Wall clock time and date at job start Tue Mar 31 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47063 * 2 1 4 4 C 1.53001 * 109.47497 * 240.00065 * 2 1 3 5 5 C 1.52996 * 109.47480 * 174.99634 * 4 2 1 6 6 C 1.50698 * 109.47119 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00212 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00163 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99887 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00235 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47155 * 60.00235 * 10 8 6 12 12 H 1.48508 * 109.47054 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47369 * 299.99840 * 10 8 6 14 14 N 1.46902 * 109.47555 * 119.99551 * 2 1 3 15 15 C 1.46897 * 110.99842 * 275.00447 * 14 2 1 16 16 H 1.08996 * 109.47535 * 35.00054 * 15 14 2 17 17 C 1.53004 * 109.47031 * 274.99604 * 15 14 2 18 18 C 1.50706 * 109.46694 * 155.00017 * 15 14 2 19 19 C 1.38199 * 119.97576 * 39.72251 * 18 15 14 20 20 C 1.38481 * 120.02474 * 179.72437 * 19 18 15 21 21 F 1.35095 * 120.01448 * 180.25044 * 20 19 18 22 22 C 1.38417 * 119.96949 * 0.55319 * 20 19 18 23 23 C 1.38420 * 119.95411 * 359.71867 * 22 20 19 24 24 F 1.35097 * 120.01318 * 180.02562 * 23 22 20 25 25 C 1.38207 * 119.97093 * 219.99552 * 18 15 14 26 26 H 1.09002 * 109.47643 * 60.00617 * 1 2 3 27 27 H 1.09007 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47292 * 299.99666 * 1 2 3 29 29 H 1.09006 * 109.46928 * 294.99941 * 4 2 1 30 30 H 1.09002 * 109.47017 * 54.99292 * 4 2 1 31 31 H 1.09000 * 109.46950 * 299.99860 * 5 4 2 32 32 H 1.09002 * 109.47275 * 59.99816 * 5 4 2 33 33 H 0.96990 * 120.00088 * 179.97438 * 9 8 6 34 34 H 1.00898 * 111.00047 * 151.04734 * 14 2 1 35 35 H 1.08999 * 109.47079 * 300.00119 * 17 15 14 36 36 H 1.08992 * 109.47081 * 60.00488 * 17 15 14 37 37 H 1.09003 * 109.47098 * 180.02562 * 17 15 14 38 38 H 1.07995 * 119.99087 * 359.97438 * 19 18 15 39 39 H 1.08002 * 120.02485 * 179.74641 * 22 20 19 40 40 H 1.08002 * 119.99155 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 6 4.0671 -1.3230 -2.5445 7 1 3.3687 -1.8036 -3.2136 8 6 5.4184 -1.3599 -2.8159 9 7 6.2690 -0.7752 -2.0008 10 14 6.0410 -2.2404 -4.3411 11 1 5.4493 -1.6141 -5.5504 12 1 7.5212 -2.1365 -4.4030 13 1 5.6479 -3.6712 -4.2819 14 7 2.0197 -0.6924 1.1995 15 6 2.0824 0.2228 2.3468 16 1 1.2575 0.9330 2.2907 17 6 3.4111 0.9811 2.3222 18 6 1.9787 -0.5675 3.6259 19 6 2.6284 -1.7817 3.7420 20 6 2.5384 -2.5060 4.9188 21 9 3.1778 -3.6905 5.0339 22 6 1.7880 -2.0188 5.9749 23 6 1.1330 -0.8052 5.8555 24 9 0.4007 -0.3283 6.8857 25 6 1.2292 -0.0800 4.6798 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7517 -1.7715 -1.2056 30 1 1.6053 -0.2618 -2.1370 31 1 3.8531 0.4371 -1.3574 32 1 3.9995 -1.0726 -0.4260 33 1 7.2196 -0.8015 -2.1915 34 1 2.9173 -1.1204 1.0288 35 1 4.2359 0.2709 2.3785 36 1 3.4861 1.5527 1.3972 37 1 3.4578 1.6599 3.1739 38 1 3.2098 -2.1639 2.9161 39 1 1.7139 -2.5849 6.8917 40 1 0.7185 0.8671 4.5865 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:54 Heat of formation + Delta-G solvation = -102.775515 kcal Electronic energy + Delta-G solvation = -21994.999376 eV Core-core repulsion = 18444.069308 eV Total energy + Delta-G solvation = -3550.930068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.02054 -49.99462 -40.49617 -38.53534 -35.66822 -34.36580 -31.66456 -31.32671 -30.66195 -28.96740 -27.00738 -25.07857 -23.88479 -23.25259 -21.82857 -21.00643 -18.88632 -18.41462 -18.15846 -17.37519 -16.99407 -16.90323 -16.55483 -16.31536 -16.25813 -16.21101 -15.36709 -15.08923 -14.53911 -14.37628 -14.26188 -14.16245 -13.65934 -13.39357 -13.14171 -13.05742 -12.94016 -12.84552 -12.77701 -12.50441 -12.36888 -12.32775 -12.01633 -11.79894 -11.56156 -11.28104 -10.91996 -10.52067 -9.93677 -9.74768 -9.31127 -8.18926 -6.28537 -0.02349 -0.00625 1.40318 1.42092 1.49863 2.34370 2.41504 2.79907 3.13452 3.16414 3.44791 3.59286 3.82076 3.97635 4.05795 4.15019 4.23256 4.31837 4.40357 4.48807 4.60338 4.73255 4.79499 4.82877 4.90469 4.97915 5.03010 5.05222 5.08130 5.13678 5.23322 5.26557 5.38681 5.49170 5.57167 5.74835 5.77722 5.87175 6.24395 6.28665 6.42107 6.87893 7.40361 8.91734 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.020245 B = 0.003792 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.699031 B = 7382.650102 C = 8107.771392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.089 3.911 3 H 0.039 0.961 4 C -0.104 4.104 5 C 0.030 3.970 6 C -0.544 4.544 7 H 0.056 0.944 8 C 0.005 3.995 9 N -0.929 5.929 10 Si 0.957 3.043 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.269 1.269 14 N -0.683 5.683 15 C 0.124 3.876 16 H 0.109 0.891 17 C -0.174 4.174 18 C -0.005 4.005 19 C -0.151 4.151 20 C 0.116 3.884 21 F -0.141 7.141 22 C -0.194 4.194 23 C 0.125 3.875 24 F -0.133 7.133 25 C -0.151 4.151 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.056 0.944 31 H -0.013 1.013 32 H 0.000 1.000 33 H 0.262 0.738 34 H 0.341 0.659 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.131 0.869 39 H 0.162 0.838 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.196 2.449 15.060 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.020 4.020 3 H 0.057 0.943 4 C -0.141 4.141 5 C -0.007 4.007 6 C -0.582 4.582 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.569 5.569 10 Si 0.782 3.218 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.194 1.194 14 N -0.316 5.316 15 C 0.014 3.986 16 H 0.127 0.873 17 C -0.233 4.233 18 C -0.006 4.006 19 C -0.170 4.170 20 C 0.097 3.903 21 F -0.119 7.119 22 C -0.214 4.214 23 C 0.105 3.895 24 F -0.112 7.112 25 C -0.170 4.170 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.005 0.995 32 H 0.018 0.982 33 H 0.071 0.929 34 H 0.162 0.838 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.149 0.851 39 H 0.179 0.821 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.643 2.202 15.275 19.332 hybrid contribution 1.704 -0.217 -0.882 1.931 sum -9.939 1.985 14.393 17.603 Atomic orbital electron populations 1.21737 0.93229 1.02045 1.01695 1.21526 0.96207 0.95431 0.88855 0.94345 1.21657 0.96219 0.99777 0.96486 1.18979 0.92011 0.94548 0.95208 1.21681 0.92446 1.34598 1.09466 0.92613 1.25869 0.97394 0.96311 0.99781 1.70063 1.02667 1.45310 1.38861 0.85619 0.77012 0.79296 0.79841 1.19342 1.20955 1.19432 1.60778 1.33985 1.32292 1.04524 1.20541 0.98409 0.92343 0.87349 0.87314 1.22433 0.97079 1.01025 1.02750 1.19452 0.93351 0.93107 0.94717 1.21088 1.02926 0.96101 0.96883 1.17375 0.95414 0.82616 0.94886 1.91508 1.79793 1.44177 1.96458 1.21100 1.01522 0.97749 1.00993 1.17198 0.93837 0.93123 0.85329 1.91523 1.74771 1.87874 1.57021 1.21201 1.01960 1.02433 0.91433 0.91987 0.92727 0.91781 0.92940 0.92523 0.99463 0.98164 0.92918 0.83848 0.93505 0.92918 0.89967 0.85141 0.82052 0.81814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.40 71.98 0.68 -2.53 16 2 C 0.09 2.75 2.46 44.91 0.11 2.86 16 3 H 0.04 1.22 7.11 -2.38 -0.02 1.20 16 4 C -0.10 -4.04 4.74 30.59 0.15 -3.90 16 5 C 0.03 1.48 4.80 29.85 0.14 1.63 16 6 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 7 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 8 C 0.00 0.26 5.46 84.65 0.46 0.72 16 9 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 10 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 14 N -0.68 -20.33 5.50 -473.30 -2.60 -22.94 16 15 C 0.12 2.96 2.60 44.17 0.11 3.07 16 16 H 0.11 2.20 6.97 -2.39 -0.02 2.19 16 17 C -0.17 -4.44 9.13 71.98 0.66 -3.78 16 18 C -0.01 -0.12 4.95 -19.88 -0.10 -0.22 16 19 C -0.15 -3.86 9.30 22.32 0.21 -3.66 16 20 C 0.12 2.84 7.30 22.37 0.16 3.00 16 21 F -0.14 -3.73 17.27 44.97 0.78 -2.95 16 22 C -0.19 -3.98 10.01 22.36 0.22 -3.75 16 23 C 0.12 2.47 7.30 22.37 0.16 2.64 16 24 F -0.13 -2.63 17.27 44.97 0.78 -1.85 16 25 C -0.15 -2.87 9.65 22.32 0.22 -2.66 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.06 1.34 7.43 -2.39 -0.02 1.33 16 29 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H 0.00 0.01 6.43 -2.39 -0.02 -0.01 16 33 H 0.26 14.79 8.31 -92.72 -0.77 14.02 16 34 H 0.34 11.90 5.55 -89.70 -0.50 11.40 16 35 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 36 H 0.05 1.51 7.43 -2.39 -0.02 1.49 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.13 3.69 7.23 -2.91 -0.02 3.67 16 39 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 40 H 0.16 2.28 8.04 -2.91 -0.02 2.26 16 Total: -1.00 -60.74 337.67 5.22 -55.53 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.54 Total: 17.95 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 3.42 Total: -36.71 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -2.32 Total: -77.92 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 1.55 Total: -4.80 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -60.74 5.22 -55.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.250 kcal (2) G-P(sol) polarization free energy of solvation -60.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds