Wall clock time and date at job start Tue Mar 31 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47219 * 2 1 4 4 N 1.46894 * 109.47376 * 120.00617 * 2 1 3 5 5 C 1.46902 * 111.00027 * 273.55656 * 4 2 1 6 6 H 1.09002 * 109.46766 * 346.58314 * 5 4 2 7 7 C 1.52998 * 109.46871 * 106.57745 * 5 4 2 8 8 C 1.53002 * 109.47208 * 226.58080 * 5 4 2 9 9 C 1.52993 * 109.47292 * 64.99999 * 8 5 4 10 10 C 1.50699 * 109.47239 * 179.97438 * 9 8 5 11 11 H 1.07998 * 119.99702 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00006 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99973 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99819 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47071 * 89.99503 * 14 12 10 16 16 H 1.48497 * 109.47367 * 209.99597 * 14 12 10 17 17 H 1.48499 * 109.47228 * 329.99639 * 14 12 10 18 18 C 1.50701 * 109.46661 * 240.00674 * 2 1 3 19 19 C 1.38216 * 119.97459 * 279.72255 * 18 2 1 20 20 C 1.38478 * 120.02371 * 179.72666 * 19 18 2 21 21 F 1.35098 * 120.00767 * 180.25443 * 20 19 18 22 22 C 1.38415 * 119.97204 * 0.54977 * 20 19 18 23 23 C 1.38418 * 119.95347 * 359.72377 * 22 20 19 24 24 F 1.35100 * 120.01069 * 180.02562 * 23 22 20 25 25 C 1.38213 * 119.97866 * 99.99783 * 18 2 1 26 26 H 1.09001 * 109.47798 * 62.68330 * 1 2 3 27 27 H 1.08997 * 109.47338 * 182.68867 * 1 2 3 28 28 H 1.09005 * 109.46856 * 302.68579 * 1 2 3 29 29 H 1.00899 * 111.00181 * 37.51760 * 4 2 1 30 30 H 1.09002 * 109.47417 * 305.26107 * 7 5 4 31 31 H 1.08996 * 109.46937 * 185.25763 * 7 5 4 32 32 H 1.09003 * 109.47035 * 65.26140 * 7 5 4 33 33 H 1.09001 * 109.46342 * 185.00237 * 8 5 4 34 34 H 1.09001 * 109.46846 * 304.99861 * 8 5 4 35 35 H 1.08996 * 109.47491 * 300.00184 * 9 8 5 36 36 H 1.09006 * 109.47168 * 59.99659 * 9 8 5 37 37 H 0.97000 * 119.99679 * 180.02562 * 13 12 10 38 38 H 1.07994 * 119.98397 * 359.97438 * 19 18 2 39 39 H 1.08004 * 120.02166 * 179.74407 * 22 20 19 40 40 H 1.07996 * 119.98453 * 0.02562 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.1150 0.2304 2.3382 6 1 2.0308 1.2570 1.9818 7 6 0.9838 -0.0607 3.3264 8 6 3.4633 0.0416 3.0362 9 6 4.5909 0.4522 2.0871 10 6 5.9189 0.2668 2.7749 11 1 5.9550 -0.1061 3.7878 12 6 7.0877 0.5743 2.1113 13 7 7.0437 1.0289 0.8781 14 14 8.7338 0.3452 2.9641 15 1 9.2392 -1.0268 2.7044 16 1 9.7055 1.3382 2.4396 17 1 8.5654 0.5421 4.4263 18 6 2.0322 -0.7103 -1.2306 19 6 2.0717 -2.0915 -1.2629 20 6 2.5277 -2.7453 -2.3953 21 9 2.5613 -4.0955 -2.4284 22 6 2.9546 -2.0149 -3.4907 23 6 2.9200 -0.6316 -3.4551 24 9 3.3360 0.0825 -4.5239 25 6 2.4583 0.0200 -2.3239 26 1 -0.3635 0.4716 -0.9130 27 1 -0.3634 -1.0265 0.0482 28 1 -0.3633 0.5550 0.8650 29 1 1.4358 -1.4844 1.4233 30 1 0.0268 -0.0176 2.8064 31 1 0.9978 0.6824 4.1237 32 1 1.1210 -1.0542 3.7533 33 1 3.4985 0.6616 3.9320 34 1 3.5852 -1.0054 3.3139 35 1 4.5556 -0.1677 1.1913 36 1 4.4689 1.4992 1.8094 37 1 7.8660 1.2449 0.4112 38 1 1.7430 -2.6610 -0.4062 39 1 3.3143 -2.5240 -4.3727 40 1 2.4316 1.0992 -2.2958 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490119.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:58 Heat of formation + Delta-G solvation = -84.265012 kcal Electronic energy + Delta-G solvation = -22276.010373 eV Core-core repulsion = 18725.882981 eV Total energy + Delta-G solvation = -3550.127392 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.90472 -48.87970 -39.37963 -37.25892 -34.02165 -32.58535 -30.37398 -30.07810 -29.11598 -28.00306 -24.99309 -23.95908 -22.79260 -21.41996 -20.80974 -19.82772 -17.68113 -17.05053 -16.32349 -16.09608 -15.87995 -15.68019 -15.19446 -15.15999 -14.86178 -14.35340 -14.25533 -13.98203 -13.38947 -13.02440 -12.77870 -12.61212 -12.47559 -12.33601 -11.89548 -11.85148 -11.54493 -11.48596 -11.26654 -11.14878 -11.02557 -10.81075 -10.43035 -10.18328 -9.62104 -9.19723 -8.92006 -8.81288 -8.62068 -8.21992 -7.99189 -5.87357 -3.88144 1.08918 1.11355 3.38258 3.44080 3.44359 3.47210 3.92520 4.26009 4.53991 4.55376 4.66730 4.89800 4.98421 5.08079 5.18840 5.30007 5.36758 5.44067 5.48067 5.48501 5.63300 5.80900 5.87277 5.90232 5.98462 6.03217 6.09996 6.11378 6.26210 6.40275 6.43421 6.67730 6.87311 6.89936 7.31304 7.42340 7.71853 7.84781 8.08195 8.22982 8.59040 9.20448 9.74489 11.23611 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.011702 B = 0.005436 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.221593 B = 5149.641869 C = 6436.043120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.122 3.878 3 H 0.096 0.904 4 N -0.666 5.666 5 C 0.085 3.915 6 H 0.065 0.935 7 C -0.175 4.175 8 C -0.098 4.098 9 C 0.030 3.970 10 C -0.517 4.517 11 H 0.050 0.950 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.886 3.114 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.000 4.000 19 C -0.139 4.139 20 C 0.126 3.874 21 F -0.136 7.136 22 C -0.200 4.200 23 C 0.130 3.870 24 F -0.134 7.134 25 C -0.154 4.154 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.335 0.665 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.031 0.969 36 H 0.004 0.996 37 H 0.257 0.743 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.728 -3.735 -5.708 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.012 3.988 3 H 0.114 0.886 4 N -0.296 5.296 5 C -0.024 4.024 6 H 0.084 0.916 7 C -0.234 4.234 8 C -0.136 4.136 9 C -0.007 4.007 10 C -0.556 4.556 11 H 0.069 0.931 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.714 3.286 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.200 1.200 18 C -0.001 4.001 19 C -0.158 4.158 20 C 0.106 3.894 21 F -0.114 7.114 22 C -0.220 4.220 23 C 0.111 3.889 24 F -0.113 7.113 25 C -0.173 4.173 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.154 0.846 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.022 0.978 37 H 0.067 0.933 38 H 0.158 0.842 39 H 0.161 0.839 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.925 -3.627 -6.043 16.506 hybrid contribution 0.335 -0.146 0.386 0.532 sum -14.590 -3.773 -5.656 16.097 Atomic orbital electron populations 1.22576 0.96206 1.02333 1.02538 1.20602 0.92259 0.97849 0.88109 0.88606 1.60509 1.55622 1.09976 1.03458 1.21813 0.95956 0.95109 0.89515 0.91632 1.22491 0.98217 1.02244 1.00401 1.21651 0.93408 1.00286 0.98232 1.18984 0.90812 0.95936 0.95002 1.21328 0.91729 1.42839 0.99687 0.93143 1.24988 0.98918 0.95598 0.94887 1.69968 1.27288 1.45185 1.10943 0.86702 0.84330 0.77807 0.79774 1.20800 1.21375 1.20040 1.19451 0.94309 0.92421 0.93941 1.20910 1.02994 0.94770 0.97140 1.17243 1.00491 0.76862 0.94765 1.91507 1.94249 1.28792 1.96858 1.20912 1.07493 0.92988 1.00562 1.17172 0.98567 0.88603 0.84602 1.91515 1.87800 1.78055 1.53923 1.21040 1.02462 1.01418 0.92405 0.91955 0.92248 0.91882 0.84569 0.93473 0.92220 0.92416 0.93717 0.93242 0.95043 0.97766 0.93285 0.84219 0.83930 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 9.08 37.16 0.34 -1.37 16 2 C 0.12 1.57 2.74 -68.87 -0.19 1.38 16 3 H 0.10 1.34 7.19 -51.93 -0.37 0.96 16 4 N -0.67 -9.61 5.00 -100.96 -0.51 -10.11 16 5 C 0.09 1.31 2.68 -67.71 -0.18 1.12 16 6 H 0.07 1.03 7.14 -51.93 -0.37 0.66 16 7 C -0.17 -2.10 9.06 37.16 0.34 -1.77 16 8 C -0.10 -1.96 4.83 -26.73 -0.13 -2.09 16 9 C 0.03 0.77 4.86 -27.89 -0.14 0.63 16 10 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 11 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 14 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 15 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 C 0.00 0.00 4.96 -104.64 -0.52 -0.52 16 19 C -0.14 -1.89 9.30 -39.50 -0.37 -2.26 16 20 C 0.13 1.75 7.30 -39.43 -0.29 1.46 16 21 F -0.14 -1.90 17.27 2.25 0.04 -1.86 16 22 C -0.20 -2.70 10.01 -39.45 -0.39 -3.10 16 23 C 0.13 1.85 7.30 -39.43 -0.29 1.56 16 24 F -0.13 -1.95 17.27 2.25 0.04 -1.91 16 25 C -0.15 -2.15 9.65 -39.51 -0.38 -2.53 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 28 H 0.06 0.58 6.90 -51.93 -0.36 0.22 16 29 H 0.34 4.13 7.29 -39.29 -0.29 3.84 16 30 H 0.05 0.48 6.81 -51.93 -0.35 0.13 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.03 0.88 7.75 -51.93 -0.40 0.47 16 36 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.14 1.71 7.28 -52.49 -0.38 1.33 16 39 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 40 H 0.14 1.78 8.03 -52.49 -0.42 1.35 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -31.16 339.45 -8.08 -39.24 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.87 Total: 0.21 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -2.61 Total: -21.17 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.23 Total: -36.82 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.08 Total: -3.77 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.16 -8.08 -39.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490119.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.028 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds