Wall clock time and date at job start Tue Mar 31 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.52998 * 109.47083 * 239.99708 * 2 1 3 5 5 C 1.52999 * 109.47250 * 175.00055 * 4 2 1 6 6 C 1.50696 * 109.47698 * 180.02562 * 5 4 2 7 7 H 1.08006 * 119.99660 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00508 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00038 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00050 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47069 * 89.99955 * 10 8 6 12 12 H 1.48501 * 109.47178 * 210.00451 * 10 8 6 13 13 H 1.48502 * 109.46943 * 330.00320 * 10 8 6 14 14 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 15 15 C 1.46899 * 111.00029 * 275.00154 * 14 2 1 16 16 C 1.50703 * 109.47107 * 179.97438 * 15 14 2 17 17 C 1.38258 * 119.99670 * 269.72376 * 16 15 14 18 18 C 1.38215 * 119.99489 * 179.78517 * 17 16 15 19 19 C 1.38252 * 120.00302 * 0.44496 * 18 17 16 20 20 C 1.38212 * 119.99840 * 359.81219 * 19 18 17 21 21 C 1.50702 * 119.99912 * 179.97438 * 20 19 18 22 22 F 1.39907 * 109.47059 * 119.97817 * 21 20 19 23 23 F 1.39898 * 109.47022 * 239.97434 * 21 20 19 24 24 C 1.38210 * 120.00088 * 89.99572 * 16 15 14 25 25 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 27 27 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 28 28 H 1.08996 * 109.47522 * 295.00055 * 4 2 1 29 29 H 1.08999 * 109.46971 * 55.00363 * 4 2 1 30 30 H 1.09001 * 109.47545 * 300.00250 * 5 4 2 31 31 H 1.09005 * 109.47263 * 59.99672 * 5 4 2 32 32 H 0.97005 * 119.99854 * 180.02562 * 9 8 6 33 33 H 1.00908 * 110.99583 * 38.95067 * 14 2 1 34 34 H 1.09002 * 109.47043 * 299.99792 * 15 14 2 35 35 H 1.09001 * 109.47354 * 59.99854 * 15 14 2 36 36 H 1.07994 * 120.00494 * 0.02562 * 17 16 15 37 37 H 1.08002 * 120.00019 * 180.27435 * 18 17 16 38 38 H 1.08003 * 120.00311 * 179.82671 * 19 18 17 39 39 H 1.08996 * 109.47425 * 359.97438 * 21 20 19 40 40 H 1.08002 * 120.00083 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 6 4.0671 -1.3233 -2.5444 7 1 3.3685 -1.8031 -3.2139 8 6 5.4184 -1.3603 -2.8157 9 7 5.8566 -1.9794 -3.8900 10 14 6.6265 -0.5298 -1.6581 11 1 7.0612 -1.4974 -0.6188 12 1 7.8088 -0.0646 -2.4269 13 1 5.9699 0.6329 -1.0082 14 7 2.0197 -0.6925 1.1995 15 6 2.0824 0.2226 2.3469 16 6 2.5873 -0.5218 3.5561 17 6 1.6937 -1.1472 4.4057 18 6 2.1572 -1.8337 5.5122 19 6 3.5135 -1.8872 5.7745 20 6 4.4064 -1.2574 4.9280 21 6 5.8849 -1.3152 5.2143 22 9 6.5439 -1.9263 4.1420 23 9 6.3777 -0.0172 5.3858 24 6 3.9432 -0.5745 3.8187 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.7516 -1.7715 -1.2056 29 1 1.6053 -0.2618 -2.1369 30 1 3.8532 0.4369 -1.3573 31 1 3.9994 -1.0728 -0.4259 32 1 6.8074 -2.0057 -4.0807 33 1 1.4494 -1.4979 1.4101 34 1 2.7588 1.0462 2.1182 35 1 1.0870 0.6163 2.5526 36 1 0.6340 -1.1027 4.2027 37 1 1.4595 -2.3260 6.1735 38 1 3.8754 -2.4212 6.6407 39 1 6.0568 -1.8922 6.1229 40 1 4.6410 -0.0826 3.1572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479508.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:45 Heat of formation + Delta-G solvation = -93.927466 kcal Electronic energy + Delta-G solvation = -21935.083824 eV Core-core repulsion = 18384.537437 eV Total energy + Delta-G solvation = -3550.546388 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.04605 -47.03344 -39.64823 -37.26684 -33.79195 -32.57173 -31.82709 -30.50904 -29.01875 -26.31370 -25.55743 -24.75836 -22.28368 -21.17921 -21.00233 -19.84802 -17.46491 -17.39396 -17.25929 -16.52366 -16.28704 -15.56300 -15.25740 -14.89793 -14.19667 -14.02300 -13.97420 -13.70584 -13.40360 -13.14300 -13.03258 -12.98215 -12.57559 -12.51804 -12.31102 -12.05055 -12.02103 -11.68148 -11.38483 -11.12926 -10.96864 -10.76379 -10.43363 -9.82862 -9.59494 -9.45612 -9.22939 -9.02130 -8.96922 -8.38830 -8.05081 -5.90810 -3.86746 0.92522 1.15806 3.40071 3.44845 3.51109 3.56437 3.57538 4.00276 4.31596 4.47368 4.59990 4.73210 4.77269 4.87487 4.93408 5.13672 5.13923 5.23429 5.38811 5.42209 5.45349 5.55207 5.58341 5.78786 5.81438 5.97957 6.13411 6.15605 6.18192 6.26294 6.40655 6.53315 6.69236 6.73096 7.11880 7.29699 7.55746 7.63988 7.75993 7.97997 8.69311 9.15218 9.73805 11.23059 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.005510 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.804394 B = 5080.633044 C = 6914.274744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.080 3.920 3 H 0.073 0.927 4 C -0.089 4.089 5 C -0.007 4.007 6 C -0.516 4.516 7 H 0.068 0.932 8 C 0.065 3.935 9 N -0.910 5.910 10 Si 0.880 3.120 11 H -0.276 1.276 12 H -0.291 1.291 13 H -0.266 1.266 14 N -0.669 5.669 15 C 0.096 3.904 16 C -0.077 4.077 17 C -0.094 4.094 18 C -0.125 4.125 19 C -0.090 4.090 20 C -0.172 4.172 21 C 0.313 3.687 22 F -0.195 7.195 23 F -0.201 7.201 24 C -0.055 4.055 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.006 0.994 31 H 0.027 0.973 32 H 0.260 0.740 33 H 0.338 0.662 34 H 0.081 0.919 35 H 0.037 0.963 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 2.630 22.966 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.029 4.029 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.044 4.044 6 C -0.554 4.554 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.708 3.292 11 H -0.202 1.202 12 H -0.218 1.218 13 H -0.191 1.191 14 N -0.300 5.300 15 C -0.033 4.033 16 C -0.077 4.077 17 C -0.113 4.113 18 C -0.143 4.143 19 C -0.108 4.108 20 C -0.173 4.173 21 C 0.259 3.741 22 F -0.176 7.176 23 F -0.183 7.183 24 C -0.073 4.073 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.025 0.975 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.157 0.843 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.133 0.867 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.629 2.701 22.663 24.065 hybrid contribution -0.117 0.451 0.617 0.774 sum -7.746 3.153 23.280 24.737 Atomic orbital electron populations 1.22518 0.98218 1.01750 1.01424 1.21805 0.91357 0.98353 0.91367 0.90893 1.21448 0.99015 0.99033 0.93247 1.19473 0.91456 0.96158 0.97323 1.21251 0.92801 1.33922 1.07475 0.91427 1.25012 0.98439 0.95038 0.95064 1.69933 1.14395 1.44104 1.26542 0.86771 0.80575 0.80713 0.81169 1.20197 1.21783 1.19060 1.60593 1.58024 1.08907 1.02482 1.20934 0.99222 0.94988 0.88131 1.19867 0.93082 0.98608 0.96156 1.21194 0.99628 0.96203 0.94240 1.21047 0.95156 1.00029 0.98027 1.20876 0.93279 0.98126 0.98532 1.20352 0.94134 1.03863 0.98924 1.20391 0.86628 0.78107 0.88987 1.93070 1.82447 1.82753 1.59357 1.93011 1.89078 1.40366 1.95814 1.20940 0.95725 0.95901 0.94756 0.92604 0.93697 0.92005 0.92867 0.92799 0.97543 0.95494 0.92986 0.84340 0.90063 0.94536 0.85804 0.85463 0.85514 0.86708 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.16 37.15 0.34 -1.88 16 2 C 0.08 1.25 2.59 -67.72 -0.18 1.07 16 3 H 0.07 1.16 7.80 -51.93 -0.40 0.75 16 4 C -0.09 -1.78 4.83 -26.73 -0.13 -1.91 16 5 C -0.01 -0.17 3.93 -27.89 -0.11 -0.28 16 6 C -0.52 -15.36 9.66 -34.44 -0.33 -15.69 16 7 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 8 C 0.06 1.97 5.47 -17.82 -0.10 1.88 16 9 N -0.91 -29.24 13.96 55.43 0.77 -28.46 16 10 Si 0.88 23.21 27.47 -169.99 -4.67 18.54 16 11 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 13 H -0.27 -6.76 6.54 56.52 0.37 -6.39 16 14 N -0.67 -9.97 5.69 -107.99 -0.61 -10.59 16 15 C 0.10 1.20 5.61 -4.98 -0.03 1.17 16 16 C -0.08 -0.93 5.39 -104.62 -0.56 -1.50 16 17 C -0.09 -0.93 9.70 -39.58 -0.38 -1.32 16 18 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 19 C -0.09 -0.82 9.67 -39.59 -0.38 -1.21 16 20 C -0.17 -2.00 5.37 -104.62 -0.56 -2.56 16 21 C 0.31 3.45 5.45 36.01 0.20 3.65 16 22 F -0.20 -2.84 17.26 2.25 0.04 -2.80 16 23 F -0.20 -2.55 17.26 2.25 0.04 -2.52 16 24 C -0.05 -0.73 9.26 -39.59 -0.37 -1.10 16 25 H 0.05 0.67 8.13 -51.93 -0.42 0.24 16 26 H 0.04 0.48 7.45 -51.93 -0.39 0.09 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.01 0.16 7.20 -51.93 -0.37 -0.22 16 31 H 0.03 0.69 7.18 -51.93 -0.37 0.31 16 32 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 33 H 0.34 4.62 8.46 -39.29 -0.33 4.29 16 34 H 0.08 1.08 8.00 -51.93 -0.42 0.66 16 35 H 0.04 0.39 7.38 -51.93 -0.38 0.01 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.13 0.77 7.95 -52.48 -0.42 0.35 16 39 H 0.12 0.78 7.88 -51.93 -0.41 0.37 16 40 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 340.84 15.07 5.14 5.14 Total: -1.00 -33.79 340.84 -8.33 -42.11 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.04 Total: -0.27 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -2.99 Total: -21.16 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.16 Total: -39.05 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.08 Total: -5.31 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.67 Total: 18.54 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.79 -8.33 -42.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479508.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.813 kcal (2) G-P(sol) polarization free energy of solvation -33.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds