Wall clock time and date at job start Tue Mar 31 2020 06:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47139 * 2 1 4 4 C 1.53008 * 109.46834 * 119.99535 * 2 1 3 5 5 C 1.53001 * 109.47031 * 184.99692 * 4 2 1 6 6 C 1.50703 * 109.47072 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00026 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99657 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00528 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99865 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46931 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47156 * 120.00165 * 10 8 6 13 13 H 1.48494 * 109.47305 * 240.00450 * 10 8 6 14 14 N 1.46898 * 109.47069 * 239.99402 * 2 1 3 15 15 C 1.46901 * 110.99796 * 85.00383 * 14 2 1 16 16 C 1.52998 * 109.47256 * 179.97438 * 15 14 2 17 17 C 1.50698 * 109.47317 * 179.97438 * 16 15 14 18 18 C 1.38224 * 119.99194 * 264.98212 * 17 16 15 19 19 C 1.38186 * 120.05276 * 179.97438 * 18 17 16 20 20 C 1.38492 * 120.02401 * 359.97438 * 19 18 17 21 21 F 1.35107 * 120.01136 * 180.02562 * 20 19 18 22 22 C 1.38396 * 119.97620 * 359.79120 * 20 19 18 23 23 C 1.38445 * 119.94704 * 0.43906 * 22 20 19 24 24 F 1.35104 * 120.01039 * 179.81237 * 23 22 20 25 25 H 1.09003 * 109.47339 * 300.00596 * 1 2 3 26 26 H 1.09001 * 109.46897 * 60.00484 * 1 2 3 27 27 H 1.09001 * 109.47139 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47283 * 305.00003 * 4 2 1 29 29 H 1.08999 * 109.46810 * 65.00571 * 4 2 1 30 30 H 1.08998 * 109.47341 * 300.00276 * 5 4 2 31 31 H 1.09007 * 109.46740 * 60.00434 * 5 4 2 32 32 H 0.97002 * 120.00051 * 179.97438 * 9 8 6 33 33 H 1.00895 * 111.00391 * 321.04401 * 14 2 1 34 34 H 1.09007 * 109.47203 * 60.00009 * 15 14 2 35 35 H 1.08999 * 109.46973 * 299.99869 * 15 14 2 36 36 H 1.09001 * 109.46662 * 59.99635 * 16 15 14 37 37 H 1.08999 * 109.47347 * 300.00037 * 16 15 14 38 38 H 1.08000 * 119.97482 * 0.02562 * 18 17 16 39 39 H 1.07999 * 119.98603 * 180.02562 * 19 18 17 40 40 H 1.07999 * 120.03048 * 180.25272 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.6133 1.3138 6 6 4.0670 -1.3231 2.5447 7 1 3.3686 -1.8035 3.2138 8 6 5.4183 -1.3601 2.8160 9 7 6.2690 -0.7755 2.0009 10 14 6.0410 -2.2405 4.3413 11 1 4.8908 -2.8109 5.0878 12 1 6.9626 -3.3336 3.9404 13 1 6.7642 -1.2764 5.2088 14 7 2.0197 -0.6926 -1.1993 15 6 2.0825 0.2224 -2.3468 16 6 2.5963 -0.5331 -3.5741 17 6 2.6601 0.4054 -4.7514 18 6 1.6053 0.4690 -5.6424 19 6 1.6623 1.3296 -6.7221 20 6 2.7765 2.1298 -6.9123 21 9 2.8318 2.9714 -7.9678 22 6 3.8312 2.0705 -6.0183 23 6 3.7750 1.2045 -4.9396 24 9 4.8056 1.1429 -4.0681 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6053 -0.2616 2.1371 29 1 1.7516 -1.7715 1.2057 30 1 3.9994 -1.0729 0.4262 31 1 3.8532 0.4370 1.3575 32 1 7.2196 -0.8013 2.1920 33 1 1.4496 -1.4980 -1.4099 34 1 2.7590 1.0461 -2.1182 35 1 1.0871 0.6161 -2.5525 36 1 1.9202 -1.3569 -3.8028 37 1 3.5917 -0.9265 -3.3682 38 1 0.7355 -0.1537 -5.4941 39 1 0.8373 1.3787 -7.4173 40 1 4.6988 2.6971 -6.1635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172486118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:02 Heat of formation + Delta-G solvation = -107.811767 kcal Electronic energy + Delta-G solvation = -21458.062276 eV Core-core repulsion = 17906.913820 eV Total energy + Delta-G solvation = -3551.148456 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.04732 -50.01897 -40.08878 -38.60059 -35.64331 -34.53542 -32.37334 -31.77960 -30.55786 -28.02007 -26.96048 -24.25177 -24.11502 -23.07391 -22.27503 -21.24654 -19.21241 -18.36187 -18.28193 -17.18226 -16.94289 -16.73281 -16.54027 -16.34575 -16.15734 -16.00759 -15.46066 -15.22880 -14.77128 -14.53384 -14.31550 -14.00160 -13.70907 -13.56094 -13.38095 -13.10970 -12.93721 -12.85767 -12.60207 -12.49073 -12.32532 -12.23619 -11.98137 -11.69805 -11.52020 -11.20117 -10.94450 -10.49020 -10.08596 -9.62072 -9.09900 -8.13019 -6.24073 -0.09769 -0.00428 1.39798 1.40645 1.53797 2.32669 2.44000 2.85666 3.18811 3.21729 3.42346 3.58548 3.80433 3.92444 4.04275 4.10837 4.24123 4.26070 4.42897 4.49670 4.60170 4.73099 4.80353 4.81980 4.91319 4.97260 5.00246 5.04733 5.09516 5.10742 5.18958 5.31147 5.34127 5.48952 5.60163 5.76526 5.89274 6.03801 6.27395 6.35012 6.71781 6.96679 7.44306 8.98407 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.022175 B = 0.003223 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.398729 B = 8685.851374 C = 9659.891160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 H 0.052 0.948 4 C -0.088 4.088 5 C 0.037 3.963 6 C -0.541 4.541 7 H 0.057 0.943 8 C -0.005 4.005 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.261 1.261 12 H -0.279 1.279 13 H -0.280 1.280 14 N -0.694 5.694 15 C 0.075 3.925 16 C -0.073 4.073 17 C -0.125 4.125 18 C -0.048 4.048 19 C -0.150 4.150 20 C 0.113 3.887 21 F -0.138 7.138 22 C -0.198 4.198 23 C 0.105 3.895 24 F -0.146 7.146 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.003 0.997 31 H -0.029 1.029 32 H 0.260 0.740 33 H 0.348 0.652 34 H 0.039 0.961 35 H 0.051 0.949 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.178 0.822 39 H 0.173 0.827 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.194 3.190 -19.346 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.020 4.020 3 H 0.070 0.930 4 C -0.126 4.126 5 C 0.000 4.000 6 C -0.579 4.579 7 H 0.075 0.925 8 C -0.202 4.202 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.185 1.185 12 H -0.204 1.204 13 H -0.205 1.205 14 N -0.326 5.326 15 C -0.054 4.054 16 C -0.110 4.110 17 C -0.127 4.127 18 C -0.066 4.066 19 C -0.168 4.168 20 C 0.093 3.907 21 F -0.116 7.116 22 C -0.218 4.218 23 C 0.086 3.914 24 F -0.125 7.125 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.021 0.979 31 H -0.010 1.010 32 H 0.069 0.931 33 H 0.167 0.833 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.126 0.874 37 H 0.078 0.922 38 H 0.196 0.804 39 H 0.190 0.810 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.314 3.336 -19.205 23.606 hybrid contribution 0.613 0.239 0.630 0.911 sum -12.701 3.575 -18.575 22.784 Atomic orbital electron populations 1.22371 0.94941 1.02738 1.02490 1.21502 0.93632 0.96614 0.90254 0.92964 1.21459 0.96274 0.99279 0.95571 1.18837 0.92484 0.93578 0.95079 1.21849 0.92491 1.34211 1.09322 0.92478 1.26003 0.97471 0.96582 1.00096 1.70150 1.02521 1.45783 1.39049 0.85433 0.78430 0.78245 0.79119 1.18465 1.20444 1.20538 1.60308 1.58724 1.10085 1.03451 1.21798 0.99291 0.94803 0.89525 1.20452 1.03227 0.96942 0.90422 1.20136 0.93967 0.99113 0.99435 1.21162 0.97576 0.96846 0.91006 1.21542 0.98054 0.96664 1.00564 1.17459 0.95675 0.92017 0.85528 1.91520 1.96677 1.69147 1.54266 1.21130 1.01814 1.02980 0.95852 1.17597 0.85990 0.98581 0.89263 1.91542 1.57495 1.95293 1.68136 0.91916 0.91648 0.91490 0.93287 0.93035 0.97857 1.01014 0.93104 0.83271 0.94261 0.93088 0.87415 0.92206 0.80437 0.80973 0.83196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 9.16 71.98 0.66 -3.29 16 2 C 0.09 2.98 2.59 44.92 0.12 3.10 16 3 H 0.05 1.91 7.80 -2.39 -0.02 1.90 16 4 C -0.09 -3.68 4.83 30.60 0.15 -3.53 16 5 C 0.04 2.08 4.86 29.85 0.15 2.22 16 6 C -0.54 -32.23 9.11 25.60 0.23 -31.99 16 7 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 8 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 9 N -0.93 -59.87 13.29 21.45 0.28 -59.59 16 10 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 11 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 14 N -0.69 -21.69 5.70 -491.55 -2.80 -24.49 16 15 C 0.07 1.99 5.47 86.30 0.47 2.46 16 16 C -0.07 -1.65 5.38 29.85 0.16 -1.49 16 17 C -0.12 -2.56 5.14 -19.82 -0.10 -2.66 16 18 C -0.05 -0.64 9.67 22.25 0.22 -0.42 16 19 C -0.15 -1.94 10.02 22.32 0.22 -1.71 16 20 C 0.11 2.03 7.30 22.37 0.16 2.19 16 21 F -0.14 -2.59 17.27 44.97 0.78 -1.82 16 22 C -0.20 -4.22 10.01 22.36 0.22 -3.99 16 23 C 0.11 2.62 7.24 22.37 0.16 2.79 16 24 F -0.15 -4.69 16.57 44.97 0.75 -3.94 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.29 7.45 -2.39 -0.02 1.28 16 27 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.00 0.18 7.75 -2.39 -0.02 0.16 16 31 H -0.03 -1.76 8.14 -2.38 -0.02 -1.78 16 32 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 33 H 0.35 9.00 8.47 -89.70 -0.76 8.24 16 34 H 0.04 1.29 8.06 -2.38 -0.02 1.27 16 35 H 0.05 1.08 7.44 -2.39 -0.02 1.07 16 36 H 0.11 1.76 8.05 -2.39 -0.02 1.74 16 37 H 0.06 1.74 7.79 -2.39 -0.02 1.73 16 38 H 0.18 1.11 8.06 -2.91 -0.02 1.08 16 39 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 40 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -72.42 343.65 4.58 -67.84 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.27 Total: 10.06 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 3.28 Total: -36.14 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -2.52 Total: -84.08 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 1.52 Total: -5.76 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -72.42 4.58 -67.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.975 kcal (2) G-P(sol) polarization free energy of solvation -72.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds