Wall clock time and date at job start Tue Mar 31 2020 06:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47139 * 2 1 4 4 C 1.53008 * 109.46834 * 119.99535 * 2 1 3 5 5 C 1.53001 * 109.47031 * 184.99692 * 4 2 1 6 6 C 1.50703 * 109.47072 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00026 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99657 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00528 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99865 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46931 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47156 * 120.00165 * 10 8 6 13 13 H 1.48494 * 109.47305 * 240.00450 * 10 8 6 14 14 N 1.46898 * 109.47069 * 239.99402 * 2 1 3 15 15 C 1.46901 * 110.99796 * 85.00383 * 14 2 1 16 16 C 1.52998 * 109.47256 * 179.97438 * 15 14 2 17 17 C 1.50698 * 109.47317 * 179.97438 * 16 15 14 18 18 C 1.38224 * 119.99194 * 264.98212 * 17 16 15 19 19 C 1.38186 * 120.05276 * 179.97438 * 18 17 16 20 20 C 1.38492 * 120.02401 * 359.97438 * 19 18 17 21 21 F 1.35107 * 120.01136 * 180.02562 * 20 19 18 22 22 C 1.38396 * 119.97620 * 359.79120 * 20 19 18 23 23 C 1.38445 * 119.94704 * 0.43906 * 22 20 19 24 24 F 1.35104 * 120.01039 * 179.81237 * 23 22 20 25 25 H 1.09003 * 109.47339 * 300.00596 * 1 2 3 26 26 H 1.09001 * 109.46897 * 60.00484 * 1 2 3 27 27 H 1.09001 * 109.47139 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47283 * 305.00003 * 4 2 1 29 29 H 1.08999 * 109.46810 * 65.00571 * 4 2 1 30 30 H 1.08998 * 109.47341 * 300.00276 * 5 4 2 31 31 H 1.09007 * 109.46740 * 60.00434 * 5 4 2 32 32 H 0.97002 * 120.00051 * 179.97438 * 9 8 6 33 33 H 1.00895 * 111.00391 * 321.04401 * 14 2 1 34 34 H 1.09007 * 109.47203 * 60.00009 * 15 14 2 35 35 H 1.08999 * 109.46973 * 299.99869 * 15 14 2 36 36 H 1.09001 * 109.46662 * 59.99635 * 16 15 14 37 37 H 1.08999 * 109.47347 * 300.00037 * 16 15 14 38 38 H 1.08000 * 119.97482 * 0.02562 * 18 17 16 39 39 H 1.07999 * 119.98603 * 180.02562 * 19 18 17 40 40 H 1.07999 * 120.03048 * 180.25272 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.6133 1.3138 6 6 4.0670 -1.3231 2.5447 7 1 3.3686 -1.8035 3.2138 8 6 5.4183 -1.3601 2.8160 9 7 6.2690 -0.7755 2.0009 10 14 6.0410 -2.2405 4.3413 11 1 4.8908 -2.8109 5.0878 12 1 6.9626 -3.3336 3.9404 13 1 6.7642 -1.2764 5.2088 14 7 2.0197 -0.6926 -1.1993 15 6 2.0825 0.2224 -2.3468 16 6 2.5963 -0.5331 -3.5741 17 6 2.6601 0.4054 -4.7514 18 6 1.6053 0.4690 -5.6424 19 6 1.6623 1.3296 -6.7221 20 6 2.7765 2.1298 -6.9123 21 9 2.8318 2.9714 -7.9678 22 6 3.8312 2.0705 -6.0183 23 6 3.7750 1.2045 -4.9396 24 9 4.8056 1.1429 -4.0681 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6053 -0.2616 2.1371 29 1 1.7516 -1.7715 1.2057 30 1 3.9994 -1.0729 0.4262 31 1 3.8532 0.4370 1.3575 32 1 7.2196 -0.8013 2.1920 33 1 1.4496 -1.4980 -1.4099 34 1 2.7590 1.0461 -2.1182 35 1 1.0871 0.6161 -2.5525 36 1 1.9202 -1.3569 -3.8028 37 1 3.5917 -0.9265 -3.3682 38 1 0.7355 -0.1537 -5.4941 39 1 0.8373 1.3787 -7.4173 40 1 4.6988 2.6971 -6.1635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:02 Heat of formation + Delta-G solvation = -89.578805 kcal Electronic energy + Delta-G solvation = -21457.271636 eV Core-core repulsion = 17906.913820 eV Total energy + Delta-G solvation = -3550.357816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.25363 -49.03519 -39.29254 -37.31333 -34.14340 -32.79624 -31.16935 -30.74263 -29.07443 -27.04172 -25.02113 -23.45988 -23.08825 -21.35430 -21.26392 -19.70639 -18.38652 -17.44556 -16.28256 -16.14732 -16.05854 -15.75952 -15.43215 -15.15927 -14.77338 -14.59456 -14.39308 -14.18519 -13.87726 -13.17223 -12.85695 -12.61929 -12.49512 -12.32796 -12.19121 -11.88447 -11.65823 -11.54728 -11.22848 -11.09609 -10.95601 -10.81218 -10.39947 -10.17045 -9.60730 -9.32938 -9.18183 -8.87640 -8.78100 -8.20562 -7.87857 -5.85028 -3.86294 0.68643 0.74254 3.08194 3.38301 3.45486 3.49471 3.64282 4.18841 4.24749 4.32172 4.54293 4.56748 4.82068 4.85771 5.15563 5.27136 5.37796 5.50188 5.51001 5.53951 5.57596 5.57945 5.68666 5.71239 5.76486 5.87535 6.07546 6.12796 6.24076 6.28289 6.42807 6.52945 6.69715 6.91265 7.33412 7.50257 7.81623 7.88701 8.11631 8.27206 8.61071 9.23113 9.76213 11.25924 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.022175 B = 0.003223 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.398729 B = 8685.851374 C = 9659.891160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.071 0.929 4 C -0.098 4.098 5 C 0.029 3.971 6 C -0.517 4.517 7 H 0.051 0.949 8 C 0.055 3.945 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.670 5.670 15 C 0.068 3.932 16 C -0.081 4.081 17 C -0.118 4.118 18 C -0.061 4.061 19 C -0.165 4.165 20 C 0.120 3.880 21 F -0.135 7.135 22 C -0.192 4.192 23 C 0.137 3.863 24 F -0.119 7.119 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.006 0.994 32 H 0.257 0.743 33 H 0.334 0.666 34 H 0.072 0.928 35 H 0.024 0.976 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.453 4.201 -18.808 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.025 4.025 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.008 4.008 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.301 5.301 15 C -0.062 4.062 16 C -0.118 4.118 17 C -0.120 4.120 18 C -0.079 4.079 19 C -0.183 4.183 20 C 0.101 3.899 21 F -0.113 7.113 22 C -0.211 4.211 23 C 0.118 3.882 24 F -0.097 7.097 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.091 0.909 35 H 0.042 0.958 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.552 4.349 -18.659 21.873 hybrid contribution -0.253 -0.111 0.531 0.598 sum -10.805 4.238 -18.128 21.525 Atomic orbital electron populations 1.22535 0.98626 1.01501 1.01237 1.21738 0.90874 0.98396 0.91541 0.91057 1.21629 1.00645 0.98337 0.92984 1.19004 0.88280 0.96500 0.97046 1.21384 0.91840 1.33952 1.08424 0.93088 1.25007 0.97169 0.95827 0.96492 1.69995 1.02089 1.44428 1.36844 0.86634 0.78807 0.79535 0.83574 1.19908 1.21137 1.21207 1.60472 1.57702 1.08970 1.02907 1.21885 0.98685 0.95879 0.89718 1.20566 1.04431 0.96114 0.90728 1.20096 0.93496 0.99342 0.99064 1.20810 0.97677 0.97127 0.92279 1.21171 0.98204 0.98363 1.00608 1.17291 0.95271 0.91588 0.85760 1.91525 1.96632 1.68949 1.54226 1.21066 1.01054 1.03102 0.95917 1.17238 0.85633 0.96741 0.88606 1.91614 1.56134 1.94914 1.67072 0.92255 0.93799 0.92769 0.93555 0.93477 0.94883 0.97527 0.93316 0.84811 0.90908 0.95796 0.90435 0.88973 0.83998 0.84166 0.83436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 9.16 37.16 0.34 -2.04 16 2 C 0.08 1.41 2.59 -67.71 -0.18 1.23 16 3 H 0.07 1.27 7.80 -51.93 -0.40 0.86 16 4 C -0.10 -2.03 4.83 -26.73 -0.13 -2.16 16 5 C 0.03 0.77 4.86 -27.88 -0.14 0.63 16 6 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 7 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -27.76 13.29 55.43 0.74 -27.02 16 10 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 14 N -0.67 -10.52 5.70 -106.72 -0.61 -11.13 16 15 C 0.07 0.91 5.47 -3.82 -0.02 0.89 16 16 C -0.08 -0.93 5.38 -27.89 -0.15 -1.08 16 17 C -0.12 -1.26 5.14 -104.55 -0.54 -1.80 16 18 C -0.06 -0.50 9.67 -39.61 -0.38 -0.89 16 19 C -0.16 -1.34 10.02 -39.51 -0.40 -1.74 16 20 C 0.12 1.17 7.30 -39.43 -0.29 0.88 16 21 F -0.13 -1.36 17.27 2.25 0.04 -1.32 16 22 C -0.19 -2.00 10.01 -39.45 -0.39 -2.39 16 23 C 0.14 1.64 7.24 -39.43 -0.29 1.36 16 24 F -0.12 -1.73 16.57 2.25 0.04 -1.69 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 27 H 0.05 0.68 8.13 -51.93 -0.42 0.25 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.33 4.59 8.47 -39.29 -0.33 4.25 16 34 H 0.07 1.13 8.06 -51.92 -0.42 0.71 16 35 H 0.02 0.28 7.44 -51.93 -0.39 -0.10 16 36 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 37 H 0.09 1.26 7.79 -51.93 -0.40 0.86 16 38 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -31.82 343.65 -8.68 -40.50 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.08 Total: -0.75 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.97 Total: -21.00 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.13 Total: -38.15 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.08 Total: -3.01 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.82 -8.68 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.078 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds