Wall clock time and date at job start Tue Mar 31 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47225 * 2 1 4 4 N 1.46501 * 109.46982 * 120.00550 * 2 1 3 5 5 C 1.38819 * 120.00135 * 62.77861 * 4 2 1 6 6 C 1.39799 * 119.58717 * 5.63338 * 5 4 2 7 7 C 1.38597 * 119.49401 * 179.97438 * 6 5 4 8 8 C 1.38394 * 118.67778 * 359.97438 * 7 6 5 9 9 C 1.40553 * 119.15007 * 0.02562 * 8 7 6 10 10 C 1.41311 * 119.78540 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99601 * 359.97438 * 10 9 8 12 12 C 1.40022 * 120.00406 * 179.97438 * 10 9 8 13 13 N 1.30746 * 119.99797 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00145 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47349 * 0.02562 * 14 12 10 16 16 H 1.48510 * 109.47116 * 120.00180 * 14 12 10 17 17 H 1.48504 * 109.47445 * 240.00074 * 14 12 10 18 18 N 1.31951 * 119.58426 * 185.34976 * 5 4 2 19 19 C 1.50700 * 109.46839 * 240.00107 * 2 1 3 20 20 C 1.38652 * 120.79163 * 220.82131 * 19 2 1 21 21 C 1.38196 * 119.16565 * 179.80057 * 20 19 2 22 22 N 1.31871 * 120.76361 * 0.48742 * 21 20 19 23 23 C 1.31870 * 121.72422 * 359.74354 * 22 21 20 24 24 C 1.38203 * 120.76499 * 0.02562 * 23 22 21 25 25 H 1.08999 * 109.46835 * 304.42054 * 1 2 3 26 26 H 1.09008 * 109.46964 * 64.41726 * 1 2 3 27 27 H 1.08999 * 109.47477 * 184.41717 * 1 2 3 28 28 H 1.09004 * 109.47169 * 175.60946 * 3 2 1 29 29 H 1.08997 * 109.47458 * 295.61416 * 3 2 1 30 30 H 1.08996 * 109.47119 * 55.61666 * 3 2 1 31 31 H 0.97000 * 119.99667 * 243.05500 * 4 2 1 32 32 H 1.08002 * 120.24989 * 359.95113 * 6 5 4 33 33 H 1.07992 * 120.66093 * 180.02562 * 7 6 5 34 34 H 1.07993 * 120.41899 * 179.97438 * 8 7 6 35 35 H 0.96999 * 119.99895 * 179.97438 * 13 12 10 36 36 H 1.08006 * 120.41526 * 0.02562 * 20 19 2 37 37 H 1.08002 * 119.62004 * 180.25481 * 21 20 19 38 38 H 1.08000 * 119.61292 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.41281 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7312 -2.0354 1.3870 6 6 1.0784 -2.7516 0.3794 7 6 0.7931 -4.0942 0.5717 8 6 1.1670 -4.6883 1.7644 9 6 1.8208 -3.9150 2.7391 10 6 2.2090 -4.5081 3.9616 11 1 2.0027 -5.5524 4.1446 12 6 2.8610 -3.7421 4.9356 13 7 3.1103 -2.4779 4.7142 14 14 3.3735 -4.5261 6.5517 15 1 2.9788 -5.9576 6.5547 16 1 4.8464 -4.4189 6.7089 17 1 2.7035 -3.8251 7.6764 18 7 2.0829 -2.6230 2.5149 19 6 2.0323 -0.7104 -1.2305 20 6 3.1186 -1.5691 -1.1606 21 6 3.5485 -2.2062 -2.3091 22 7 2.9442 -1.9978 -3.4625 23 6 1.9113 -1.1846 -3.5672 24 6 1.4227 -0.5163 -2.4606 25 1 -0.3633 0.5809 0.8477 26 1 -0.3633 0.4438 -0.9270 27 1 -0.3634 -1.0246 0.0791 28 1 3.1272 1.4434 0.0787 29 1 1.7423 1.9331 -0.9266 30 1 1.6140 1.9784 0.8481 31 1 2.5388 -0.2074 1.8567 32 1 0.7981 -2.2623 -0.5418 33 1 0.2899 -4.6656 -0.1942 34 1 0.9583 -5.7326 1.9441 35 1 3.5617 -1.9472 5.3890 36 1 3.6203 -1.7407 -0.2196 37 1 4.3914 -2.8798 -2.2623 38 1 1.4419 -1.0393 -4.5289 39 1 0.5768 0.1487 -2.5529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171514723.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:12 Heat of formation + Delta-G solvation = 84.420214 kcal Electronic energy + Delta-G solvation = -22288.710482 eV Core-core repulsion = 19196.587016 eV Total energy + Delta-G solvation = -3092.123466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46171 -38.36141 -36.72284 -33.56170 -32.23015 -31.03992 -30.57474 -30.15610 -28.15694 -27.29745 -25.23153 -23.75659 -22.97238 -21.38146 -21.12323 -19.56041 -17.48740 -16.64368 -16.29851 -15.90683 -15.29995 -14.91425 -14.62798 -14.44275 -13.88381 -13.60119 -13.44073 -13.33695 -13.05615 -12.55326 -12.32804 -12.13324 -11.94774 -11.82140 -11.38891 -11.30548 -11.11183 -11.06763 -10.95727 -10.62154 -10.42949 -9.93973 -9.60067 -9.22136 -9.05057 -8.91309 -8.79696 -7.89529 -7.53302 -6.57976 -6.34973 -4.47478 1.44046 1.56770 2.84662 3.10465 3.14800 3.21756 3.27588 3.96709 4.00261 4.11210 4.67934 4.72002 4.84724 5.01985 5.17278 5.25706 5.36757 5.53111 5.63742 5.77674 5.83703 5.96289 5.97414 6.04455 6.07615 6.11517 6.16858 6.33979 6.50420 6.63527 6.65845 6.83886 6.89633 6.95619 7.01110 7.23197 7.58726 7.79173 7.91905 8.14746 8.24798 8.33462 8.64384 8.78374 9.09956 10.21840 10.37889 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.005128 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.507087 B = 5458.423667 C = 5871.027210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.228 3.772 3 C -0.146 4.146 4 N -0.730 5.730 5 C 0.411 3.589 6 C -0.361 4.361 7 C -0.035 4.035 8 C -0.315 4.315 9 C 0.291 3.709 10 C -0.434 4.434 11 H 0.083 0.917 12 C 0.072 3.928 13 N -0.717 5.717 14 Si 0.903 3.097 15 H -0.261 1.261 16 H -0.274 1.274 17 H -0.274 1.274 18 N -0.529 5.529 19 C -0.031 4.031 20 C -0.128 4.128 21 C 0.091 3.909 22 N -0.493 5.493 23 C 0.087 3.913 24 C -0.177 4.177 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.398 0.602 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.268 0.732 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.391 7.421 -8.435 11.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.138 3.862 3 C -0.204 4.204 4 N -0.367 5.367 5 C 0.172 3.828 6 C -0.387 4.387 7 C -0.059 4.059 8 C -0.338 4.338 9 C 0.165 3.835 10 C -0.466 4.466 11 H 0.101 0.899 12 C -0.153 4.153 13 N -0.338 5.338 14 Si 0.728 3.272 15 H -0.185 1.185 16 H -0.199 1.199 17 H -0.200 1.200 18 N -0.250 5.250 19 C -0.041 4.041 20 C -0.148 4.148 21 C -0.065 4.065 22 N -0.202 5.202 23 C -0.071 4.071 24 C -0.197 4.197 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.233 0.767 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.646 7.634 -8.580 11.503 hybrid contribution -0.413 -0.333 1.095 1.217 sum -1.059 7.300 -7.485 10.509 Atomic orbital electron populations 1.22457 0.94395 1.04339 1.01346 1.18812 0.93645 0.90770 0.82931 1.21995 1.01839 0.93850 1.02727 1.44282 1.61315 1.08117 1.22973 1.18421 0.89862 0.84291 0.90269 1.20918 1.20277 0.96013 1.01460 1.20606 0.95789 0.93985 0.95516 1.21526 1.14834 0.99833 0.97565 1.18180 0.87118 0.86472 0.91766 1.19611 1.31834 0.97156 0.98029 0.89932 1.26029 0.94738 0.94644 0.99858 1.70153 1.25504 1.06198 1.31993 0.86343 0.78795 0.80559 0.81515 1.18459 1.19949 1.19966 1.68217 1.27486 1.11536 1.17722 1.20603 0.93764 0.94937 0.94780 1.22072 0.96786 0.95924 1.00061 1.22651 0.98554 0.97399 0.87857 1.67598 1.08779 1.15994 1.27837 1.22564 0.93162 0.93119 0.98226 1.21911 1.01797 1.02740 0.93275 0.92108 0.92356 0.90210 0.91859 0.91258 0.91374 0.76674 0.88304 0.89296 0.88865 0.92042 0.84536 0.83329 0.83455 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 8.02 37.16 0.30 -2.09 16 2 C 0.23 3.37 0.92 -132.97 -0.12 3.24 16 3 C -0.15 -1.70 8.57 37.15 0.32 -1.38 16 4 N -0.73 -13.64 4.49 -48.78 -0.22 -13.86 16 5 C 0.41 9.43 6.07 -155.33 -0.94 8.49 16 6 C -0.36 -7.99 6.22 -38.87 -0.24 -8.23 16 7 C -0.03 -0.80 10.15 -39.39 -0.40 -1.20 16 8 C -0.31 -7.92 9.83 -38.65 -0.38 -8.30 16 9 C 0.29 7.98 6.55 -85.00 -0.56 7.42 16 10 C -0.43 -11.66 9.13 -37.75 -0.34 -12.01 16 11 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 12 C 0.07 1.83 5.50 -17.35 -0.10 1.73 16 13 N -0.72 -18.68 11.46 55.55 0.64 -18.05 16 14 Si 0.90 18.60 29.56 -169.99 -5.02 13.57 16 15 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 16 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 17 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 18 N -0.53 -14.07 7.89 -10.33 -0.08 -14.15 16 19 C -0.03 -0.47 2.50 -104.32 -0.26 -0.73 16 20 C -0.13 -2.17 7.44 -39.44 -0.29 -2.47 16 21 C 0.09 1.47 11.18 -17.55 -0.20 1.27 16 22 N -0.49 -7.81 10.36 -13.25 -0.14 -7.95 16 23 C 0.09 1.18 11.18 -17.55 -0.20 0.98 16 24 C -0.18 -2.34 9.17 -39.44 -0.36 -2.70 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.66 6.50 -51.92 -0.34 0.33 16 27 H 0.08 1.37 5.41 -51.93 -0.28 1.09 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.40 7.46 8.60 -40.82 -0.35 7.11 16 32 H 0.10 2.02 4.05 -52.49 -0.21 1.81 16 33 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 34 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.27 6.35 8.29 -40.82 -0.34 6.01 16 36 H 0.14 2.60 6.58 -52.48 -0.35 2.25 16 37 H 0.15 2.14 8.06 -52.49 -0.42 1.71 16 38 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.13 1.37 6.59 -52.49 -0.35 1.02 16 LS Contribution 316.17 15.07 4.76 4.76 Total: -1.00 -29.57 316.17 -8.64 -38.21 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -4.80 Total: 13.44 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -3.78 Total: -15.97 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.20 Total: -54.01 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.57 -8.64 -38.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171514723.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.630 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds