Wall clock time and date at job start Tue Mar 31 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47309 * 2 1 4 4 C 1.53004 * 109.47630 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47080 * 179.70752 * 4 3 2 6 6 C 1.46904 * 111.00294 * 288.19072 * 5 4 3 7 7 C 1.50697 * 109.47305 * 160.36059 * 6 5 4 8 8 H 1.07997 * 119.99692 * 4.89932 * 7 6 5 9 9 C 1.37872 * 119.99985 * 184.89401 * 7 6 5 10 10 N 1.31516 * 119.99812 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00278 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47075 * 89.99586 * 11 9 7 13 13 H 1.48492 * 109.47397 * 209.99974 * 11 9 7 14 14 H 1.48504 * 109.46928 * 330.00208 * 11 9 7 15 15 C 1.46902 * 110.99501 * 164.24105 * 5 4 3 16 16 C 1.50700 * 109.46974 * 293.95094 * 15 5 4 17 17 C 1.38261 * 119.96675 * 270.02314 * 16 15 5 18 18 C 1.38206 * 120.07283 * 179.97438 * 17 16 15 19 19 C 1.38409 * 120.00212 * 0.02562 * 18 17 16 20 20 F 1.35095 * 120.03857 * 180.27296 * 19 18 17 21 21 C 1.38656 * 119.92532 * 359.97438 * 19 18 17 22 22 F 1.35104 * 120.03030 * 180.02562 * 21 19 18 23 23 C 1.38210 * 119.96334 * 90.00439 * 16 15 5 24 24 H 1.09005 * 109.46479 * 299.99415 * 1 2 3 25 25 H 1.08994 * 109.47782 * 59.99015 * 1 2 3 26 26 H 1.09001 * 109.46869 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46479 * 240.00585 * 2 1 3 28 28 H 1.08994 * 109.47782 * 120.00985 * 2 1 3 29 29 H 1.09004 * 109.47178 * 60.00376 * 3 2 1 30 30 H 1.09004 * 109.47612 * 300.01244 * 3 2 1 31 31 H 1.09000 * 109.46614 * 59.70854 * 4 3 2 32 32 H 1.08996 * 109.46777 * 299.70866 * 4 3 2 33 33 H 1.09004 * 109.46844 * 280.36511 * 6 5 4 34 34 H 1.08997 * 109.47130 * 40.35601 * 6 5 4 35 35 H 0.97005 * 119.99366 * 180.02562 * 10 9 7 36 36 H 1.09003 * 109.47115 * 173.95679 * 15 5 4 37 37 H 1.08997 * 109.47829 * 53.95443 * 15 5 4 38 38 H 1.08007 * 119.96120 * 359.97438 * 17 16 15 39 39 H 1.08003 * 120.00195 * 180.02562 * 18 17 16 40 40 H 1.07992 * 120.00525 * 0.04093 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8275 -0.0077 6 6 3.8309 3.4601 -1.3137 7 6 3.8827 4.9585 -1.1620 8 1 4.1450 5.3961 -0.2101 9 6 3.5953 5.7707 -2.2383 10 7 3.6410 7.0784 -2.1060 11 14 3.1409 5.0139 -3.8846 12 1 1.6698 4.8232 -3.9526 13 1 3.5742 5.9167 -4.9810 14 1 3.8175 3.6998 -4.0288 15 6 5.4797 2.8857 0.3639 16 6 5.6413 2.4556 1.7991 17 6 5.5753 3.3935 2.8128 18 6 5.7227 3.0014 4.1298 19 6 5.9373 1.6686 4.4353 20 9 6.0760 1.2838 5.7228 21 6 6.0035 0.7280 3.4187 22 9 6.2123 -0.5736 3.7145 23 6 5.8550 1.1238 2.1008 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 1.6767 1.9563 0.8900 30 1 1.6765 1.9564 -0.8899 31 1 3.9329 0.9243 -0.8883 32 1 3.9337 0.9331 0.8917 33 1 4.6026 3.1388 -2.0132 34 1 2.8520 3.1669 -1.6930 35 1 3.4384 7.6498 -2.8633 36 1 5.8442 3.9063 0.2472 37 1 6.0519 2.2195 -0.2817 38 1 5.4083 4.4338 2.5751 39 1 5.6705 3.7350 4.9208 40 1 5.9068 0.3921 1.3082 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204224049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:56 Heat of formation + Delta-G solvation = -75.662035 kcal Electronic energy + Delta-G solvation = -22233.208903 eV Core-core repulsion = 18683.454564 eV Total energy + Delta-G solvation = -3549.754339 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.42251 -48.50203 -39.32220 -37.09053 -34.43844 -32.62209 -31.23680 -30.69476 -29.00603 -27.36886 -24.94129 -23.25940 -22.70691 -21.72856 -20.85353 -19.83452 -17.84642 -17.08710 -16.97623 -16.75009 -16.27554 -15.43472 -14.93305 -14.86218 -14.65464 -14.46265 -14.29297 -14.00020 -13.87871 -13.45244 -12.88107 -12.80940 -12.59596 -12.41507 -12.11845 -11.84166 -11.55355 -11.41573 -11.16731 -11.12933 -10.89627 -10.66852 -10.51733 -10.40651 -10.03982 -9.90257 -9.38594 -8.99593 -8.61771 -8.53263 -7.49208 -6.10252 -4.07344 0.98414 1.04951 3.23979 3.32132 3.33354 3.41623 3.82188 4.34762 4.37204 4.56841 4.67411 4.82793 5.07470 5.15241 5.19812 5.22074 5.28020 5.35688 5.57723 5.67857 5.77185 5.79986 5.89547 5.93692 5.97282 6.03748 6.05159 6.14214 6.16513 6.27404 6.30184 6.53529 6.57738 6.69891 6.76918 6.81844 6.85898 7.55893 7.80191 7.91240 8.59191 8.98245 9.51772 11.02807 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.005036 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.531961 B = 5558.809845 C = 6866.557407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.114 4.114 4 C 0.045 3.955 5 N -0.520 5.520 6 C 0.161 3.839 7 C -0.508 4.508 8 H 0.081 0.919 9 C 0.070 3.930 10 N -0.899 5.899 11 Si 0.872 3.128 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.095 3.905 16 C -0.042 4.042 17 C -0.074 4.074 18 C -0.126 4.126 19 C 0.055 3.945 20 F -0.136 7.136 21 C 0.061 3.939 22 F -0.135 7.135 23 C -0.126 4.126 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.023 0.977 32 H 0.066 0.934 33 H -0.011 1.011 34 H 0.029 0.971 35 H 0.264 0.736 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.065 -12.367 8.227 14.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.152 4.152 4 C -0.083 4.083 5 N -0.243 5.243 6 C 0.036 3.964 7 C -0.546 4.546 8 H 0.099 0.901 9 C -0.132 4.132 10 N -0.538 5.538 11 Si 0.699 3.301 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.033 4.033 16 C -0.043 4.043 17 C -0.093 4.093 18 C -0.145 4.145 19 C 0.035 3.965 20 F -0.114 7.114 21 C 0.041 3.959 22 F -0.113 7.113 23 C -0.145 4.145 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.007 0.993 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.054 0.946 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.786 -11.987 8.511 14.809 hybrid contribution 0.180 -1.087 -1.255 1.670 sum 1.966 -13.074 7.256 15.081 Atomic orbital electron populations 1.21752 0.96076 1.00967 1.01989 1.21503 0.95732 0.97497 1.01373 1.21588 0.94968 0.95472 1.03198 1.22241 0.95765 0.90681 0.99605 1.61989 1.14559 1.14615 1.33164 1.20245 0.95552 0.96048 0.84589 1.21002 1.46687 0.88112 0.98785 0.90101 1.24879 0.95164 0.94698 0.98465 1.69886 1.49579 1.02936 1.31389 0.86922 0.79278 0.79490 0.84423 1.20141 1.21200 1.19359 1.21056 0.90571 1.02779 0.88856 1.19993 0.95385 0.91565 0.97339 1.21144 0.96407 1.01262 0.90493 1.21108 1.01618 0.93253 0.98513 1.17670 1.07573 0.93322 0.77980 1.91494 1.93630 1.91771 1.34527 1.17617 1.06844 0.78092 0.93316 1.91500 1.92661 1.33140 1.94049 1.21024 1.02266 0.97347 0.93884 0.92723 0.92734 0.93265 0.92529 0.92437 0.91256 0.91568 0.95886 0.91552 0.99314 0.95270 0.92649 0.87910 0.94643 0.83512 0.83846 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.54 5.93 -26.73 -0.16 -1.70 16 3 C -0.11 -1.77 5.28 -26.73 -0.14 -1.91 16 4 C 0.05 0.73 4.80 -3.82 -0.02 0.71 16 5 N -0.52 -9.83 4.37 -237.52 -1.04 -10.87 16 6 C 0.16 3.63 3.66 -4.98 -0.02 3.62 16 7 C -0.51 -13.51 9.17 -34.44 -0.32 -13.83 16 8 H 0.08 2.32 7.89 -52.49 -0.41 1.91 16 9 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 10 N -0.90 -26.51 13.96 55.43 0.77 -25.74 16 11 Si 0.87 20.71 27.37 -169.99 -4.65 16.05 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.15 6.69 56.52 0.38 -5.78 16 15 C 0.09 1.58 4.94 -4.98 -0.02 1.55 16 16 C -0.04 -0.60 4.94 -104.62 -0.52 -1.11 16 17 C -0.07 -0.99 9.70 -39.58 -0.38 -1.38 16 18 C -0.13 -1.54 10.02 -39.53 -0.40 -1.93 16 19 C 0.05 0.74 7.31 -39.36 -0.29 0.45 16 20 F -0.14 -1.88 17.18 2.25 0.04 -1.84 16 21 C 0.06 0.84 7.31 -39.36 -0.29 0.55 16 22 F -0.13 -1.91 17.18 2.25 0.04 -1.87 16 23 C -0.13 -1.66 7.82 -39.53 -0.31 -1.97 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.13 6.52 -51.93 -0.34 0.79 16 31 H 0.02 0.36 8.05 -51.93 -0.42 -0.05 16 32 H 0.07 0.97 5.14 -51.93 -0.27 0.70 16 33 H -0.01 -0.25 7.40 -51.93 -0.38 -0.63 16 34 H 0.03 0.67 5.39 -51.93 -0.28 0.39 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.10 1.86 7.26 -51.93 -0.38 1.49 16 37 H 0.04 0.55 8.06 -51.93 -0.42 0.14 16 38 H 0.15 1.93 8.06 -52.48 -0.42 1.51 16 39 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.14 1.66 7.73 -52.49 -0.41 1.25 16 LS Contribution 333.95 15.07 5.03 5.03 Total: -1.00 -28.56 333.95 -8.24 -36.80 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.84 Total: -1.09 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -2.59 Total: -16.48 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.27 Total: -36.60 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.08 Total: -3.71 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.65 Total: 16.05 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.56 -8.24 -36.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204224049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.867 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds