Wall clock time and date at job start Tue Mar 31 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.46975 * 175.00015 * 4 2 1 6 6 C 1.50703 * 109.47069 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99426 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00286 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00199 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99876 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47112 * 89.99555 * 10 8 6 12 12 H 1.48497 * 109.46864 * 209.99834 * 10 8 6 13 13 H 1.48502 * 109.46985 * 329.99428 * 10 8 6 14 14 N 1.46906 * 109.47160 * 120.00121 * 2 1 3 15 15 C 1.46898 * 110.99888 * 275.00077 * 14 2 1 16 16 C 1.53007 * 109.46764 * 179.97438 * 15 14 2 17 17 C 1.50699 * 109.46751 * 180.02562 * 16 15 14 18 18 C 1.38426 * 120.02342 * 269.72345 * 17 16 15 19 19 F 1.35099 * 120.00916 * 359.97438 * 18 17 16 20 20 C 1.38470 * 119.97256 * 179.70558 * 18 17 16 21 21 C 1.38207 * 120.02407 * 0.59106 * 20 18 17 22 22 C 1.38205 * 120.05376 * 359.68623 * 21 20 18 23 23 C 1.38415 * 120.02629 * 89.99988 * 17 16 15 24 24 F 1.35097 * 120.01179 * 359.97438 * 23 17 16 25 25 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 26 26 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 27 27 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46869 * 294.99887 * 4 2 1 29 29 H 1.09000 * 109.46715 * 55.00379 * 4 2 1 30 30 H 1.09002 * 109.47050 * 299.99956 * 5 4 2 31 31 H 1.09000 * 109.47076 * 60.00044 * 5 4 2 32 32 H 0.97006 * 120.00407 * 180.02562 * 9 8 6 33 33 H 1.00902 * 110.99923 * 38.96018 * 14 2 1 34 34 H 1.08995 * 109.47296 * 299.99911 * 15 14 2 35 35 H 1.08997 * 109.47334 * 60.00212 * 15 14 2 36 36 H 1.09004 * 109.47056 * 299.99764 * 16 15 14 37 37 H 1.08997 * 109.46954 * 60.00063 * 16 15 14 38 38 H 1.08005 * 119.98835 * 180.32641 * 20 18 17 39 39 H 1.08001 * 119.97236 * 179.70437 * 21 20 18 40 40 H 1.07996 * 119.99240 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3231 -2.5445 7 1 3.3686 -1.8029 -3.2140 8 6 5.4183 -1.3592 -2.8164 9 7 5.8566 -1.9782 -3.8907 10 14 6.6265 -0.5287 -1.6587 11 1 7.0621 -1.4967 -0.6202 12 1 7.8082 -0.0625 -2.4277 13 1 5.9695 0.6333 -1.0079 14 7 2.0197 -0.6925 1.1995 15 6 2.0824 0.2225 2.3469 16 6 2.5950 -0.5334 3.5745 17 6 2.6588 0.4052 4.7518 18 6 3.8159 1.1218 5.0044 19 9 4.8888 0.9797 4.1957 20 6 3.8713 1.9885 6.0828 21 6 2.7761 2.1291 6.9140 22 6 1.6223 1.4099 6.6662 23 6 1.5625 0.5471 5.5847 24 9 0.4343 -0.1555 5.3423 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7517 -1.7715 -1.2056 29 1 1.6054 -0.2616 -2.1370 30 1 3.8532 0.4370 -1.3573 31 1 3.9994 -1.0728 -0.4259 32 1 6.8073 -2.0039 -4.0818 33 1 1.4496 -1.4980 1.4100 34 1 2.7588 1.0461 2.1183 35 1 1.0871 0.6162 2.5526 36 1 1.9183 -1.3567 3.8030 37 1 3.5903 -0.9274 3.3691 38 1 4.7722 2.5518 6.2771 39 1 2.8219 2.8018 7.7577 40 1 0.7672 1.5201 7.3166 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:10 Heat of formation + Delta-G solvation = -85.689896 kcal Electronic energy + Delta-G solvation = -21883.978500 eV Core-core repulsion = 18333.789320 eV Total energy + Delta-G solvation = -3550.189180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.28195 -49.16131 -39.25039 -37.46340 -34.40686 -32.83168 -31.18056 -30.61592 -29.51674 -27.35574 -25.24148 -23.35127 -23.16859 -21.45167 -21.01665 -19.76455 -18.39636 -17.61830 -16.54655 -16.45481 -16.15470 -15.84488 -15.49618 -15.37003 -14.94760 -14.65225 -14.18165 -14.09135 -13.80693 -13.05499 -12.93999 -12.80528 -12.58710 -12.42277 -12.32597 -12.19593 -11.97075 -11.63135 -11.36256 -11.28608 -11.08796 -10.77993 -10.39919 -9.80950 -9.57994 -9.44591 -9.14675 -9.08386 -8.96681 -8.38995 -8.01662 -5.90680 -3.86477 0.62563 0.64104 3.00728 3.43694 3.49471 3.56983 3.59171 4.08517 4.09807 4.35213 4.39235 4.59783 4.69285 4.83035 5.05107 5.16364 5.29061 5.39063 5.45311 5.47042 5.51889 5.59772 5.61453 5.63127 5.68001 5.78667 5.96270 6.01210 6.10828 6.23084 6.32227 6.44589 6.57216 6.75949 7.14594 7.35228 7.57865 7.69827 7.77890 7.98328 8.69909 9.15575 9.73880 11.23214 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.004175 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.487732 B = 6704.444766 C = 7942.361286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.071 0.929 4 C -0.089 4.089 5 C -0.007 4.007 6 C -0.516 4.516 7 H 0.068 0.932 8 C 0.063 3.937 9 N -0.910 5.910 10 Si 0.882 3.118 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.265 1.265 14 N -0.674 5.674 15 C 0.069 3.931 16 C -0.082 4.082 17 C -0.147 4.147 18 C 0.134 3.866 19 F -0.123 7.123 20 C -0.164 4.164 21 C -0.068 4.068 22 C -0.165 4.165 23 C 0.129 3.871 24 F -0.129 7.129 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.006 0.994 31 H 0.027 0.973 32 H 0.260 0.740 33 H 0.338 0.662 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.644 8.701 24.566 27.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.028 4.028 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.044 4.044 6 C -0.554 4.554 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.709 3.291 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.190 1.190 14 N -0.304 5.304 15 C -0.061 4.061 16 C -0.120 4.120 17 C -0.150 4.150 18 C 0.115 3.885 19 F -0.101 7.101 20 C -0.183 4.183 21 C -0.086 4.086 22 C -0.184 4.184 23 C 0.110 3.890 24 F -0.108 7.108 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.025 0.975 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.156 0.844 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.817 8.706 24.247 27.229 hybrid contribution -0.230 0.347 0.568 0.704 sum -9.047 9.053 24.814 27.921 Atomic orbital electron populations 1.22514 0.98242 1.01760 1.01372 1.21774 0.91344 0.98282 0.91414 0.91063 1.21449 0.98969 0.99032 0.93286 1.19476 0.91504 0.96169 0.97278 1.21267 0.92810 1.33847 1.07470 0.91412 1.25021 0.98455 0.95075 0.95097 1.69931 1.14386 1.44146 1.26562 0.86745 0.80530 0.80700 0.81090 1.20339 1.21811 1.19006 1.60516 1.57851 1.09129 1.02950 1.21856 0.98835 0.95737 0.89635 1.20507 1.04617 0.96288 0.90569 1.19961 0.92812 1.02249 0.99945 1.17284 0.83680 0.97185 0.90376 1.91585 1.52799 1.94263 1.71428 1.21251 1.01144 1.00492 0.95397 1.20824 0.91287 0.97865 0.98659 1.21195 1.00482 0.98582 0.98176 1.17230 0.82497 0.93705 0.95594 1.91523 1.48523 1.76710 1.93997 0.93715 0.92079 0.92575 0.92842 0.92855 0.97537 0.95473 0.92997 0.84445 0.90983 0.95616 0.90175 0.88800 0.83968 0.84000 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 9.16 37.16 0.34 -2.07 16 2 C 0.08 1.33 2.59 -67.71 -0.18 1.16 16 3 H 0.07 1.21 7.80 -51.93 -0.40 0.80 16 4 C -0.09 -1.82 4.83 -26.73 -0.13 -1.95 16 5 C -0.01 -0.17 3.93 -27.88 -0.11 -0.28 16 6 C -0.52 -15.38 9.66 -34.44 -0.33 -15.72 16 7 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 8 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -29.20 13.96 55.43 0.77 -28.43 16 10 Si 0.88 23.08 27.47 -169.99 -4.67 18.41 16 11 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 13 H -0.27 -6.76 6.54 56.52 0.37 -6.39 16 14 N -0.67 -10.54 5.70 -106.72 -0.61 -11.15 16 15 C 0.07 0.94 5.47 -3.82 -0.02 0.92 16 16 C -0.08 -1.02 5.25 -27.88 -0.15 -1.17 16 17 C -0.15 -1.66 5.15 -104.49 -0.54 -2.20 16 18 C 0.13 1.49 7.24 -39.43 -0.29 1.21 16 19 F -0.12 -1.63 16.47 2.25 0.04 -1.60 16 20 C -0.16 -1.35 10.02 -39.51 -0.40 -1.74 16 21 C -0.07 -0.45 10.04 -39.60 -0.40 -0.84 16 22 C -0.17 -1.25 10.03 -39.51 -0.40 -1.65 16 23 C 0.13 1.30 7.24 -39.43 -0.29 1.02 16 24 F -0.13 -1.41 16.48 2.25 0.04 -1.37 16 25 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.01 0.16 7.20 -51.93 -0.37 -0.21 16 31 H 0.03 0.69 7.18 -51.93 -0.37 0.32 16 32 H 0.26 7.82 8.31 -40.82 -0.34 7.49 16 33 H 0.34 4.75 8.47 -39.29 -0.33 4.42 16 34 H 0.07 1.08 8.05 -51.93 -0.42 0.66 16 35 H 0.03 0.33 7.44 -51.93 -0.39 -0.05 16 36 H 0.08 0.92 7.64 -51.93 -0.40 0.52 16 37 H 0.09 1.29 7.63 -51.93 -0.40 0.89 16 38 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 338.81 15.07 5.11 5.11 Total: -1.00 -32.88 338.81 -8.31 -41.18 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -6.01 Total: -0.68 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -2.97 Total: -21.48 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.16 Total: -39.58 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.07 Total: -2.97 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.67 Total: 18.41 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.88 -8.31 -41.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.505 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds