Wall clock time and date at job start Tue Mar 31 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.46830 * 2 1 4 4 C 1.52996 * 109.47598 * 120.00257 * 2 1 3 5 5 C 1.53000 * 109.47465 * 185.00227 * 4 2 1 6 6 C 1.50696 * 109.46857 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00290 * 359.97438 * 6 5 4 8 8 C 1.37886 * 119.99734 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99614 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00018 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47119 * 59.99915 * 10 8 6 12 12 H 1.48500 * 109.47257 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47042 * 300.00086 * 10 8 6 14 14 N 1.46906 * 109.47228 * 240.00513 * 2 1 3 15 15 C 1.46896 * 111.00024 * 84.99799 * 14 2 1 16 16 C 1.53000 * 109.47074 * 180.02562 * 15 14 2 17 17 C 1.50706 * 109.47116 * 179.97438 * 16 15 14 18 18 C 1.38256 * 119.96725 * 269.72531 * 17 16 15 19 19 C 1.38212 * 120.06750 * 179.76639 * 18 17 16 20 20 C 1.38410 * 120.00232 * 0.51239 * 19 18 17 21 21 F 1.35096 * 120.03544 * 179.72519 * 20 19 18 22 22 C 1.38651 * 119.92846 * 359.73977 * 20 19 18 23 23 F 1.35096 * 120.03160 * 179.97438 * 22 20 19 24 24 C 1.38214 * 119.95957 * 89.99834 * 17 16 15 25 25 H 1.08999 * 109.47189 * 299.99850 * 1 2 3 26 26 H 1.08999 * 109.47565 * 59.99749 * 1 2 3 27 27 H 1.09003 * 109.46910 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46993 * 305.00234 * 4 2 1 29 29 H 1.09005 * 109.46864 * 64.99825 * 4 2 1 30 30 H 1.08994 * 109.46551 * 299.99675 * 5 4 2 31 31 H 1.09000 * 109.46964 * 59.99811 * 5 4 2 32 32 H 0.97000 * 119.99363 * 180.02562 * 9 8 6 33 33 H 1.00899 * 110.99340 * 321.04438 * 14 2 1 34 34 H 1.09000 * 109.47512 * 59.99863 * 15 14 2 35 35 H 1.09008 * 109.47405 * 300.00354 * 15 14 2 36 36 H 1.09000 * 109.46884 * 60.00395 * 16 15 14 37 37 H 1.09000 * 109.46955 * 299.99711 * 16 15 14 38 38 H 1.08000 * 119.96415 * 0.02562 * 18 17 16 39 39 H 1.07998 * 119.99384 * 180.24910 * 19 18 17 40 40 H 1.08002 * 120.00291 * 359.96315 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3136 6 6 4.0672 -1.3242 2.5436 7 1 3.3688 -1.8047 3.2128 8 6 5.4186 -1.3613 2.8149 9 7 6.2691 -0.7767 1.9997 10 14 6.0413 -2.2420 4.3400 11 1 5.6479 -3.6728 4.2807 12 1 7.5214 -2.1384 4.4018 13 1 5.4497 -1.6157 5.5495 14 7 2.0197 -0.6924 -1.1995 15 6 2.0824 0.2227 -2.3469 16 6 2.5950 -0.5329 -3.5745 17 6 2.6588 0.4058 -4.7518 18 6 1.5649 0.5423 -5.5862 19 6 1.6195 1.4063 -6.6637 20 6 2.7737 2.1279 -6.9145 21 9 2.8296 2.9683 -7.9707 22 6 3.8724 1.9870 -6.0807 23 9 5.0002 2.6899 -6.3238 24 6 3.8128 1.1250 -4.9994 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -0.2618 2.1370 29 1 1.7517 -1.7716 1.2054 30 1 3.9994 -1.0727 0.4259 31 1 3.8532 0.4370 1.3573 32 1 7.2198 -0.8031 2.1904 33 1 1.4495 -1.4978 -1.4101 34 1 2.7587 1.0464 -2.1182 35 1 1.0870 0.6165 -2.5525 36 1 1.9182 -1.3562 -3.8031 37 1 3.5904 -0.9269 -3.3692 38 1 0.6655 -0.0235 -5.3935 39 1 0.7629 1.5150 -7.3124 40 1 4.6680 1.0146 -4.3490 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:17 Heat of formation + Delta-G solvation = -107.904278 kcal Electronic energy + Delta-G solvation = -21217.763613 eV Core-core repulsion = 17666.611146 eV Total energy + Delta-G solvation = -3551.152468 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.53533 -49.62108 -40.26912 -38.54666 -35.58246 -34.45824 -32.32767 -31.78283 -30.54291 -28.04728 -26.93992 -24.36921 -24.03753 -23.04201 -22.23557 -21.22493 -18.96227 -18.33918 -18.20948 -17.93148 -17.38153 -16.69811 -16.48182 -16.05852 -16.05031 -15.62266 -15.47173 -15.03660 -14.98273 -14.52979 -14.31771 -14.00286 -13.85384 -13.52317 -13.37970 -13.11535 -12.99374 -12.80195 -12.61258 -12.38853 -12.28624 -12.18388 -11.95904 -11.66402 -11.48843 -11.17839 -10.93888 -10.46149 -10.08514 -9.63890 -9.06153 -8.11915 -6.22198 -0.13853 -0.00224 1.40964 1.44114 1.51801 2.32942 2.45122 2.76769 3.20172 3.22820 3.32903 3.57963 3.81557 4.02812 4.10562 4.12984 4.25881 4.29649 4.47474 4.52520 4.67246 4.74612 4.81080 4.83129 4.86121 5.01628 5.02489 5.04768 5.12724 5.14031 5.25502 5.33987 5.47705 5.51552 5.61650 5.75146 5.92106 6.05915 6.31314 6.37135 6.74879 6.98089 7.45811 8.98966 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.020185 B = 0.003039 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.853454 B = 9211.422378 C =10290.658598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 H 0.054 0.946 4 C -0.089 4.089 5 C 0.038 3.962 6 C -0.543 4.543 7 H 0.055 0.945 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.960 3.040 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.268 1.268 14 N -0.693 5.693 15 C 0.071 3.929 16 C -0.073 4.073 17 C -0.055 4.055 18 C -0.084 4.084 19 C -0.113 4.113 20 C 0.042 3.958 21 F -0.142 7.142 22 C 0.045 3.955 23 F -0.146 7.146 24 C -0.132 4.132 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.006 0.994 31 H -0.027 1.027 32 H 0.260 0.740 33 H 0.347 0.653 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.234 2.176 -17.823 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 H 0.073 0.927 4 C -0.127 4.127 5 C 0.001 3.999 6 C -0.581 4.581 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.193 1.193 14 N -0.325 5.325 15 C -0.058 4.058 16 C -0.111 4.111 17 C -0.056 4.056 18 C -0.102 4.102 19 C -0.131 4.131 20 C 0.022 3.978 21 F -0.120 7.120 22 C 0.025 3.975 23 F -0.124 7.124 24 C -0.151 4.151 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.025 0.975 31 H -0.009 1.009 32 H 0.069 0.931 33 H 0.167 0.833 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.122 0.878 37 H 0.089 0.911 38 H 0.193 0.807 39 H 0.193 0.807 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.341 2.354 -17.732 22.315 hybrid contribution 0.548 0.403 0.362 0.771 sum -12.793 2.757 -17.369 21.748 Atomic orbital electron populations 1.22378 0.95192 1.02644 1.02440 1.21487 0.93451 0.96720 0.90292 0.92717 1.21464 0.96369 0.99231 0.95610 1.18824 0.92374 0.93615 0.95062 1.21809 0.92452 1.34344 1.09530 0.92635 1.25955 0.97463 0.96551 0.99959 1.70115 1.02521 1.45663 1.39026 0.85586 0.76942 0.79346 0.79659 1.19159 1.21031 1.19332 1.60338 1.58619 1.10093 1.03457 1.21858 0.99557 0.94929 0.89432 1.20558 1.03766 0.96653 0.90121 1.19894 0.92557 0.96331 0.96778 1.21390 0.99138 0.97270 0.92390 1.21416 0.96387 0.95632 0.99681 1.17998 0.95979 0.96108 0.87691 1.91490 1.96922 1.69326 1.54287 1.17973 0.83081 0.97727 0.98672 1.91484 1.49507 1.77264 1.94176 1.21177 1.01038 0.96522 0.96316 0.92095 0.91605 0.91620 0.93516 0.93145 0.97529 1.00867 0.93101 0.83345 0.93442 0.93347 0.87801 0.91103 0.80724 0.80704 0.84125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 9.16 71.98 0.66 -3.11 16 2 C 0.09 2.82 2.59 44.91 0.12 2.94 16 3 H 0.05 1.88 7.80 -2.38 -0.02 1.86 16 4 C -0.09 -3.58 4.83 30.59 0.15 -3.43 16 5 C 0.04 2.06 4.86 29.85 0.15 2.21 16 6 C -0.54 -31.67 9.11 25.60 0.23 -31.43 16 7 H 0.06 3.10 7.74 -2.91 -0.02 3.07 16 8 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 9 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 10 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 14 N -0.69 -19.78 5.70 -491.56 -2.80 -22.58 16 15 C 0.07 1.64 5.47 86.30 0.47 2.11 16 16 C -0.07 -1.37 5.60 29.85 0.17 -1.20 16 17 C -0.05 -0.97 5.13 -19.86 -0.10 -1.07 16 18 C -0.08 -1.04 9.69 22.27 0.22 -0.83 16 19 C -0.11 -1.54 10.02 22.30 0.22 -1.32 16 20 C 0.04 0.88 7.31 22.41 0.16 1.04 16 21 F -0.14 -3.27 17.18 44.97 0.77 -2.49 16 22 C 0.05 1.09 7.31 22.41 0.16 1.25 16 23 F -0.15 -4.05 17.18 44.97 0.77 -3.28 16 24 C -0.13 -2.91 9.68 22.31 0.22 -2.70 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.22 7.45 -2.39 -0.02 1.20 16 27 H 0.06 1.34 8.13 -2.39 -0.02 1.33 16 28 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.01 0.37 7.75 -2.39 -0.02 0.35 16 31 H -0.03 -1.61 8.14 -2.39 -0.02 -1.63 16 32 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.35 8.21 8.47 -89.69 -0.76 7.45 16 34 H 0.05 1.34 8.06 -2.39 -0.02 1.32 16 35 H 0.05 0.90 7.44 -2.38 -0.02 0.88 16 36 H 0.10 1.40 8.08 -2.39 -0.02 1.38 16 37 H 0.07 1.64 8.09 -2.39 -0.02 1.62 16 38 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 39 H 0.18 1.31 8.06 -2.91 -0.02 1.28 16 40 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -70.09 344.49 4.61 -65.48 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.27 Total: 8.88 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 3.28 Total: -35.20 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -2.52 Total: -80.61 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 1.55 Total: -5.77 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -70.09 4.61 -65.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.422 kcal (2) G-P(sol) polarization free energy of solvation -70.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds