Wall clock time and date at job start Tue Mar 31 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.46975 * 175.00015 * 4 2 1 6 6 C 1.50703 * 109.47069 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99426 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00286 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00199 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99876 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47112 * 89.99555 * 10 8 6 12 12 H 1.48497 * 109.46864 * 209.99834 * 10 8 6 13 13 H 1.48502 * 109.46985 * 329.99428 * 10 8 6 14 14 N 1.46906 * 109.47160 * 120.00121 * 2 1 3 15 15 C 1.46898 * 110.99888 * 275.00077 * 14 2 1 16 16 C 1.53007 * 109.46764 * 179.97438 * 15 14 2 17 17 C 1.50699 * 109.46751 * 180.02562 * 16 15 14 18 18 C 1.38426 * 120.02342 * 269.72345 * 17 16 15 19 19 F 1.35099 * 120.00916 * 359.97438 * 18 17 16 20 20 C 1.38470 * 119.97256 * 179.70558 * 18 17 16 21 21 C 1.38207 * 120.02407 * 0.59106 * 20 18 17 22 22 C 1.38205 * 120.05376 * 359.68623 * 21 20 18 23 23 C 1.38415 * 120.02629 * 89.99988 * 17 16 15 24 24 F 1.35097 * 120.01179 * 359.97438 * 23 17 16 25 25 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 26 26 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 27 27 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46869 * 294.99887 * 4 2 1 29 29 H 1.09000 * 109.46715 * 55.00379 * 4 2 1 30 30 H 1.09002 * 109.47050 * 299.99956 * 5 4 2 31 31 H 1.09000 * 109.47076 * 60.00044 * 5 4 2 32 32 H 0.97006 * 120.00407 * 180.02562 * 9 8 6 33 33 H 1.00902 * 110.99923 * 38.96018 * 14 2 1 34 34 H 1.08995 * 109.47296 * 299.99911 * 15 14 2 35 35 H 1.08997 * 109.47334 * 60.00212 * 15 14 2 36 36 H 1.09004 * 109.47056 * 299.99764 * 16 15 14 37 37 H 1.08997 * 109.46954 * 60.00063 * 16 15 14 38 38 H 1.08005 * 119.98835 * 180.32641 * 20 18 17 39 39 H 1.08001 * 119.97236 * 179.70437 * 21 20 18 40 40 H 1.07996 * 119.99240 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3231 -2.5445 7 1 3.3686 -1.8029 -3.2140 8 6 5.4183 -1.3592 -2.8164 9 7 5.8566 -1.9782 -3.8907 10 14 6.6265 -0.5287 -1.6587 11 1 7.0621 -1.4967 -0.6202 12 1 7.8082 -0.0625 -2.4277 13 1 5.9695 0.6333 -1.0079 14 7 2.0197 -0.6925 1.1995 15 6 2.0824 0.2225 2.3469 16 6 2.5950 -0.5334 3.5745 17 6 2.6588 0.4052 4.7518 18 6 3.8159 1.1218 5.0044 19 9 4.8888 0.9797 4.1957 20 6 3.8713 1.9885 6.0828 21 6 2.7761 2.1291 6.9140 22 6 1.6223 1.4099 6.6662 23 6 1.5625 0.5471 5.5847 24 9 0.4343 -0.1555 5.3423 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7517 -1.7715 -1.2056 29 1 1.6054 -0.2616 -2.1370 30 1 3.8532 0.4370 -1.3573 31 1 3.9994 -1.0728 -0.4259 32 1 6.8073 -2.0039 -4.0818 33 1 1.4496 -1.4980 1.4100 34 1 2.7588 1.0461 2.1183 35 1 1.0871 0.6162 2.5526 36 1 1.9183 -1.3567 3.8030 37 1 3.5903 -0.9274 3.3691 38 1 4.7722 2.5518 6.2771 39 1 2.8219 2.8018 7.7577 40 1 0.7672 1.5201 7.3166 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:10 Heat of formation + Delta-G solvation = -105.336826 kcal Electronic energy + Delta-G solvation = -21884.830455 eV Core-core repulsion = 18333.789320 eV Total energy + Delta-G solvation = -3551.041135 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.03417 -50.03067 -39.95574 -38.72494 -35.76326 -34.68027 -32.73046 -31.26379 -30.95926 -28.31345 -27.10850 -24.32166 -23.85720 -22.79861 -22.36802 -21.34070 -19.13457 -18.82798 -18.38917 -17.30181 -16.91333 -16.60413 -16.48690 -16.32623 -16.31985 -16.09191 -15.42988 -15.40068 -14.80466 -14.65083 -14.18970 -14.07275 -13.83648 -13.73873 -13.39007 -13.24457 -12.99566 -12.90062 -12.86965 -12.56723 -12.18334 -12.14241 -11.92724 -11.73026 -11.51933 -11.35558 -11.14176 -10.73294 -9.87173 -9.76395 -9.24372 -8.27976 -6.29529 -0.03711 -0.03275 1.34847 1.35806 1.49451 2.36505 2.37329 2.88894 3.08096 3.10023 3.41775 3.63820 3.68891 3.92679 3.96724 4.11227 4.14565 4.22800 4.33846 4.41410 4.49238 4.70776 4.72762 4.80179 4.88822 4.90774 4.97332 4.97668 5.02012 5.09727 5.14093 5.20487 5.21517 5.35532 5.58425 5.68518 5.75065 5.78701 6.16367 6.33307 6.55365 6.78851 7.34852 8.89226 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.004175 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.487732 B = 6704.444766 C = 7942.361286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.089 3.911 3 H 0.066 0.934 4 C -0.084 4.084 5 C 0.001 3.999 6 C -0.529 4.529 7 H 0.031 0.969 8 C 0.004 3.996 9 N -0.954 5.954 10 Si 0.951 3.049 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.254 1.254 14 N -0.692 5.692 15 C 0.078 3.922 16 C -0.076 4.076 17 C -0.165 4.165 18 C 0.105 3.895 19 F -0.144 7.144 20 C -0.159 4.159 21 C -0.054 4.054 22 C -0.156 4.156 23 C 0.113 3.887 24 F -0.138 7.138 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.004 0.996 31 H 0.023 0.977 32 H 0.265 0.735 33 H 0.346 0.654 34 H 0.055 0.945 35 H 0.038 0.962 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.162 0.838 39 H 0.183 0.817 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.364 10.608 27.855 31.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 H 0.085 0.915 4 C -0.122 4.122 5 C -0.037 4.037 6 C -0.567 4.567 7 H 0.049 0.951 8 C -0.192 4.192 9 N -0.596 5.596 10 Si 0.775 3.225 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.178 1.178 14 N -0.324 5.324 15 C -0.051 4.051 16 C -0.114 4.114 17 C -0.167 4.167 18 C 0.085 3.915 19 F -0.123 7.123 20 C -0.178 4.178 21 C -0.072 4.072 22 C -0.174 4.174 23 C 0.094 3.906 24 F -0.116 7.116 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.165 0.835 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.180 0.820 39 H 0.201 0.799 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.558 10.612 27.544 31.027 hybrid contribution -0.047 -0.271 -0.458 0.534 sum -9.604 10.341 27.086 30.543 Atomic orbital electron populations 1.22381 0.95442 1.02554 1.02461 1.21545 0.93478 0.97155 0.89859 0.91548 1.21335 0.95801 0.99373 0.95672 1.19367 0.94716 0.94957 0.94620 1.21645 0.92609 1.33852 1.08576 0.95094 1.25959 1.00612 0.95801 0.96819 1.70070 1.15157 1.45756 1.28571 0.85651 0.78034 0.79965 0.78885 1.19491 1.20778 1.17786 1.60412 1.58520 1.09980 1.03467 1.21763 0.99078 0.95003 0.89296 1.20358 1.03382 0.96759 0.90873 1.19891 0.93787 1.02868 1.00150 1.17651 0.83300 0.98922 0.91609 1.91522 1.53796 1.94636 1.72350 1.21582 1.02576 0.99374 0.94255 1.21310 0.89839 0.97208 0.98795 1.21586 1.01733 0.97000 0.97106 1.17448 0.81962 0.94685 0.96519 1.91498 1.48824 1.77111 1.94191 0.91999 0.91576 0.91960 0.93439 0.93112 0.97781 0.95841 0.92616 0.83493 0.92594 0.94363 0.89620 0.90861 0.82039 0.79946 0.81410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 9.16 71.98 0.66 -3.54 16 2 C 0.09 2.85 2.59 44.92 0.12 2.97 16 3 H 0.07 2.19 7.80 -2.39 -0.02 2.17 16 4 C -0.08 -3.43 4.83 30.60 0.15 -3.28 16 5 C 0.00 0.04 3.93 29.85 0.12 0.16 16 6 C -0.53 -32.43 9.66 25.60 0.25 -32.18 16 7 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 8 C 0.00 0.26 5.47 84.65 0.46 0.72 16 9 N -0.95 -62.63 13.96 21.45 0.30 -62.33 16 10 Si 0.95 48.02 27.47 68.60 1.88 49.91 16 11 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 13 H -0.25 -12.26 6.54 99.48 0.65 -11.61 16 14 N -0.69 -21.26 5.70 -491.55 -2.80 -24.07 16 15 C 0.08 2.09 5.47 86.31 0.47 2.56 16 16 C -0.08 -1.89 5.25 29.85 0.16 -1.73 16 17 C -0.16 -3.61 5.15 -19.78 -0.10 -3.71 16 18 C 0.10 2.24 7.24 22.37 0.16 2.41 16 19 F -0.14 -3.91 16.47 44.97 0.74 -3.17 16 20 C -0.16 -2.20 10.02 22.32 0.22 -1.98 16 21 C -0.05 -0.48 10.04 22.25 0.22 -0.26 16 22 C -0.16 -1.81 10.03 22.32 0.22 -1.59 16 23 C 0.11 2.08 7.24 22.37 0.16 2.24 16 24 F -0.14 -2.79 16.48 44.97 0.74 -2.05 16 25 H 0.06 1.34 7.45 -2.39 -0.02 1.33 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.00 0.20 7.20 -2.39 -0.02 0.18 16 31 H 0.02 1.20 7.18 -2.39 -0.02 1.18 16 32 H 0.27 16.19 8.31 -92.70 -0.77 15.42 16 33 H 0.35 9.48 8.47 -89.69 -0.76 8.72 16 34 H 0.06 1.67 8.05 -2.39 -0.02 1.65 16 35 H 0.04 0.93 7.44 -2.39 -0.02 0.91 16 36 H 0.09 1.96 7.64 -2.39 -0.02 1.94 16 37 H 0.07 2.09 7.63 -2.39 -0.02 2.07 16 38 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.18 0.18 8.06 -2.91 -0.02 0.16 16 40 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -73.13 338.81 4.35 -68.77 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.22 Total: 10.15 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 3.27 Total: -37.21 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -2.50 Total: -86.39 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 1.48 Total: -5.22 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 1.88 Total: 49.91 kcal Total: -73.13 4.35 -68.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.564 kcal (2) G-P(sol) polarization free energy of solvation -73.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds