Wall clock time and date at job start Tue Mar 31 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47063 * 2 1 4 4 C 1.53001 * 109.47497 * 240.00065 * 2 1 3 5 5 C 1.52996 * 109.47480 * 174.99634 * 4 2 1 6 6 C 1.50698 * 109.47119 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00212 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00163 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99887 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00235 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47155 * 60.00235 * 10 8 6 12 12 H 1.48508 * 109.47054 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47369 * 299.99840 * 10 8 6 14 14 N 1.46902 * 109.47555 * 119.99551 * 2 1 3 15 15 C 1.46897 * 110.99842 * 275.00447 * 14 2 1 16 16 H 1.08996 * 109.47535 * 35.00054 * 15 14 2 17 17 C 1.53004 * 109.47031 * 274.99604 * 15 14 2 18 18 C 1.50706 * 109.46694 * 155.00017 * 15 14 2 19 19 C 1.38199 * 119.97576 * 39.72251 * 18 15 14 20 20 C 1.38481 * 120.02474 * 179.72437 * 19 18 15 21 21 F 1.35095 * 120.01448 * 180.25044 * 20 19 18 22 22 C 1.38417 * 119.96949 * 0.55319 * 20 19 18 23 23 C 1.38420 * 119.95411 * 359.71867 * 22 20 19 24 24 F 1.35097 * 120.01318 * 180.02562 * 23 22 20 25 25 C 1.38207 * 119.97093 * 219.99552 * 18 15 14 26 26 H 1.09002 * 109.47643 * 60.00617 * 1 2 3 27 27 H 1.09007 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47292 * 299.99666 * 1 2 3 29 29 H 1.09006 * 109.46928 * 294.99941 * 4 2 1 30 30 H 1.09002 * 109.47017 * 54.99292 * 4 2 1 31 31 H 1.09000 * 109.46950 * 299.99860 * 5 4 2 32 32 H 1.09002 * 109.47275 * 59.99816 * 5 4 2 33 33 H 0.96990 * 120.00088 * 179.97438 * 9 8 6 34 34 H 1.00898 * 111.00047 * 151.04734 * 14 2 1 35 35 H 1.08999 * 109.47079 * 300.00119 * 17 15 14 36 36 H 1.08992 * 109.47081 * 60.00488 * 17 15 14 37 37 H 1.09003 * 109.47098 * 180.02562 * 17 15 14 38 38 H 1.07995 * 119.99087 * 359.97438 * 19 18 15 39 39 H 1.08002 * 120.02485 * 179.74641 * 22 20 19 40 40 H 1.08002 * 119.99155 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 6 4.0671 -1.3230 -2.5445 7 1 3.3687 -1.8036 -3.2136 8 6 5.4184 -1.3599 -2.8159 9 7 6.2690 -0.7752 -2.0008 10 14 6.0410 -2.2404 -4.3411 11 1 5.4493 -1.6141 -5.5504 12 1 7.5212 -2.1365 -4.4030 13 1 5.6479 -3.6712 -4.2819 14 7 2.0197 -0.6924 1.1995 15 6 2.0824 0.2228 2.3468 16 1 1.2575 0.9330 2.2907 17 6 3.4111 0.9811 2.3222 18 6 1.9787 -0.5675 3.6259 19 6 2.6284 -1.7817 3.7420 20 6 2.5384 -2.5060 4.9188 21 9 3.1778 -3.6905 5.0339 22 6 1.7880 -2.0188 5.9749 23 6 1.1330 -0.8052 5.8555 24 9 0.4007 -0.3283 6.8857 25 6 1.2292 -0.0800 4.6798 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7517 -1.7715 -1.2056 30 1 1.6053 -0.2618 -2.1370 31 1 3.8531 0.4371 -1.3574 32 1 3.9995 -1.0726 -0.4260 33 1 7.2196 -0.8015 -2.1915 34 1 2.9173 -1.1204 1.0288 35 1 4.2359 0.2709 2.3785 36 1 3.4861 1.5527 1.3972 37 1 3.4578 1.6599 3.1739 38 1 3.2098 -2.1639 2.9161 39 1 1.7139 -2.5849 6.8917 40 1 0.7185 0.8671 4.5865 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:55 Heat of formation + Delta-G solvation = -88.716377 kcal Electronic energy + Delta-G solvation = -21994.389726 eV Core-core repulsion = 18444.069308 eV Total energy + Delta-G solvation = -3550.320418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.12804 -49.01856 -39.50481 -37.32561 -34.11132 -32.66489 -30.49474 -30.14205 -29.35476 -27.85613 -25.18589 -24.02651 -22.94132 -21.58929 -20.72788 -19.63683 -17.85202 -17.20837 -16.50317 -16.37217 -16.06292 -15.85130 -15.37352 -15.12779 -15.02355 -14.53105 -14.39810 -13.96829 -13.32916 -12.98022 -12.77170 -12.70727 -12.53142 -12.16575 -12.04579 -11.85089 -11.72544 -11.46336 -11.31445 -11.20066 -10.95842 -10.85099 -10.53316 -10.35489 -9.81356 -9.32304 -9.10716 -8.98907 -8.81743 -8.39254 -8.11146 -6.04437 -4.06502 0.89214 0.91870 3.27552 3.31242 3.35844 3.38415 3.72517 4.17372 4.39610 4.43093 4.63032 4.70428 4.88549 5.06404 5.16794 5.31575 5.32023 5.47449 5.54272 5.67636 5.70232 5.75781 5.82896 5.86985 5.94580 6.02667 6.11262 6.25762 6.29767 6.35726 6.47770 6.52016 6.69447 6.85434 7.02375 7.38466 7.55824 7.73220 7.78528 7.94603 8.38275 8.99788 9.58062 11.06619 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.020245 B = 0.003792 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.699031 B = 7382.650102 C = 8107.771392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.083 3.917 3 H 0.041 0.959 4 C -0.115 4.115 5 C 0.022 3.978 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.680 5.680 15 C 0.119 3.881 16 H 0.089 0.911 17 C -0.179 4.179 18 C 0.000 4.000 19 C -0.140 4.140 20 C 0.130 3.870 21 F -0.132 7.132 22 C -0.202 4.202 23 C 0.126 3.874 24 F -0.136 7.136 25 C -0.163 4.163 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.261 0.739 34 H 0.355 0.645 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.706 2.092 14.558 17.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 H 0.059 0.941 4 C -0.153 4.153 5 C -0.015 4.015 6 C -0.559 4.559 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 N -0.315 5.315 15 C 0.009 3.991 16 H 0.107 0.893 17 C -0.237 4.237 18 C -0.001 4.001 19 C -0.159 4.159 20 C 0.110 3.890 21 F -0.111 7.111 22 C -0.222 4.222 23 C 0.106 3.894 24 F -0.114 7.114 25 C -0.182 4.182 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.178 0.822 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.128 1.840 14.769 18.002 hybrid contribution 1.236 -0.120 -0.774 1.463 sum -8.892 1.720 13.995 16.669 Atomic orbital electron populations 1.21812 0.95673 1.01833 1.00196 1.21616 0.94457 0.96298 0.90215 0.94055 1.21840 0.99714 0.99513 0.94261 1.19114 0.88689 0.96843 0.96869 1.21197 0.91943 1.34408 1.08371 0.92740 1.25007 0.97073 0.95556 0.96673 1.69937 1.02425 1.44054 1.37064 0.86671 0.77595 0.80298 0.83527 1.20278 1.21316 1.20211 1.60712 1.34935 1.31696 1.04131 1.20500 0.98097 0.92477 0.88051 0.89264 1.22493 0.97366 1.01229 1.02661 1.19556 0.92652 0.93365 0.94537 1.21103 1.02511 0.95329 0.96928 1.17296 0.94572 0.82633 0.94461 1.91533 1.79465 1.43664 1.96399 1.20934 1.02655 0.97695 1.00879 1.17177 0.93860 0.93146 0.85170 1.91511 1.74859 1.87936 1.57116 1.21014 1.03059 1.01834 0.92311 0.92941 0.92324 0.93800 0.92416 0.92633 0.96934 0.96723 0.92964 0.82232 0.91627 0.91256 0.92262 0.83625 0.83860 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.40 37.15 0.35 -1.51 16 2 C 0.08 1.31 2.46 -67.72 -0.17 1.15 16 3 H 0.04 0.67 7.11 -51.92 -0.37 0.30 16 4 C -0.12 -2.24 4.74 -26.73 -0.13 -2.36 16 5 C 0.02 0.53 4.80 -27.89 -0.13 0.40 16 6 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 7 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 10 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 N -0.68 -10.18 5.50 -100.95 -0.56 -10.73 16 15 C 0.12 1.50 2.60 -68.86 -0.18 1.32 16 16 H 0.09 1.03 6.97 -51.93 -0.36 0.67 16 17 C -0.18 -2.29 9.13 37.16 0.34 -1.96 16 18 C 0.00 0.00 4.95 -104.64 -0.52 -0.52 16 19 C -0.14 -1.79 9.30 -39.51 -0.37 -2.16 16 20 C 0.13 1.61 7.30 -39.43 -0.29 1.32 16 21 F -0.13 -1.74 17.27 2.25 0.04 -1.70 16 22 C -0.20 -2.24 10.01 -39.45 -0.39 -2.64 16 23 C 0.13 1.41 7.30 -39.43 -0.29 1.12 16 24 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 25 C -0.16 -1.77 9.65 -39.51 -0.38 -2.15 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 28 H 0.04 0.53 7.43 -51.93 -0.39 0.15 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.01 0.36 6.43 -51.93 -0.33 0.03 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.35 5.95 5.55 -39.29 -0.22 5.73 16 35 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 36 H 0.07 0.98 7.43 -51.93 -0.39 0.59 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.15 1.95 7.23 -52.49 -0.38 1.57 16 39 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.14 1.25 8.04 -52.49 -0.42 0.83 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -28.26 337.67 -8.02 -36.28 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.78 Total: 2.66 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -2.57 Total: -21.07 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.18 Total: -36.08 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.08 Total: -3.19 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.26 -8.02 -36.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.441 kcal (2) G-P(sol) polarization free energy of solvation -28.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds