Wall clock time and date at job start Tue Mar 31 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47134 * 2 1 4 4 N 1.46498 * 109.47240 * 120.00359 * 2 1 3 5 5 C 1.32211 * 119.99967 * 61.28942 * 4 2 1 6 6 C 1.46916 * 120.83222 * 5.63124 * 5 4 2 7 7 C 1.34378 * 119.36589 * 180.22611 * 6 5 4 8 8 N 1.36431 * 121.22045 * 359.47078 * 7 6 5 9 9 H 0.96995 * 119.08574 * 180.31147 * 8 7 6 10 10 C 1.37766 * 121.82055 * 0.56308 * 8 7 6 11 11 C 1.40179 * 119.74203 * 179.72074 * 10 8 7 12 12 H 1.08000 * 119.99898 * 205.47011 * 11 10 8 13 13 C 1.40346 * 120.00002 * 25.47339 * 11 10 8 14 14 N 1.30587 * 120.00038 * 14.11591 * 13 11 10 15 15 Si 1.86798 * 120.00050 * 194.11350 * 13 11 10 16 16 H 1.48498 * 109.47130 * 90.00147 * 15 13 11 17 17 H 1.48498 * 109.47521 * 210.00301 * 15 13 11 18 18 H 1.48505 * 109.47278 * 330.00328 * 15 13 11 19 19 C 1.39067 * 120.51237 * 359.70316 * 10 8 7 20 20 C 1.50696 * 109.46781 * 240.00397 * 2 1 3 21 21 C 1.38656 * 120.79095 * 29.71936 * 20 2 1 22 22 C 1.38205 * 119.16114 * 179.80129 * 21 20 2 23 23 N 1.31867 * 120.76619 * 0.47815 * 22 21 20 24 24 C 1.31875 * 121.72469 * 359.75124 * 23 22 21 25 25 C 1.38202 * 120.76422 * 0.02562 * 24 23 22 26 26 H 1.09002 * 109.46485 * 299.26314 * 1 2 3 27 27 H 1.08996 * 109.47083 * 59.26109 * 1 2 3 28 28 H 1.08995 * 109.47199 * 179.26525 * 1 2 3 29 29 H 1.09000 * 109.47152 * 184.51848 * 3 2 1 30 30 H 1.08999 * 109.47138 * 304.52329 * 3 2 1 31 31 H 1.09006 * 109.46852 * 64.52064 * 3 2 1 32 32 H 1.08001 * 120.31963 * 359.95801 * 6 5 4 33 33 H 1.08001 * 119.38891 * 179.72516 * 7 6 5 34 34 H 0.97001 * 120.00192 * 179.97438 * 14 13 11 35 35 H 1.07995 * 120.63054 * 180.02562 * 19 10 8 36 36 H 1.07998 * 120.41971 * 359.97438 * 21 20 2 37 37 H 1.08004 * 119.61768 * 180.20949 * 22 21 20 38 38 H 1.07996 * 119.61563 * 179.97438 * 24 23 22 39 39 H 1.08003 * 120.41949 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7202 -1.9637 1.3924 6 6 1.0060 -2.7365 0.3672 7 6 0.7138 -4.0274 0.5996 8 7 1.0774 -4.6360 1.7652 9 1 0.8547 -5.5706 1.8986 10 6 1.7478 -3.9586 2.7600 11 6 2.0954 -4.6255 3.9430 12 1 2.2315 -4.0673 4.8575 13 6 2.2665 -6.0185 3.9390 14 7 2.3765 -6.6595 2.8066 15 14 2.3369 -6.9555 5.5534 16 1 0.9665 -7.3744 5.9428 17 1 3.1945 -8.1570 5.3915 18 1 2.9058 -6.0801 6.6095 19 6 2.0827 -2.6184 2.5995 20 6 2.0323 -0.7103 -1.2305 21 6 1.2935 -0.7058 -2.4039 22 6 1.7881 -1.3647 -3.5135 23 7 2.9426 -1.9998 -3.4620 24 6 3.6695 -2.0290 -2.3621 25 6 3.2413 -1.3889 -1.2145 26 1 -0.3632 0.5024 0.8966 27 1 -0.3633 0.5252 -0.8833 28 1 -0.3633 -1.0275 -0.0132 29 1 3.1270 1.4436 -0.0810 30 1 1.6120 1.9792 -0.8467 31 1 1.7443 1.9324 0.9278 32 1 0.7147 -2.2705 -0.5625 33 1 0.1848 -4.5946 -0.1519 34 1 2.4952 -7.6223 2.8038 35 1 2.6086 -2.0857 3.3779 36 1 0.3450 -0.1916 -2.4509 37 1 1.2203 -1.3631 -4.4323 38 1 4.6100 -2.5599 -2.3578 39 1 3.8413 -1.4160 -0.3169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171517718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:16 Heat of formation + Delta-G solvation = 59.994231 kcal Electronic energy + Delta-G solvation = -22052.409590 eV Core-core repulsion = 18959.226934 eV Total energy + Delta-G solvation = -3093.182656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.46531 -40.19295 -38.05309 -35.68659 -33.87489 -32.30380 -32.11929 -31.82511 -29.46387 -28.20057 -27.62206 -24.75834 -24.07453 -23.16245 -22.87217 -20.60269 -19.52954 -18.40923 -17.86317 -17.22355 -16.96445 -16.53673 -16.40670 -15.75420 -15.24947 -14.90210 -14.72296 -14.65599 -14.47390 -14.30351 -14.08782 -13.33402 -13.27078 -13.10354 -13.03009 -12.81489 -12.65438 -12.56063 -12.33561 -12.17503 -12.04985 -11.75969 -11.33172 -11.16480 -10.37559 -10.19599 -10.02502 -9.89732 -9.23885 -8.95820 -7.73354 -6.64926 0.27961 0.42803 0.96409 1.07334 1.41427 1.54470 1.60517 2.15401 2.55809 2.92737 2.96745 3.46718 3.62526 3.78381 3.92910 4.09719 4.21170 4.26956 4.33049 4.41113 4.45634 4.67634 4.74847 4.81161 4.90310 4.92747 4.96897 5.00359 5.05621 5.07494 5.14808 5.17862 5.39333 5.45454 5.63767 5.67729 5.87019 5.89214 6.00226 6.11706 6.49964 6.53046 7.01665 7.07937 7.18388 7.99008 8.05732 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.004800 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.010397 B = 5831.480407 C = 6381.546180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 C -0.108 4.108 4 N -0.685 5.685 5 C 0.282 3.718 6 C -0.302 4.302 7 C 0.121 3.879 8 N -0.599 5.599 9 H 0.416 0.584 10 C 0.323 3.677 11 C -0.497 4.497 12 H 0.095 0.905 13 C 0.050 3.950 14 N -0.828 5.828 15 Si 0.994 3.006 16 H -0.254 1.254 17 H -0.266 1.266 18 H -0.263 1.263 19 C -0.398 4.398 20 C -0.028 4.028 21 C -0.182 4.182 22 C 0.092 3.908 23 N -0.511 5.511 24 C 0.086 3.914 25 C -0.165 4.165 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.136 0.864 33 H 0.170 0.830 34 H 0.304 0.696 35 H 0.086 0.914 36 H 0.157 0.843 37 H 0.185 0.815 38 H 0.159 0.841 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.039 1.471 -6.838 8.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.046 3.954 3 C -0.165 4.165 4 N -0.411 5.411 5 C 0.119 3.881 6 C -0.332 4.332 7 C -0.008 4.008 8 N -0.209 5.209 9 H 0.257 0.743 10 C 0.214 3.786 11 C -0.529 4.529 12 H 0.113 0.887 13 C -0.168 4.168 14 N -0.456 5.456 15 Si 0.815 3.185 16 H -0.178 1.178 17 H -0.191 1.191 18 H -0.187 1.187 19 C -0.427 4.427 20 C -0.037 4.037 21 C -0.202 4.202 22 C -0.065 4.065 23 N -0.221 5.221 24 C -0.069 4.069 25 C -0.185 4.185 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.187 0.813 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.175 0.825 37 H 0.202 0.798 38 H 0.176 0.824 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.239 1.666 -7.392 8.683 hybrid contribution -0.312 -0.728 1.084 1.342 sum -4.551 0.938 -6.309 7.835 Atomic orbital electron populations 1.22376 0.94984 1.02094 1.01744 1.19909 0.93599 0.94642 0.87200 1.21487 0.99910 0.93700 1.01443 1.73501 1.35775 1.08981 1.22867 1.20165 0.86649 0.90513 0.90750 1.22703 1.12830 0.95335 1.02289 1.21870 0.95795 0.94566 0.88549 1.42037 1.49638 1.15092 1.14175 0.74348 1.17754 0.84743 0.89970 0.86167 1.19713 1.44051 0.93026 0.96113 0.88709 1.26885 0.89611 0.97964 1.02323 1.69321 1.34431 1.12443 1.29366 0.84976 0.79783 0.77270 0.76516 1.17846 1.19074 1.18698 1.20186 1.26165 0.95246 1.01090 1.21087 0.93079 0.93433 0.96102 1.22347 1.02232 1.02614 0.92975 1.23218 0.91886 0.92345 0.99022 1.67680 1.07511 1.18804 1.28069 1.22791 0.99421 0.96457 0.88221 1.21898 0.97996 0.99552 0.99070 0.93641 0.90301 0.92649 0.94444 0.90934 0.92833 0.84644 0.81286 0.88405 0.89541 0.82516 0.79806 0.82416 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 7.61 71.98 0.55 -4.44 16 2 C 0.14 5.14 0.93 2.86 0.00 5.14 16 3 C -0.11 -3.56 8.78 71.98 0.63 -2.93 16 4 N -0.68 -31.79 9.40 -298.50 -2.81 -34.60 16 5 C 0.28 13.52 5.70 42.30 0.24 13.76 16 6 C -0.30 -12.48 6.77 23.66 0.16 -12.32 16 7 C 0.12 4.66 11.15 83.10 0.93 5.58 16 8 N -0.60 -25.80 4.86 -188.18 -0.91 -26.72 16 9 H 0.42 17.04 6.44 -92.71 -0.60 16.44 16 10 C 0.32 15.97 6.34 38.88 0.25 16.22 16 11 C -0.50 -23.81 9.04 23.25 0.21 -23.60 16 12 H 0.09 4.53 7.89 -2.91 -0.02 4.51 16 13 C 0.05 2.10 5.21 85.39 0.45 2.55 16 14 N -0.83 -35.31 11.13 21.89 0.24 -35.07 16 15 Si 0.99 32.55 29.58 68.60 2.03 34.58 16 16 H -0.25 -7.90 7.11 99.48 0.71 -7.19 16 17 H -0.27 -8.33 7.11 99.48 0.71 -7.62 16 18 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 19 C -0.40 -20.78 9.83 23.41 0.23 -20.55 16 20 C -0.03 -0.96 2.52 -19.67 -0.05 -1.01 16 21 C -0.18 -5.03 8.57 22.36 0.19 -4.84 16 22 C 0.09 2.46 11.18 84.68 0.95 3.40 16 23 N -0.51 -16.29 10.36 -195.84 -2.03 -18.32 16 24 C 0.09 2.94 11.18 84.68 0.95 3.89 16 25 C -0.16 -6.24 8.19 22.36 0.18 -6.05 16 26 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.08 1.96 6.64 -2.39 -0.02 1.94 16 28 H 0.05 1.89 5.17 -2.39 -0.01 1.88 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.79 8.14 -2.38 -0.02 1.78 16 32 H 0.14 5.15 3.79 -2.91 -0.01 5.14 16 33 H 0.17 4.95 8.06 -2.91 -0.02 4.93 16 34 H 0.30 11.50 8.29 -92.71 -0.77 10.73 16 35 H 0.09 4.79 8.06 -2.91 -0.02 4.76 16 36 H 0.16 3.39 6.32 -2.91 -0.02 3.37 16 37 H 0.19 3.41 8.06 -2.91 -0.02 3.38 16 38 H 0.16 4.78 8.06 -2.91 -0.02 4.75 16 39 H 0.10 4.54 7.37 -2.91 -0.02 4.52 16 Total: -1.00 -58.28 316.35 2.87 -55.41 By element: Atomic # 1 Polarization: 49.42 SS G_CDS: 0.48 Total: 49.91 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 5.86 Total: -25.19 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -5.51 Total: -114.70 kcal Atomic # 14 Polarization: 32.55 SS G_CDS: 2.03 Total: 34.58 kcal Total: -58.28 2.87 -55.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171517718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.409 kcal (2) G-P(sol) polarization free energy of solvation -58.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds