Wall clock time and date at job start Tue Mar 31 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.46830 * 2 1 4 4 C 1.52996 * 109.47598 * 120.00257 * 2 1 3 5 5 C 1.53000 * 109.47465 * 185.00227 * 4 2 1 6 6 C 1.50696 * 109.46857 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00290 * 359.97438 * 6 5 4 8 8 C 1.37886 * 119.99734 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99614 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00018 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47119 * 59.99915 * 10 8 6 12 12 H 1.48500 * 109.47257 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47042 * 300.00086 * 10 8 6 14 14 N 1.46906 * 109.47228 * 240.00513 * 2 1 3 15 15 C 1.46896 * 111.00024 * 84.99799 * 14 2 1 16 16 C 1.53000 * 109.47074 * 180.02562 * 15 14 2 17 17 C 1.50706 * 109.47116 * 179.97438 * 16 15 14 18 18 C 1.38256 * 119.96725 * 269.72531 * 17 16 15 19 19 C 1.38212 * 120.06750 * 179.76639 * 18 17 16 20 20 C 1.38410 * 120.00232 * 0.51239 * 19 18 17 21 21 F 1.35096 * 120.03544 * 179.72519 * 20 19 18 22 22 C 1.38651 * 119.92846 * 359.73977 * 20 19 18 23 23 F 1.35096 * 120.03160 * 179.97438 * 22 20 19 24 24 C 1.38214 * 119.95957 * 89.99834 * 17 16 15 25 25 H 1.08999 * 109.47189 * 299.99850 * 1 2 3 26 26 H 1.08999 * 109.47565 * 59.99749 * 1 2 3 27 27 H 1.09003 * 109.46910 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46993 * 305.00234 * 4 2 1 29 29 H 1.09005 * 109.46864 * 64.99825 * 4 2 1 30 30 H 1.08994 * 109.46551 * 299.99675 * 5 4 2 31 31 H 1.09000 * 109.46964 * 59.99811 * 5 4 2 32 32 H 0.97000 * 119.99363 * 180.02562 * 9 8 6 33 33 H 1.00899 * 110.99340 * 321.04438 * 14 2 1 34 34 H 1.09000 * 109.47512 * 59.99863 * 15 14 2 35 35 H 1.09008 * 109.47405 * 300.00354 * 15 14 2 36 36 H 1.09000 * 109.46884 * 60.00395 * 16 15 14 37 37 H 1.09000 * 109.46955 * 299.99711 * 16 15 14 38 38 H 1.08000 * 119.96415 * 0.02562 * 18 17 16 39 39 H 1.07998 * 119.99384 * 180.24910 * 19 18 17 40 40 H 1.08002 * 120.00291 * 359.96315 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3136 6 6 4.0672 -1.3242 2.5436 7 1 3.3688 -1.8047 3.2128 8 6 5.4186 -1.3613 2.8149 9 7 6.2691 -0.7767 1.9997 10 14 6.0413 -2.2420 4.3400 11 1 5.6479 -3.6728 4.2807 12 1 7.5214 -2.1384 4.4018 13 1 5.4497 -1.6157 5.5495 14 7 2.0197 -0.6924 -1.1995 15 6 2.0824 0.2227 -2.3469 16 6 2.5950 -0.5329 -3.5745 17 6 2.6588 0.4058 -4.7518 18 6 1.5649 0.5423 -5.5862 19 6 1.6195 1.4063 -6.6637 20 6 2.7737 2.1279 -6.9145 21 9 2.8296 2.9683 -7.9707 22 6 3.8724 1.9870 -6.0807 23 9 5.0002 2.6899 -6.3238 24 6 3.8128 1.1250 -4.9994 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -0.2618 2.1370 29 1 1.7517 -1.7716 1.2054 30 1 3.9994 -1.0727 0.4259 31 1 3.8532 0.4370 1.3573 32 1 7.2198 -0.8031 2.1904 33 1 1.4495 -1.4978 -1.4101 34 1 2.7587 1.0464 -2.1182 35 1 1.0870 0.6165 -2.5525 36 1 1.9182 -1.3562 -3.8031 37 1 3.5904 -0.9269 -3.3692 38 1 0.6655 -0.0235 -5.3935 39 1 0.7629 1.5150 -7.3124 40 1 4.6680 1.0146 -4.3490 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:17 Heat of formation + Delta-G solvation = -90.466037 kcal Electronic energy + Delta-G solvation = -21217.007435 eV Core-core repulsion = 17666.611146 eV Total energy + Delta-G solvation = -3550.396289 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.64477 -48.72019 -39.49024 -37.32327 -34.10486 -32.80297 -31.16605 -30.75366 -29.11150 -27.12350 -25.05160 -23.55866 -23.07700 -21.36681 -21.29387 -19.74890 -18.12773 -17.38854 -17.09941 -16.49631 -16.10543 -15.58581 -15.13637 -14.94912 -14.75669 -14.62461 -14.36092 -14.13506 -14.02147 -13.33209 -12.95168 -12.68688 -12.51674 -12.38722 -12.29921 -11.83578 -11.68254 -11.46710 -11.26705 -11.11816 -11.00158 -10.79926 -10.46396 -10.20142 -9.63372 -9.32327 -9.20911 -8.92508 -8.81984 -8.23151 -7.92124 -5.88252 -3.89353 0.65078 0.74164 3.08164 3.38591 3.42984 3.45323 3.55014 4.09306 4.21820 4.31813 4.54256 4.65105 4.80274 4.87405 5.09620 5.23293 5.34550 5.47071 5.47360 5.53617 5.55122 5.59394 5.64806 5.66501 5.74220 5.89906 6.05758 6.10942 6.24978 6.27777 6.39866 6.50987 6.66548 6.88140 7.29853 7.46294 7.77200 7.84836 8.08042 8.23110 8.57922 9.19457 9.73162 11.22749 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.020185 B = 0.003039 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.853454 B = 9211.422378 C =10290.658598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.071 0.929 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.671 5.671 15 C 0.066 3.934 16 C -0.083 4.083 17 C -0.053 4.053 18 C -0.100 4.100 19 C -0.125 4.125 20 C 0.056 3.944 21 F -0.132 7.132 22 C 0.071 3.929 23 F -0.129 7.129 24 C -0.120 4.120 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.006 0.994 32 H 0.258 0.742 33 H 0.335 0.665 34 H 0.074 0.926 35 H 0.024 0.976 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.558 3.438 -17.738 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.025 4.025 3 H 0.090 0.910 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.302 5.302 15 C -0.063 4.063 16 C -0.120 4.120 17 C -0.054 4.054 18 C -0.118 4.118 19 C -0.144 4.144 20 C 0.036 3.964 21 F -0.111 7.111 22 C 0.051 3.949 23 F -0.107 7.107 24 C -0.139 4.139 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.152 0.848 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.645 3.621 -17.642 20.920 hybrid contribution -0.293 0.008 0.351 0.458 sum -10.938 3.629 -17.290 20.779 Atomic orbital electron populations 1.22534 0.98610 1.01516 1.01267 1.21736 0.90902 0.98384 0.91524 0.91030 1.21633 1.00634 0.98360 0.93019 1.18987 0.88276 0.96445 0.97008 1.21317 0.91830 1.34106 1.08538 0.93184 1.24998 0.97143 0.95785 0.96500 1.69965 1.02196 1.44338 1.36952 0.86745 0.77583 0.80282 0.83848 1.20378 1.21402 1.20437 1.60498 1.57724 1.09002 1.02928 1.21912 0.98873 0.95846 0.89685 1.20667 1.04372 0.96137 0.90856 1.19879 0.92357 0.96602 0.96513 1.21025 0.98877 0.98130 0.93778 1.21054 0.96664 0.97064 0.99574 1.17703 0.95318 0.95536 0.87882 1.91517 1.96824 1.68881 1.53889 1.17716 0.82908 0.96762 0.97536 1.91538 1.48509 1.76731 1.93960 1.21154 1.00402 0.95948 0.96382 0.92248 0.93778 0.92770 0.93551 0.93468 0.94921 0.97544 0.93193 0.84774 0.90768 0.95756 0.90509 0.88960 0.84315 0.83830 0.83118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 9.16 37.16 0.34 -1.95 16 2 C 0.08 1.34 2.59 -67.71 -0.18 1.17 16 3 H 0.07 1.21 7.80 -51.92 -0.40 0.81 16 4 C -0.10 -1.99 4.83 -26.73 -0.13 -2.12 16 5 C 0.03 0.77 4.86 -27.89 -0.14 0.64 16 6 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 7 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 10 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 N -0.67 -9.87 5.70 -106.72 -0.61 -10.48 16 15 C 0.07 0.80 5.47 -3.83 -0.02 0.78 16 16 C -0.08 -0.83 5.60 -27.88 -0.16 -0.99 16 17 C -0.05 -0.50 5.13 -104.62 -0.54 -1.04 16 18 C -0.10 -0.80 9.69 -39.58 -0.38 -1.18 16 19 C -0.12 -1.04 10.02 -39.53 -0.40 -1.44 16 20 C 0.06 0.60 7.31 -39.37 -0.29 0.31 16 21 F -0.13 -1.55 17.18 2.25 0.04 -1.51 16 22 C 0.07 0.82 7.31 -39.36 -0.29 0.54 16 23 F -0.13 -1.67 17.18 2.25 0.04 -1.63 16 24 C -0.12 -1.28 9.68 -39.53 -0.38 -1.67 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.50 7.45 -51.93 -0.39 0.11 16 27 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.03 0.90 7.75 -51.93 -0.40 0.50 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.33 4.32 8.47 -39.29 -0.33 3.99 16 34 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 35 H 0.02 0.26 7.44 -51.92 -0.39 -0.12 16 36 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 37 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 38 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -31.23 344.49 -8.68 -39.91 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.09 Total: -1.26 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -2.96 Total: -20.63 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.13 Total: -37.01 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.08 Total: -3.15 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.23 -8.68 -39.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.555 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds