Wall clock time and date at job start Tue Mar 31 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 C 1.50703 * 109.46912 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00001 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00114 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99955 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46828 * 90.00636 * 10 8 6 12 12 H 1.48494 * 109.47178 * 210.00332 * 10 8 6 13 13 H 1.48500 * 109.47075 * 330.00579 * 10 8 6 14 14 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 15 15 C 1.46897 * 111.00568 * 275.00494 * 14 2 1 16 16 H 1.08997 * 109.46845 * 34.99452 * 15 14 2 17 17 C 1.53002 * 109.46652 * 275.00037 * 15 14 2 18 18 C 1.50699 * 109.47272 * 154.99990 * 15 14 2 19 19 C 1.38255 * 119.96405 * 39.72612 * 18 15 14 20 20 C 1.38213 * 120.06854 * 179.72514 * 19 18 15 21 21 C 1.38406 * 119.99797 * 0.54802 * 20 19 18 22 22 F 1.35103 * 120.03316 * 179.74652 * 21 20 19 23 23 C 1.38645 * 119.93327 * 359.72810 * 21 20 19 24 24 F 1.35097 * 120.03760 * 180.02562 * 23 21 20 25 25 C 1.38208 * 119.96198 * 219.99774 * 18 15 14 26 26 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 28 28 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 29 29 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 30 30 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 31 31 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 32 32 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 33 33 H 0.97000 * 120.00354 * 180.02562 * 9 8 6 34 34 H 1.00901 * 110.99651 * 38.96127 * 14 2 1 35 35 H 1.09007 * 109.46960 * 179.97438 * 17 15 14 36 36 H 1.08995 * 109.47506 * 299.99144 * 17 15 14 37 37 H 1.09004 * 109.47376 * 60.00655 * 17 15 14 38 38 H 1.08001 * 119.96437 * 0.02562 * 19 18 15 39 39 H 1.08001 * 119.99916 * 180.27890 * 20 19 18 40 40 H 1.08001 * 120.00240 * 0.02914 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 6 4.0673 -1.3241 -2.5437 7 1 3.3688 -1.8045 -3.2129 8 6 5.4185 -1.3604 -2.8154 9 7 6.2690 -0.7750 -2.0009 10 14 6.0413 -2.2422 -4.3399 11 1 6.0907 -1.2891 -5.4776 12 1 7.4029 -2.7757 -4.0816 13 1 5.1254 -3.3629 -4.6724 14 7 2.0196 -0.6924 1.1995 15 6 2.0824 0.2226 2.3470 16 1 1.2575 0.9330 2.2907 17 6 3.4110 0.9810 2.3224 18 6 1.9785 -0.5676 3.6260 19 6 2.6286 -1.7822 3.7419 20 6 2.5395 -2.5061 4.9159 21 6 1.7896 -2.0205 5.9730 22 9 1.6979 -2.7299 7.1191 23 6 1.1330 -0.8051 5.8548 24 9 0.4009 -0.3289 6.8855 25 6 1.2289 -0.0799 4.6797 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -0.2617 -2.1370 30 1 1.7517 -1.7715 -1.2055 31 1 3.8532 0.4371 -1.3573 32 1 3.9994 -1.0726 -0.4259 33 1 7.2196 -0.8001 -2.1922 34 1 1.4495 -1.4979 1.4101 35 1 3.4574 1.6603 3.1736 36 1 4.2359 0.2707 2.3787 37 1 3.4861 1.5526 1.3973 38 1 3.2106 -2.1635 2.9159 39 1 3.0515 -3.4527 5.0068 40 1 0.7176 0.8668 4.5862 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485697.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:40 Heat of formation + Delta-G solvation = -85.334353 kcal Electronic energy + Delta-G solvation = -21923.706716 eV Core-core repulsion = 18373.532954 eV Total energy + Delta-G solvation = -3550.173763 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.60318 -48.68118 -39.66361 -37.25850 -33.97739 -32.59210 -31.07923 -29.89842 -29.07592 -27.89723 -25.11479 -23.68427 -23.41073 -21.50905 -20.52967 -19.81765 -18.06980 -17.29398 -17.06220 -16.44655 -16.13636 -15.38868 -15.22904 -15.10237 -14.61315 -14.41980 -14.33851 -14.10957 -13.42101 -13.08567 -12.89065 -12.82624 -12.44665 -12.37465 -12.05818 -11.78092 -11.59194 -11.47659 -11.27572 -11.22566 -10.90422 -10.73159 -10.45516 -10.23192 -9.65001 -9.25860 -9.23076 -8.92734 -8.75296 -8.25653 -8.00069 -5.90463 -3.91331 0.74480 0.83309 3.19686 3.35707 3.42259 3.45388 3.60790 4.07218 4.30439 4.50008 4.52676 4.54020 4.88802 4.99176 5.20209 5.33996 5.45332 5.46541 5.51017 5.56595 5.63797 5.64515 5.73479 5.90668 5.98708 6.06327 6.13868 6.23122 6.27850 6.36985 6.57369 6.61581 6.66036 6.85943 7.27410 7.42300 7.70854 7.83187 8.05834 8.20600 8.56035 9.17564 9.71495 11.20423 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.023049 B = 0.003490 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.486207 B = 8021.563810 C = 8610.177156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.074 0.926 4 C -0.098 4.098 5 C 0.031 3.969 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.664 5.664 15 C 0.125 3.875 16 H 0.051 0.949 17 C -0.136 4.136 18 C -0.063 4.063 19 C -0.078 4.078 20 C -0.125 4.125 21 C 0.060 3.940 22 F -0.133 7.133 23 C 0.062 3.938 24 F -0.133 7.133 25 C -0.123 4.123 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.007 0.993 32 H 0.033 0.967 33 H 0.258 0.742 34 H 0.337 0.663 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.639 1.080 14.440 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.026 4.026 3 H 0.092 0.908 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.295 5.295 15 C 0.015 3.985 16 H 0.069 0.931 17 C -0.194 4.194 18 C -0.064 4.064 19 C -0.096 4.096 20 C -0.144 4.144 21 C 0.040 3.960 22 F -0.112 7.112 23 C 0.042 3.958 24 F -0.111 7.111 25 C -0.142 4.142 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.156 0.844 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.174 0.826 39 H 0.164 0.836 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.816 1.186 14.381 17.452 hybrid contribution -0.708 -0.412 -0.179 0.838 sum -10.524 0.774 14.202 17.693 Atomic orbital electron populations 1.22546 0.98575 1.01608 1.01291 1.21789 0.90878 0.98525 0.91367 0.90754 1.21626 1.00675 0.98369 0.92932 1.18988 0.88186 0.96453 0.97000 1.21355 0.91827 1.34031 1.08518 0.93174 1.24977 0.97143 0.95772 0.96433 1.69966 1.02159 1.44441 1.36849 0.86706 0.78141 0.80024 0.83753 1.20879 1.21346 1.20028 1.60710 1.57780 1.08660 1.02380 1.20469 0.98585 0.93081 0.86325 0.93117 1.21808 0.96254 0.99813 1.01515 1.20021 0.95587 0.95201 0.95584 1.21226 0.97688 0.93363 0.97305 1.21184 0.99294 1.01826 0.92073 1.17741 1.02545 0.91177 0.84576 1.91515 1.94928 1.77387 1.47332 1.17609 0.97486 0.93845 0.86825 1.91513 1.74926 1.87922 1.56778 1.20959 1.01087 1.00861 0.91337 0.92754 0.93777 0.92176 0.93525 0.93463 0.97511 0.94852 0.93265 0.84420 0.93145 0.91164 0.91494 0.82635 0.83575 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 9.15 37.15 0.34 -1.91 16 2 C 0.08 1.27 2.40 -67.71 -0.16 1.11 16 3 H 0.07 1.18 7.11 -51.92 -0.37 0.81 16 4 C -0.10 -1.90 4.83 -26.73 -0.13 -2.03 16 5 C 0.03 0.77 4.86 -27.88 -0.14 0.63 16 6 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 7 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 10 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 14 N -0.66 -9.31 4.89 -100.96 -0.49 -9.80 16 15 C 0.13 1.50 2.63 -68.87 -0.18 1.32 16 16 H 0.05 0.57 6.97 -51.93 -0.36 0.21 16 17 C -0.14 -1.80 9.38 37.16 0.35 -1.45 16 18 C -0.06 -0.69 4.72 -104.63 -0.49 -1.19 16 19 C -0.08 -0.85 9.00 -39.58 -0.36 -1.20 16 20 C -0.12 -1.29 10.02 -39.53 -0.40 -1.69 16 21 C 0.06 0.69 7.31 -39.37 -0.29 0.41 16 22 F -0.13 -1.66 17.18 2.25 0.04 -1.62 16 23 C 0.06 0.72 7.31 -39.37 -0.29 0.44 16 24 F -0.13 -1.64 17.18 2.25 0.04 -1.61 16 25 C -0.12 -1.28 9.65 -39.53 -0.38 -1.66 16 26 H 0.05 0.65 8.13 -51.92 -0.42 0.23 16 27 H 0.04 0.49 7.43 -51.93 -0.39 0.10 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.03 0.88 7.75 -51.93 -0.40 0.48 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.34 4.34 7.72 -39.29 -0.30 4.04 16 35 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.99 7.43 -51.93 -0.39 0.60 16 38 H 0.16 1.78 7.71 -52.49 -0.40 1.38 16 39 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.14 1.24 8.04 -52.49 -0.42 0.81 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -29.69 340.45 -8.06 -37.75 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.96 Total: 0.01 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -2.53 Total: -20.55 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.24 Total: -35.72 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.08 Total: -3.22 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.69 -8.06 -37.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485697.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.581 kcal (2) G-P(sol) polarization free energy of solvation -29.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds