Wall clock time and date at job start Tue Mar 31 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.53006 * 109.46846 * 185.00166 * 4 2 1 6 6 C 1.50701 * 109.47024 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99939 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99968 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99808 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47109 * 90.00453 * 10 8 6 12 12 H 1.48498 * 109.47260 * 209.99830 * 10 8 6 13 13 H 1.48494 * 109.47293 * 330.00082 * 10 8 6 14 14 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 15 15 C 1.46901 * 110.99913 * 85.00348 * 14 2 1 16 16 H 1.08997 * 109.47020 * 324.99207 * 15 14 2 17 17 C 1.52995 * 109.47559 * 84.99842 * 15 14 2 18 18 C 1.50703 * 109.47125 * 204.99891 * 15 14 2 19 19 C 1.38420 * 120.02167 * 314.71928 * 18 15 14 20 20 F 1.35100 * 120.01689 * 0.02562 * 19 18 15 21 21 C 1.38482 * 119.96977 * 179.74747 * 19 18 15 22 22 C 1.38205 * 120.02436 * 0.52852 * 21 19 18 23 23 C 1.38199 * 120.05257 * 359.74604 * 22 21 19 24 24 C 1.38418 * 120.02875 * 134.99317 * 18 15 14 25 25 F 1.35103 * 120.01309 * 0.02562 * 24 18 15 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47069 * 304.99600 * 4 2 1 30 30 H 1.08991 * 109.47625 * 64.99919 * 4 2 1 31 31 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 32 32 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 33 33 H 0.96998 * 120.00041 * 179.97438 * 9 8 6 34 34 H 1.00902 * 110.99924 * 208.95338 * 14 2 1 35 35 H 1.08997 * 109.47472 * 59.99642 * 17 15 14 36 36 H 1.09001 * 109.47409 * 180.02562 * 17 15 14 37 37 H 1.09007 * 109.46927 * 299.99830 * 17 15 14 38 38 H 1.08000 * 119.98560 * 180.27605 * 21 19 18 39 39 H 1.08004 * 119.96967 * 179.72020 * 22 21 19 40 40 H 1.08005 * 119.98723 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0672 -1.3232 2.5444 7 1 3.3687 -1.8038 3.2135 8 6 5.4185 -1.3601 2.8157 9 7 6.2691 -0.7762 2.0001 10 14 6.0411 -2.2407 4.3409 11 1 6.3208 -3.6618 4.0125 12 1 7.2876 -1.5878 4.8152 13 1 5.0100 -2.1728 5.4073 14 7 2.0196 -0.6925 -1.1994 15 6 2.0824 0.2226 -2.3468 16 1 1.2575 0.9329 -2.2907 17 6 3.4110 0.9809 -2.3224 18 6 1.9785 -0.5675 -3.6259 19 6 2.7194 -1.7256 -3.7866 20 9 3.5358 -2.1485 -2.7967 21 6 2.6192 -2.4537 -4.9603 22 6 1.7880 -2.0186 -5.9752 23 6 1.0522 -0.8594 -5.8180 24 6 1.1464 -0.1328 -4.6430 25 9 0.4273 1.0006 -4.4899 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -0.2618 2.1370 30 1 1.7516 -1.7715 1.2056 31 1 3.9994 -1.0728 0.4259 32 1 3.8532 0.4370 1.3573 33 1 7.2197 -0.8019 2.1912 34 1 2.9172 -1.1205 -1.0287 35 1 4.2359 0.2706 -2.3786 36 1 3.4574 1.6603 -3.1735 37 1 3.4861 1.5525 -1.3973 38 1 3.1938 -3.3598 -5.0842 39 1 1.7140 -2.5847 -6.8920 40 1 0.4033 -0.5201 -6.6120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:38 Heat of formation + Delta-G solvation = -83.937599 kcal Electronic energy + Delta-G solvation = -22706.208221 eV Core-core repulsion = 19156.095027 eV Total energy + Delta-G solvation = -3550.113195 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.05160 -48.81944 -39.10460 -37.45274 -34.16374 -32.63413 -30.35008 -30.12591 -29.27429 -27.74115 -25.11257 -23.86274 -22.88674 -21.51860 -20.74455 -19.57608 -18.11371 -17.21427 -16.45449 -16.11508 -15.90991 -15.56333 -15.20967 -15.09813 -14.68908 -14.48506 -14.37208 -13.93966 -13.07964 -12.84973 -12.77461 -12.57935 -12.46553 -12.20347 -12.02073 -11.94390 -11.68172 -11.51072 -11.22075 -11.16242 -10.89501 -10.65074 -10.46112 -10.27905 -9.74045 -9.25142 -9.03361 -8.89010 -8.77903 -8.33604 -7.99556 -5.98506 -4.00371 0.91026 0.95630 3.29632 3.33371 3.39458 3.42986 3.88452 4.32081 4.38847 4.47665 4.55818 4.75106 4.87788 5.05196 5.29537 5.37779 5.40379 5.56335 5.64420 5.75552 5.77061 5.83097 5.88475 5.91803 6.02043 6.05121 6.09423 6.23647 6.38066 6.40614 6.54256 6.57666 6.72281 6.93242 7.10744 7.48684 7.64524 7.82010 7.92846 8.01756 8.44688 9.06141 9.63647 11.12706 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.022721 B = 0.004347 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.029914 B = 6440.293654 C = 7075.198710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.083 3.917 3 H 0.040 0.960 4 C -0.114 4.114 5 C 0.021 3.979 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.682 5.682 15 C 0.122 3.878 16 H 0.090 0.910 17 C -0.178 4.178 18 C -0.131 4.131 19 C 0.151 3.849 20 F -0.117 7.117 21 C -0.168 4.168 22 C -0.071 4.071 23 C -0.169 4.169 24 C 0.128 3.872 25 F -0.133 7.133 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.016 0.984 32 H 0.012 0.988 33 H 0.260 0.740 34 H 0.360 0.640 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.832 0.552 -16.907 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 H 0.058 0.942 4 C -0.152 4.152 5 C -0.016 4.016 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.318 5.318 15 C 0.011 3.989 16 H 0.108 0.892 17 C -0.237 4.237 18 C -0.134 4.134 19 C 0.131 3.869 20 F -0.095 7.095 21 C -0.187 4.187 22 C -0.089 4.089 23 C -0.188 4.188 24 C 0.108 3.892 25 F -0.111 7.111 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.185 0.815 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.240 0.359 -17.013 19.861 hybrid contribution 1.265 0.181 1.211 1.760 sum -8.976 0.540 -15.802 18.181 Atomic orbital electron populations 1.21808 0.95762 1.01726 1.00162 1.21611 0.94428 0.96273 0.90325 0.94181 1.21830 0.99746 0.99461 0.94197 1.19127 0.88717 0.96825 0.96948 1.21235 0.91949 1.34221 1.08286 0.92700 1.25012 0.97076 0.95604 0.96678 1.69959 1.02315 1.44151 1.37029 0.86611 0.78278 0.79801 0.83421 1.20660 1.21294 1.19906 1.60746 1.35728 1.31395 1.03948 1.20320 0.98275 0.92539 0.87757 0.89186 1.22472 0.97527 1.01123 1.02570 1.19997 0.98770 0.97282 0.97307 1.17202 0.90839 0.93002 0.85871 1.91556 1.69350 1.89008 1.59591 1.21235 1.02606 1.01810 0.93038 1.20758 0.94467 0.95083 0.98570 1.21101 1.03518 0.97032 0.97171 1.17174 0.93053 0.84454 0.94518 1.91497 1.75711 1.47989 1.95898 0.92943 0.93847 0.92398 0.92651 0.92469 0.96608 0.96972 0.93075 0.81510 0.91661 0.92479 0.91207 0.84160 0.84280 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.40 37.16 0.35 -1.74 16 2 C 0.08 1.48 2.46 -67.72 -0.17 1.31 16 3 H 0.04 0.73 7.11 -51.93 -0.37 0.36 16 4 C -0.11 -2.41 4.74 -26.73 -0.13 -2.53 16 5 C 0.02 0.54 4.80 -27.88 -0.13 0.41 16 6 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 7 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 10 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 N -0.68 -12.03 5.49 -100.96 -0.55 -12.58 16 15 C 0.12 1.88 2.40 -68.87 -0.17 1.72 16 16 H 0.09 1.36 6.24 -51.93 -0.32 1.04 16 17 C -0.18 -2.76 9.08 37.16 0.34 -2.43 16 18 C -0.13 -1.85 4.96 -104.49 -0.52 -2.37 16 19 C 0.15 2.12 6.98 -39.42 -0.28 1.84 16 20 F -0.12 -1.95 14.31 2.25 0.03 -1.91 16 21 C -0.17 -1.81 10.03 -39.50 -0.40 -2.21 16 22 C -0.07 -0.62 10.04 -39.61 -0.40 -1.02 16 23 C -0.17 -1.64 10.02 -39.51 -0.40 -2.04 16 24 C 0.13 1.59 7.24 -39.43 -0.29 1.30 16 25 F -0.13 -1.70 16.27 2.25 0.04 -1.67 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.62 7.43 -51.93 -0.39 0.23 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.02 0.43 6.43 -51.93 -0.33 0.09 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.36 7.15 4.45 -39.29 -0.17 6.97 16 35 H 0.06 1.09 7.60 -51.93 -0.39 0.69 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.15 7.43 -51.93 -0.39 0.76 16 38 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 40 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 332.69 15.07 5.01 5.01 Total: -1.00 -30.30 332.69 -8.06 -38.36 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.71 Total: 3.46 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -2.59 Total: -21.32 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.18 Total: -38.79 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.07 Total: -3.58 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.30 -8.06 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.578 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds