Wall clock time and date at job start Tue Mar 31 2020 05:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36362 * 120.08045 * 2 1 4 4 C 1.39543 * 120.16152 * 180.30420 * 3 2 1 5 5 N 1.38851 * 119.84458 * 179.73712 * 4 3 2 6 6 C 1.46503 * 120.00218 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46849 * 324.99677 * 6 5 4 8 8 C 1.53000 * 109.47151 * 84.99757 * 6 5 4 9 9 C 1.50698 * 109.47345 * 205.00110 * 6 5 4 10 10 C 1.38394 * 120.00395 * 155.00088 * 9 6 5 11 11 N 1.32124 * 119.99654 * 179.97438 * 10 9 6 12 12 C 1.32150 * 120.00326 * 359.97438 * 11 10 9 13 13 C 1.38343 * 120.00039 * 0.02562 * 12 11 10 14 14 N 1.32131 * 120.00044 * 334.72220 * 9 6 5 15 15 C 1.39593 * 120.31624 * 359.71057 * 4 3 2 16 16 C 1.36329 * 120.15530 * 0.02562 * 15 4 3 17 17 C 1.40860 * 120.08419 * 179.76169 * 2 1 3 18 18 C 1.41144 * 120.15503 * 359.97438 * 17 2 1 19 19 H 1.08002 * 119.99811 * 333.39345 * 18 17 2 20 20 C 1.39860 * 120.00171 * 153.39713 * 18 17 2 21 21 N 1.30910 * 119.99878 * 343.78686 * 20 18 17 22 22 Si 1.86800 * 120.00124 * 163.79008 * 20 18 17 23 23 H 1.48499 * 109.47155 * 59.99799 * 22 20 18 24 24 H 1.48501 * 109.47012 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46957 * 299.99887 * 22 20 18 26 26 H 1.09003 * 109.46935 * 270.24036 * 1 2 3 27 27 H 1.09004 * 109.47230 * 30.24155 * 1 2 3 28 28 H 1.09002 * 109.47102 * 150.23996 * 1 2 3 29 29 H 1.08001 * 119.92354 * 0.02562 * 3 2 1 30 30 H 0.96996 * 120.00290 * 359.97438 * 5 4 3 31 31 H 1.09000 * 109.46840 * 300.00243 * 8 6 5 32 32 H 1.08999 * 109.46892 * 60.00467 * 8 6 5 33 33 H 1.08995 * 109.46902 * 180.02562 * 8 6 5 34 34 H 1.07997 * 119.99965 * 359.97438 * 10 9 6 35 35 H 1.08004 * 119.99866 * 180.02562 * 12 11 10 36 36 H 1.08003 * 119.99541 * 180.02562 * 13 12 11 37 37 H 1.07998 * 119.92322 * 180.02562 * 15 4 3 38 38 H 1.08002 * 120.07328 * 179.97438 * 16 15 4 39 39 H 0.97001 * 119.99895 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1800 0.0000 4 6 3.5859 1.1819 -0.0064 5 7 4.2751 2.3873 -0.0119 6 6 5.7401 2.3934 -0.0181 7 1 6.1094 1.5544 0.5717 8 6 6.2446 2.2667 -1.4569 9 6 6.2397 3.6844 0.5776 10 6 7.4967 3.7400 1.1539 11 7 7.9347 4.8721 1.6756 12 6 7.1727 5.9515 1.6466 13 6 5.9162 5.8959 1.0705 14 7 5.4797 4.7648 0.5446 15 6 4.2922 -0.0221 -0.0068 16 6 3.6220 -1.2093 -0.0014 17 6 2.2131 -1.2188 0.0051 18 6 1.5125 -2.4441 0.0107 19 1 0.5186 -2.4959 0.4302 20 6 2.1053 -3.5911 -0.5269 21 7 3.1499 -3.4831 -1.3084 22 14 1.4063 -5.2773 -0.1298 23 1 -0.0026 -5.3508 -0.5932 24 1 2.2085 -6.3203 -0.8184 25 1 1.4572 -5.5013 1.3374 26 1 -0.3633 0.0043 1.0277 27 1 -0.3634 0.8878 -0.5176 28 1 -0.3633 -0.8921 -0.5101 29 1 1.6505 2.1153 0.0004 30 1 3.7867 3.2253 -0.0116 31 1 5.8833 1.3328 -1.8876 32 1 5.8754 3.1057 -2.0466 33 1 7.3346 2.2708 -1.4614 34 1 8.1195 2.8580 1.1772 35 1 7.5310 6.8770 2.0727 36 1 5.2937 6.7782 1.0465 37 1 5.3722 -0.0131 -0.0113 38 1 4.1699 -2.1400 -0.0021 39 1 3.5608 -4.2786 -1.6815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169534895.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:10 Heat of formation + Delta-G solvation = 68.055651 kcal Electronic energy + Delta-G solvation = -21112.336556 eV Core-core repulsion = 18019.503470 eV Total energy + Delta-G solvation = -3092.833086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.25235 -38.25077 -36.20392 -34.20356 -33.40746 -32.10121 -30.74273 -29.83538 -28.04142 -26.00006 -25.08681 -24.76143 -23.82134 -21.57719 -20.89742 -19.02849 -17.64599 -17.21668 -17.05735 -16.62200 -15.34333 -15.03008 -14.97131 -14.74864 -13.84021 -13.66690 -13.46169 -13.07095 -12.90970 -12.51164 -12.43822 -11.98159 -11.73303 -11.65587 -11.49327 -11.30616 -11.23816 -11.06694 -10.99419 -10.87270 -10.74776 -10.43166 -9.54152 -9.40912 -9.26638 -9.22448 -9.12210 -8.44677 -7.30865 -6.60364 -6.34074 -4.00750 0.61693 0.99824 2.93589 3.09052 3.15270 3.18757 3.37298 3.54687 3.86926 4.01603 4.07258 4.18510 4.53564 4.65167 4.78649 5.07358 5.14875 5.29499 5.43007 5.47811 5.78786 5.82111 6.04415 6.17968 6.28471 6.28900 6.45046 6.49127 6.73959 6.75338 6.93524 7.03560 7.13460 7.25261 7.39345 7.60450 7.66863 7.78230 7.86243 8.17037 8.34476 8.51876 8.74928 8.84482 9.09126 9.18612 10.40777 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.030461 B = 0.003588 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.983423 B = 7800.978799 C = 8346.769763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.156 4.156 3 C -0.156 4.156 4 C 0.099 3.901 5 N -0.748 5.748 6 C 0.213 3.787 7 H 0.093 0.907 8 C -0.163 4.163 9 C 0.090 3.910 10 C 0.054 3.946 11 N -0.436 5.436 12 C 0.034 3.966 13 C 0.054 3.946 14 N -0.431 5.431 15 C -0.172 4.172 16 C -0.119 4.119 17 C 0.078 3.922 18 C -0.464 4.464 19 H 0.074 0.926 20 C 0.075 3.925 21 N -0.809 5.809 22 Si 0.901 3.099 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.267 1.267 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.395 0.605 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.171 0.829 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.979 12.650 2.688 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.159 4.159 3 C -0.178 4.178 4 C 0.002 3.998 5 N -0.384 5.384 6 C 0.104 3.896 7 H 0.110 0.890 8 C -0.222 4.222 9 C -0.052 4.052 10 C -0.107 4.107 11 N -0.150 5.150 12 C -0.125 4.125 13 C -0.106 4.106 14 N -0.146 5.146 15 C -0.194 4.194 16 C -0.139 4.139 17 C 0.075 3.925 18 C -0.495 4.495 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.437 5.437 22 Si 0.727 3.273 23 H -0.193 1.193 24 H -0.206 1.206 25 H -0.192 1.192 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.229 0.771 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.188 0.812 35 H 0.184 0.816 36 H 0.186 0.814 37 H 0.106 0.894 38 H 0.136 0.864 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.292 12.422 2.545 14.627 hybrid contribution -0.355 -0.359 0.080 0.512 sum 6.937 12.062 2.625 14.160 Atomic orbital electron populations 1.20417 0.93716 1.00516 0.99567 1.19309 0.94147 0.92728 1.09668 1.19646 0.91489 0.96448 1.10235 1.17325 0.90641 0.84916 1.06935 1.43805 1.01932 1.05959 1.86663 1.19433 0.84102 0.90574 0.95506 0.88961 1.22306 0.99982 1.03563 0.96354 1.22696 0.92082 0.95670 0.94703 1.23551 0.94979 0.97166 0.94975 1.68445 1.34377 0.99167 1.13035 1.23721 0.92639 0.98003 0.98173 1.23789 0.95398 0.96843 0.94524 1.68148 1.34216 0.98727 1.13536 1.20094 0.97009 0.92025 1.10245 1.20907 0.94626 0.96031 1.02377 1.17338 0.91619 0.91573 0.91997 1.19324 1.02161 0.92628 1.35380 0.90821 1.25781 0.94448 1.00803 0.92996 1.69841 1.19474 1.31087 1.23303 0.86489 0.79681 0.81544 0.79614 1.19320 1.20646 1.19155 0.94067 0.94510 0.91926 0.89605 0.77055 0.90470 0.92584 0.92652 0.81236 0.81551 0.81432 0.89359 0.86448 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.80 9.39 36.01 0.34 -1.47 16 2 C -0.16 -3.80 5.90 -104.31 -0.62 -4.41 16 3 C -0.16 -3.52 9.46 -39.77 -0.38 -3.90 16 4 C 0.10 2.13 6.65 -83.69 -0.56 1.57 16 5 N -0.75 -13.28 5.19 -53.15 -0.28 -13.56 16 6 C 0.21 3.13 2.52 -69.08 -0.17 2.96 16 7 H 0.09 1.36 6.42 -51.93 -0.33 1.03 16 8 C -0.16 -2.24 9.39 37.16 0.35 -1.89 16 9 C 0.09 1.19 5.89 -82.41 -0.49 0.70 16 10 C 0.05 0.63 10.90 -17.37 -0.19 0.44 16 11 N -0.44 -5.11 10.50 -13.06 -0.14 -5.25 16 12 C 0.03 0.32 11.22 -17.38 -0.20 0.13 16 13 C 0.05 0.54 11.22 -17.38 -0.20 0.35 16 14 N -0.43 -5.68 9.22 -9.28 -0.09 -5.77 16 15 C -0.17 -3.90 8.74 -39.76 -0.35 -4.25 16 16 C -0.12 -3.07 8.62 -39.26 -0.34 -3.41 16 17 C 0.08 2.06 5.56 -106.80 -0.59 1.46 16 18 C -0.46 -12.33 8.09 -37.87 -0.31 -12.64 16 19 H 0.07 1.89 6.90 -52.49 -0.36 1.53 16 20 C 0.07 1.90 5.15 -17.34 -0.09 1.81 16 21 N -0.81 -21.23 10.97 55.54 0.61 -20.62 16 22 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 28 H 0.06 1.36 6.79 -51.93 -0.35 1.01 16 29 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 30 H 0.39 6.85 7.65 -40.82 -0.31 6.54 16 31 H 0.08 1.21 7.66 -51.93 -0.40 0.81 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.17 1.11 8.06 -52.48 -0.42 0.68 16 37 H 0.09 1.78 6.04 -52.49 -0.32 1.46 16 38 H 0.12 3.13 6.23 -52.49 -0.33 2.80 16 39 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 LS Contribution 326.23 15.07 4.92 4.92 Total: -1.00 -29.45 326.23 -8.69 -38.14 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -4.92 Total: 10.57 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -3.78 Total: -22.54 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.11 Total: -45.20 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.45 -8.69 -38.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169534895.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.200 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds