Wall clock time and date at job start Tue Mar 31 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46753 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00051 * 2 1 3 5 5 C 1.52997 * 109.46947 * 184.99869 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47216 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 119.99848 * 10 8 6 13 13 H 1.48501 * 109.47057 * 239.99829 * 10 8 6 14 14 N 1.46900 * 109.46845 * 239.99882 * 2 1 3 15 15 C 1.46906 * 111.00040 * 85.00043 * 14 2 1 16 16 C 1.50693 * 109.47092 * 180.02562 * 15 14 2 17 17 C 1.38266 * 119.99985 * 269.72591 * 16 15 14 18 18 C 1.38204 * 120.00074 * 179.79411 * 17 16 15 19 19 C 1.38257 * 120.00250 * 0.43034 * 18 17 16 20 20 C 1.38212 * 119.99768 * 359.82111 * 19 18 17 21 21 C 1.50700 * 119.99963 * 179.97438 * 20 19 18 22 22 F 1.39903 * 109.47159 * 119.97882 * 21 20 19 23 23 F 1.39905 * 109.47119 * 239.97580 * 21 20 19 24 24 C 1.38213 * 120.00466 * 90.00079 * 16 15 14 25 25 H 1.09009 * 109.46555 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.46824 * 299.99940 * 1 2 3 27 27 H 1.08992 * 109.47388 * 60.00185 * 1 2 3 28 28 H 1.09001 * 109.47372 * 65.00179 * 4 2 1 29 29 H 1.09004 * 109.47108 * 304.99923 * 4 2 1 30 30 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 31 31 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 32 32 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 33 33 H 1.00896 * 111.00253 * 208.95278 * 14 2 1 34 34 H 1.09006 * 109.46766 * 299.99489 * 15 14 2 35 35 H 1.08994 * 109.46966 * 59.99635 * 15 14 2 36 36 H 1.08007 * 119.99210 * 359.97438 * 17 16 15 37 37 H 1.07998 * 120.00182 * 180.27678 * 18 17 16 38 38 H 1.08004 * 120.00113 * 179.83833 * 19 18 17 39 39 H 1.09001 * 109.47029 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.99859 * 359.97152 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0673 -1.3232 2.5444 7 1 3.3688 -1.8036 3.2135 8 6 5.4184 -1.3592 2.8162 9 7 6.2689 -0.7736 2.0016 10 14 6.0412 -2.2397 4.3414 11 1 4.8913 -2.8113 5.0872 12 1 6.9638 -3.3320 3.9404 13 1 6.7635 -1.2754 5.2095 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3470 16 6 2.5872 -0.5219 -3.5560 17 6 3.9432 -0.5698 -3.8220 18 6 4.4065 -1.2562 -4.9286 19 6 3.5134 -1.8873 -5.7745 20 6 2.1576 -1.8350 -5.5115 21 6 1.1841 -2.5224 -6.4339 22 9 0.4660 -3.4871 -5.7190 23 9 0.2974 -1.5786 -6.9634 24 6 1.6944 -1.1519 -4.4023 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 1.7518 -1.7715 1.2056 29 1 1.6055 -0.2617 2.1370 30 1 3.8532 0.4370 1.3572 31 1 3.9995 -1.0727 0.4258 32 1 7.2196 -0.7994 2.1927 33 1 2.9173 -1.1205 -1.0288 34 1 1.0870 0.6162 -2.5526 35 1 2.7588 1.0461 -2.1183 36 1 4.6405 -0.0734 -3.1634 37 1 5.4660 -1.2974 -5.1339 38 1 3.8753 -2.4214 -6.6407 39 1 1.7302 -3.0033 -7.2454 40 1 0.6349 -1.1111 -4.1968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:47 Heat of formation + Delta-G solvation = -100.067941 kcal Electronic energy + Delta-G solvation = -21624.109700 eV Core-core repulsion = 18073.297042 eV Total energy + Delta-G solvation = -3550.812659 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.10689 -47.09514 -39.52720 -37.12274 -33.73862 -32.64034 -31.73036 -30.13750 -28.98699 -26.25621 -25.54636 -24.54710 -22.17607 -21.45919 -20.93553 -19.55235 -17.48543 -17.34776 -17.32479 -16.40421 -16.18501 -15.50468 -15.11795 -14.81192 -14.52185 -14.11403 -14.03031 -13.59392 -13.47335 -13.00864 -12.85962 -12.79266 -12.54214 -12.36459 -12.18058 -11.98454 -11.66860 -11.45289 -11.25151 -10.99492 -10.94939 -10.84603 -10.48091 -10.26324 -9.78770 -9.30254 -9.11255 -9.05855 -8.87467 -8.38423 -8.01408 -6.03417 -4.05062 1.04218 1.26414 3.29414 3.37121 3.41671 3.51948 3.56773 3.99230 4.34606 4.44173 4.63307 4.84309 4.88493 4.90592 5.03575 5.28284 5.30722 5.33312 5.46610 5.55002 5.64555 5.79288 5.86329 5.91351 5.94227 6.17007 6.21680 6.30448 6.34347 6.50037 6.52108 6.55054 6.80743 6.89505 7.06059 7.44854 7.59228 7.76810 7.86122 7.96619 8.40118 9.01712 9.59388 11.07902 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.019444 B = 0.003486 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.712878 B = 8031.068413 C = 8688.135498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.039 0.961 4 C -0.115 4.115 5 C 0.020 3.980 6 C -0.518 4.518 7 H 0.056 0.944 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.681 5.681 15 C 0.095 3.905 16 C -0.076 4.076 17 C -0.088 4.088 18 C -0.121 4.121 19 C -0.091 4.091 20 C -0.177 4.177 21 C 0.315 3.685 22 F -0.199 7.199 23 F -0.202 7.202 24 C -0.059 4.059 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.354 0.646 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.507 0.069 -17.746 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 H 0.057 0.943 4 C -0.153 4.153 5 C -0.017 4.017 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 N -0.316 5.316 15 C -0.034 4.034 16 C -0.076 4.076 17 C -0.106 4.106 18 C -0.139 4.139 19 C -0.109 4.109 20 C -0.178 4.178 21 C 0.261 3.739 22 F -0.180 7.180 23 F -0.184 7.184 24 C -0.078 4.078 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.176 0.824 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.133 0.867 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.991 -0.144 -17.909 19.611 hybrid contribution 1.201 0.054 1.083 1.618 sum -6.790 -0.091 -16.826 18.145 Atomic orbital electron populations 1.21796 0.95684 1.01789 1.00193 1.21629 0.94577 0.96106 0.90419 0.94348 1.21832 0.99649 0.99514 0.94262 1.19136 0.88805 0.96839 0.96936 1.21279 0.91975 1.34106 1.08243 0.92601 1.25018 0.97083 0.95605 0.96727 1.69969 1.02300 1.44251 1.37070 0.86546 0.78871 0.79475 0.83192 1.19710 1.21004 1.21062 1.60662 1.34916 1.32066 1.03990 1.20922 1.00406 0.93310 0.88716 1.19889 0.93153 0.98398 0.96169 1.21362 0.95262 0.97382 0.96624 1.21104 0.99801 0.98007 0.95024 1.20869 0.91650 0.98862 0.99558 1.20275 0.94630 1.04127 0.98793 1.20379 0.83160 0.79418 0.90946 1.93029 1.80427 1.64040 1.80531 1.93006 1.71637 1.66632 1.87099 1.20814 1.00182 0.94377 0.92378 0.92322 0.92961 0.93802 0.92418 0.92645 0.96959 0.96696 0.93117 0.82445 0.90542 0.94154 0.85211 0.85291 0.85595 0.86740 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.42 37.16 0.35 -1.65 16 2 C 0.08 1.40 2.65 -67.71 -0.18 1.23 16 3 H 0.04 0.67 7.80 -51.93 -0.41 0.27 16 4 C -0.11 -2.35 4.74 -26.73 -0.13 -2.47 16 5 C 0.02 0.50 4.80 -27.88 -0.13 0.37 16 6 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 7 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 10 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 N -0.68 -11.36 6.30 -107.99 -0.68 -12.04 16 15 C 0.10 1.35 5.61 -4.98 -0.03 1.32 16 16 C -0.08 -1.02 5.39 -104.62 -0.56 -1.58 16 17 C -0.09 -1.12 9.70 -39.58 -0.38 -1.50 16 18 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 19 C -0.09 -0.91 9.67 -39.58 -0.38 -1.29 16 20 C -0.18 -2.02 5.37 -104.62 -0.56 -2.58 16 21 C 0.31 3.11 5.45 36.01 0.20 3.30 16 22 F -0.20 -2.43 17.26 2.25 0.04 -2.39 16 23 F -0.20 -2.29 17.26 2.25 0.04 -2.25 16 24 C -0.06 -0.76 9.25 -39.58 -0.37 -1.13 16 25 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.01 0.39 6.43 -51.93 -0.33 0.05 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.35 6.60 6.46 -39.29 -0.25 6.35 16 34 H 0.08 1.00 7.38 -51.93 -0.38 0.62 16 35 H 0.04 0.58 8.00 -51.93 -0.42 0.16 16 36 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.13 0.86 7.95 -52.48 -0.42 0.44 16 39 H 0.12 0.70 7.88 -51.93 -0.41 0.29 16 40 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 341.91 15.07 5.15 5.15 Total: -1.00 -30.40 341.91 -8.65 -39.05 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.93 Total: 2.73 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -2.99 Total: -21.06 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.06 Total: -37.81 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.08 Total: -4.64 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.40 -8.65 -39.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.017 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds