Wall clock time and date at job start Tue Mar 31 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47134 * 2 1 4 4 N 1.46498 * 109.47240 * 120.00359 * 2 1 3 5 5 C 1.32211 * 119.99967 * 61.28942 * 4 2 1 6 6 C 1.46916 * 120.83222 * 5.63124 * 5 4 2 7 7 C 1.34378 * 119.36589 * 180.22611 * 6 5 4 8 8 N 1.36431 * 121.22045 * 359.47078 * 7 6 5 9 9 H 0.96995 * 119.08574 * 180.31147 * 8 7 6 10 10 C 1.37766 * 121.82055 * 0.56308 * 8 7 6 11 11 C 1.40179 * 119.74203 * 179.72074 * 10 8 7 12 12 H 1.08000 * 119.99898 * 205.47011 * 11 10 8 13 13 C 1.40346 * 120.00002 * 25.47339 * 11 10 8 14 14 N 1.30587 * 120.00038 * 14.11591 * 13 11 10 15 15 Si 1.86798 * 120.00050 * 194.11350 * 13 11 10 16 16 H 1.48498 * 109.47130 * 90.00147 * 15 13 11 17 17 H 1.48498 * 109.47521 * 210.00301 * 15 13 11 18 18 H 1.48505 * 109.47278 * 330.00328 * 15 13 11 19 19 C 1.39067 * 120.51237 * 359.70316 * 10 8 7 20 20 C 1.50696 * 109.46781 * 240.00397 * 2 1 3 21 21 C 1.38656 * 120.79095 * 29.71936 * 20 2 1 22 22 C 1.38205 * 119.16114 * 179.80129 * 21 20 2 23 23 N 1.31867 * 120.76619 * 0.47815 * 22 21 20 24 24 C 1.31875 * 121.72469 * 359.75124 * 23 22 21 25 25 C 1.38202 * 120.76422 * 0.02562 * 24 23 22 26 26 H 1.09002 * 109.46485 * 299.26314 * 1 2 3 27 27 H 1.08996 * 109.47083 * 59.26109 * 1 2 3 28 28 H 1.08995 * 109.47199 * 179.26525 * 1 2 3 29 29 H 1.09000 * 109.47152 * 184.51848 * 3 2 1 30 30 H 1.08999 * 109.47138 * 304.52329 * 3 2 1 31 31 H 1.09006 * 109.46852 * 64.52064 * 3 2 1 32 32 H 1.08001 * 120.31963 * 359.95801 * 6 5 4 33 33 H 1.08001 * 119.38891 * 179.72516 * 7 6 5 34 34 H 0.97001 * 120.00192 * 179.97438 * 14 13 11 35 35 H 1.07995 * 120.63054 * 180.02562 * 19 10 8 36 36 H 1.07998 * 120.41971 * 359.97438 * 21 20 2 37 37 H 1.08004 * 119.61768 * 180.20949 * 22 21 20 38 38 H 1.07996 * 119.61563 * 179.97438 * 24 23 22 39 39 H 1.08003 * 120.41949 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7202 -1.9637 1.3924 6 6 1.0060 -2.7365 0.3672 7 6 0.7138 -4.0274 0.5996 8 7 1.0774 -4.6360 1.7652 9 1 0.8547 -5.5706 1.8986 10 6 1.7478 -3.9586 2.7600 11 6 2.0954 -4.6255 3.9430 12 1 2.2315 -4.0673 4.8575 13 6 2.2665 -6.0185 3.9390 14 7 2.3765 -6.6595 2.8066 15 14 2.3369 -6.9555 5.5534 16 1 0.9665 -7.3744 5.9428 17 1 3.1945 -8.1570 5.3915 18 1 2.9058 -6.0801 6.6095 19 6 2.0827 -2.6184 2.5995 20 6 2.0323 -0.7103 -1.2305 21 6 1.2935 -0.7058 -2.4039 22 6 1.7881 -1.3647 -3.5135 23 7 2.9426 -1.9998 -3.4620 24 6 3.6695 -2.0290 -2.3621 25 6 3.2413 -1.3889 -1.2145 26 1 -0.3632 0.5024 0.8966 27 1 -0.3633 0.5252 -0.8833 28 1 -0.3633 -1.0275 -0.0132 29 1 3.1270 1.4436 -0.0810 30 1 1.6120 1.9792 -0.8467 31 1 1.7443 1.9324 0.9278 32 1 0.7147 -2.2705 -0.5625 33 1 0.1848 -4.5946 -0.1519 34 1 2.4952 -7.6223 2.8038 35 1 2.6086 -2.0857 3.3779 36 1 0.3450 -0.1916 -2.4509 37 1 1.2203 -1.3631 -4.4323 38 1 4.6100 -2.5599 -2.3578 39 1 3.8413 -1.4160 -0.3169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171517718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:17 Heat of formation + Delta-G solvation = 74.481319 kcal Electronic energy + Delta-G solvation = -22051.781382 eV Core-core repulsion = 18959.226934 eV Total energy + Delta-G solvation = -3092.554449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.10153 -38.56996 -36.57860 -34.02900 -32.27498 -30.81793 -30.59745 -30.46365 -27.83912 -26.79203 -25.94212 -23.39321 -22.76876 -21.50452 -21.26948 -19.08996 -17.92844 -16.70688 -16.40712 -15.81560 -15.49992 -15.10757 -14.94180 -14.22130 -13.78827 -13.50297 -13.34041 -13.15120 -13.06753 -12.73567 -12.61918 -11.85047 -11.74966 -11.67401 -11.57515 -11.29357 -11.13296 -11.07766 -10.89921 -10.70138 -10.54214 -10.19299 -9.74800 -9.54999 -9.05185 -8.83114 -8.68668 -8.23115 -7.61070 -7.31190 -6.04260 -4.85596 1.56468 1.76149 2.55867 2.68663 2.86155 2.90760 3.10827 3.61998 4.21604 4.26185 4.58469 4.81854 5.08032 5.15858 5.34237 5.51419 5.54459 5.63635 5.67335 5.76649 5.85408 6.05191 6.11661 6.22731 6.26272 6.28629 6.36662 6.48765 6.53360 6.64292 6.73220 6.76644 6.81106 6.90836 7.00029 7.17090 7.35786 7.63499 7.71931 7.91934 8.20497 8.25603 8.36017 8.74895 8.86584 9.64294 9.68782 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.004800 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.010397 B = 5831.480407 C = 6381.546180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 C -0.111 4.111 4 N -0.660 5.660 5 C 0.293 3.707 6 C -0.298 4.298 7 C 0.121 3.879 8 N -0.598 5.598 9 H 0.413 0.587 10 C 0.334 3.666 11 C -0.468 4.468 12 H 0.103 0.897 13 C 0.077 3.923 14 N -0.815 5.815 15 Si 0.925 3.075 16 H -0.265 1.265 17 H -0.275 1.275 18 H -0.256 1.256 19 C -0.356 4.356 20 C -0.020 4.020 21 C -0.188 4.188 22 C 0.086 3.914 23 N -0.499 5.499 24 C 0.090 3.910 25 C -0.144 4.144 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.292 0.708 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 2.349 -4.966 6.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 C -0.169 4.169 4 N -0.387 5.387 5 C 0.132 3.868 6 C -0.328 4.328 7 C -0.009 4.009 8 N -0.208 5.208 9 H 0.253 0.747 10 C 0.225 3.775 11 C -0.501 4.501 12 H 0.121 0.879 13 C -0.142 4.142 14 N -0.443 5.443 15 Si 0.749 3.251 16 H -0.190 1.190 17 H -0.200 1.200 18 H -0.180 1.180 19 C -0.385 4.385 20 C -0.029 4.029 21 C -0.209 4.209 22 C -0.071 4.071 23 N -0.209 5.209 24 C -0.066 4.066 25 C -0.164 4.164 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.640 2.525 -5.492 6.596 hybrid contribution -0.846 -1.059 0.569 1.470 sum -3.487 1.466 -4.924 6.209 Atomic orbital electron populations 1.22467 0.96568 1.02318 1.00583 1.19746 0.92346 0.94282 0.88005 1.21497 1.00605 0.94342 1.00458 1.73643 1.36000 1.08722 1.20367 1.20148 0.86068 0.89982 0.90620 1.22694 1.12736 0.94973 1.02416 1.21287 0.96563 0.94460 0.88600 1.42078 1.49685 1.15081 1.13968 0.74710 1.17656 0.84554 0.90039 0.85255 1.19528 1.42576 0.91628 0.96334 0.87903 1.26183 0.90759 0.98180 0.99056 1.69325 1.35646 1.11486 1.27833 0.85998 0.79376 0.78808 0.80965 1.18963 1.19977 1.17991 1.20228 1.23786 0.94189 1.00301 1.21168 0.93022 0.93216 0.95512 1.22092 1.01665 1.02970 0.94127 1.22560 0.92637 0.94144 0.97771 1.67588 1.06604 1.18136 1.28570 1.22648 0.98771 0.96622 0.88532 1.22078 0.97256 0.97526 0.99565 0.92577 0.93813 0.91730 0.93127 0.93922 0.92231 0.86001 0.85522 0.89630 0.86826 0.85415 0.83738 0.83530 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 7.61 37.16 0.28 -2.47 16 2 C 0.15 2.79 0.93 -132.97 -0.12 2.67 16 3 C -0.11 -1.87 8.78 37.16 0.33 -1.54 16 4 N -0.66 -14.73 9.40 -45.70 -0.43 -15.16 16 5 C 0.29 6.75 5.70 -82.74 -0.47 6.27 16 6 C -0.30 -6.19 6.77 -37.43 -0.25 -6.45 16 7 C 0.12 2.38 11.15 -16.87 -0.19 2.19 16 8 N -0.60 -12.82 4.86 -10.83 -0.05 -12.87 16 9 H 0.41 8.53 6.44 -40.82 -0.26 8.27 16 10 C 0.33 7.92 6.34 -84.16 -0.53 7.39 16 11 C -0.47 -10.81 9.04 -38.06 -0.34 -11.15 16 12 H 0.10 2.32 7.89 -52.49 -0.41 1.91 16 13 C 0.08 1.63 5.21 -17.29 -0.09 1.54 16 14 N -0.82 -17.64 11.13 55.57 0.62 -17.02 16 15 Si 0.93 16.19 29.58 -169.99 -5.03 11.16 16 16 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 17 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 18 H -0.26 -4.54 7.11 56.52 0.40 -4.13 16 19 C -0.36 -8.71 9.83 -37.82 -0.37 -9.08 16 20 C -0.02 -0.35 2.52 -104.32 -0.26 -0.62 16 21 C -0.19 -2.93 8.57 -39.44 -0.34 -3.27 16 22 C 0.09 1.31 11.18 -17.55 -0.20 1.11 16 23 N -0.50 -8.56 10.36 -13.25 -0.14 -8.70 16 24 C 0.09 1.56 11.18 -17.55 -0.20 1.36 16 25 C -0.14 -2.70 8.19 -39.44 -0.32 -3.02 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.04 0.62 6.64 -51.93 -0.34 0.28 16 28 H 0.06 1.16 5.17 -51.93 -0.27 0.89 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.12 2.41 3.79 -52.49 -0.20 2.21 16 33 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.29 5.74 8.29 -40.82 -0.34 5.40 16 35 H 0.11 2.85 8.06 -52.49 -0.42 2.43 16 36 H 0.13 1.72 6.32 -52.49 -0.33 1.38 16 37 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 38 H 0.15 2.22 8.06 -52.49 -0.42 1.79 16 39 H 0.14 2.78 7.37 -52.48 -0.39 2.39 16 LS Contribution 316.35 15.07 4.77 4.77 Total: -1.00 -25.82 316.35 -8.07 -33.89 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -4.72 Total: 18.99 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -3.08 Total: -15.07 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.00 Total: -53.74 kcal Atomic # 14 Polarization: 16.19 SS G_CDS: -5.03 Total: 11.16 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -25.82 -8.07 -33.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171517718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.376 kcal (2) G-P(sol) polarization free energy of solvation -25.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds