65 133.12 1.02 12.48 16 14 C -0.25 -6.41 9.32 22.54 0.21 -6.20 16 15 C -0.03 -0.51 10.16 22.41 0.23 -0.28 16 16 C -0.22 -4.38 9.47 22.59 0.21 -4.16 16 17 C 0.20 4.79 6.73 41.91 0.28 5.07 16 18 C -0.11 -2.41 5.89 -19.95 -0.12 -2.53 16 19 C -0.05 -1.10 9.69 22.69 0.22 -0.88 16 20 C -0.17 -2.55 10.10 22.33 0.23 -2.33 16 21 C 0.10 1.47 11.17 84.70 0.95 2.42 16 22 N -0.51 -9.70 10.35 -194.93 -2.02 -11.72 16 23 C 0.12 2.15 10.59 84.97 0.90 3.05 16 24 N -0.56 -16.23 9.54 -182.30 -1.74 -17.97 16 25 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 26 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 27 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 28 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.06 1.94 7.91 -2.39 -0.02 1.93 16 31 H 0.06 1.95 7.93 -2.39 -0.02 1.93 16 32 H 0.40 11.50 8.60 -92.71 -0.80 10.70 16 33 H 0.14 3.34 6.69 -2.91 -0.02 3.32 16 34 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.16 2.02 6.21 -2.91 -0.02 2.00 16 36 H 0.14 2.94 7.63 -2.91 -0.02 2.91 16 37 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.18 2.34 6.20 -2.91 -0.02 2.32 16 Total: -1.00 -67.79 334.17 2.40 -65.40 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.27 Total: 17.50 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 5.55 Total: -20.24 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -5.45 Total: -108.31 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -67.79 2.40 -65.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168435589.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.897 kcal (2) G-P(sol) polarization free energy of solvation -67.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds