Wall clock time and date at job start Tue Mar 31 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99809 * 2 1 4 4 C 1.38345 * 119.99908 * 179.97438 * 2 1 3 5 5 N 1.32533 * 119.07577 * 359.97438 * 4 2 1 6 6 C 1.32125 * 120.86546 * 179.97438 * 5 4 2 7 7 C 1.39722 * 119.04744 * 0.02562 * 6 5 4 8 8 C 1.48376 * 120.83936 * 180.02562 * 7 6 5 9 9 C 1.39349 * 120.11836 * 359.72065 * 8 7 6 10 10 C 1.38021 * 119.87427 * 179.77023 * 9 8 7 11 11 C 1.38325 * 120.12037 * 0.51258 * 10 9 8 12 12 C 1.50696 * 119.87857 * 179.72320 * 11 10 9 13 13 C 1.50701 * 109.47191 * 270.02218 * 12 11 10 14 14 H 1.07999 * 119.99684 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00233 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99875 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99983 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47133 * 89.99856 * 17 15 13 19 19 H 1.48500 * 109.47098 * 210.00279 * 17 15 13 20 20 H 1.48500 * 109.46871 * 329.99914 * 17 15 13 21 21 C 1.38328 * 120.24454 * 359.73871 * 11 10 9 22 22 C 1.38014 * 120.12274 * 0.02562 * 21 11 10 23 23 C 1.39717 * 118.32144 * 0.27389 * 7 6 5 24 24 N 1.32131 * 119.04800 * 359.44735 * 23 7 6 25 25 H 1.08999 * 109.47312 * 270.00297 * 1 2 3 26 26 H 1.09001 * 109.47102 * 30.00565 * 1 2 3 27 27 H 1.09006 * 109.47120 * 149.99939 * 1 2 3 28 28 H 1.08990 * 109.46977 * 239.99681 * 3 2 1 29 29 H 1.08995 * 109.47280 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47235 * 119.99602 * 3 2 1 31 31 H 1.08003 * 120.47305 * 180.02562 * 6 5 4 32 32 H 1.08000 * 120.06903 * 0.02562 * 9 8 7 33 33 H 1.07998 * 119.93850 * 180.25757 * 10 9 8 34 34 H 1.09003 * 109.47159 * 30.01994 * 12 11 10 35 35 H 1.08997 * 109.47406 * 150.02064 * 12 11 10 36 36 H 0.97001 * 120.00199 * 179.97438 * 16 15 13 37 37 H 1.08004 * 119.93564 * 180.02562 * 21 11 10 38 38 H 1.08002 * 120.06078 * 179.97438 * 22 21 11 39 39 H 1.08007 * 120.47529 * 179.72894 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1567 -1.1981 0.0005 5 7 1.4756 -2.3350 0.0016 6 6 2.1001 -3.4993 0.0016 7 6 3.4972 -3.5198 0.0011 8 6 4.2391 -4.8047 0.0005 9 6 3.5449 -6.0130 0.0064 10 6 4.2401 -7.2053 0.0010 11 6 5.6233 -7.2023 0.0006 12 6 6.3769 -8.5074 0.0010 13 6 6.6281 -8.9419 1.4220 14 1 6.2775 -8.3336 2.2426 15 6 7.3054 -10.1160 1.6744 16 7 7.5250 -10.4949 2.9144 17 14 7.9112 -11.1685 0.2550 18 1 9.2845 -10.7479 -0.1222 19 1 7.9260 -12.5949 0.6676 20 1 7.0044 -10.9993 -0.9088 21 6 6.3175 -6.0058 0.0000 22 6 5.6325 -4.8077 0.0005 23 6 4.1780 -2.2997 0.0064 24 7 3.4819 -1.1766 0.0006 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 2.8241 1.3265 -0.8899 29 1 1.4892 2.0972 -0.0005 30 1 2.8241 1.3266 0.8900 31 1 1.5388 -4.4220 0.0020 32 1 2.4649 -6.0165 0.0109 33 1 3.7031 -8.1423 0.0014 34 1 5.7878 -9.2673 -0.5125 35 1 7.3292 -8.3772 -0.5128 36 1 8.0012 -11.3211 3.0921 37 1 7.3975 -6.0093 -0.0008 38 1 6.1755 -3.8741 0.0004 39 1 5.2577 -2.2749 0.0106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205005265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:56 Heat of formation + Delta-G solvation = 82.843449 kcal Electronic energy + Delta-G solvation = -20442.162109 eV Core-core repulsion = 17349.970269 eV Total energy + Delta-G solvation = -3092.191839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03835 -38.76382 -36.85165 -33.90666 -33.79626 -32.35150 -30.51392 -30.27918 -28.46293 -27.50753 -25.43455 -24.63079 -23.04730 -21.76366 -21.73231 -20.08120 -17.94662 -17.46058 -16.80388 -16.48181 -15.84868 -15.20939 -14.79464 -14.52610 -14.22441 -14.05392 -14.00041 -13.71518 -13.24485 -12.86397 -12.74493 -12.60096 -12.49631 -12.45816 -12.19390 -11.72755 -11.61494 -10.95874 -10.84127 -10.74273 -10.52999 -10.34022 -9.99029 -9.94119 -9.40738 -9.10178 -8.61542 -8.47140 -8.44001 -7.28864 -6.10244 -4.09878 0.79122 1.14100 1.93310 2.23471 2.51196 3.26473 3.34620 3.36838 3.86214 4.09423 4.38700 4.44357 4.45078 4.64040 4.84657 4.94813 4.97217 5.02088 5.14820 5.21729 5.35716 5.39360 5.49512 5.53874 5.56138 5.68406 5.79646 6.01967 6.14605 6.18290 6.45741 6.49669 6.59883 6.78245 6.89334 6.94506 6.97443 6.99141 7.29631 7.51747 7.52945 7.67158 8.19968 8.45930 8.94948 9.49654 11.02604 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.047687 B = 0.002803 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.023077 B = 9988.384833 C =10159.806807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.598 5.598 3 C 0.111 3.889 4 C 0.547 3.453 5 N -0.564 5.564 6 C 0.192 3.808 7 C -0.186 4.186 8 C -0.063 4.063 9 C -0.111 4.111 10 C -0.117 4.117 11 C -0.023 4.023 12 C 0.012 3.988 13 C -0.514 4.514 14 H 0.074 0.926 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.117 4.117 22 C -0.112 4.112 23 C 0.192 3.808 24 N -0.563 5.563 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.169 0.831 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.029 0.971 35 H 0.024 0.976 36 H 0.265 0.735 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.525 19.777 -8.051 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.316 5.316 3 C -0.032 4.032 4 C 0.192 3.808 5 N -0.285 5.285 6 C 0.024 3.976 7 C -0.193 4.193 8 C -0.065 4.065 9 C -0.130 4.130 10 C -0.135 4.135 11 C -0.023 4.023 12 C -0.025 4.025 13 C -0.552 4.552 14 H 0.092 0.908 15 C -0.133 4.133 16 N -0.537 5.537 17 Si 0.705 3.295 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.189 1.189 21 C -0.135 4.135 22 C -0.130 4.130 23 C 0.024 3.976 24 N -0.284 5.284 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.186 0.814 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.081 20.737 -7.939 25.278 hybrid contribution 0.892 -1.478 -0.449 1.783 sum -11.189 19.259 -8.388 23.801 Atomic orbital electron populations 1.21622 0.77657 1.03007 1.01585 1.45783 1.05682 1.02001 1.78122 1.21530 0.96413 0.82963 1.02338 1.19243 0.85417 0.86233 0.89903 1.67822 1.40859 0.97817 1.22010 1.23061 0.91117 0.95016 0.88356 1.20242 0.95176 0.95006 1.08900 1.18153 0.92816 0.90474 1.05034 1.21010 0.98934 0.91821 1.01198 1.20998 0.94177 0.97473 1.00862 1.20390 0.93611 0.96381 0.91911 1.18851 0.94913 0.90078 0.98683 1.20914 1.36714 1.07203 0.90348 0.90786 1.25003 0.95419 0.97318 0.95514 1.69896 1.41534 1.23568 1.18729 0.86803 0.79718 0.79800 0.83184 1.20148 1.21241 1.18911 1.21001 1.00047 0.91609 1.00880 1.21007 0.92881 0.97878 1.01202 1.23067 1.00243 0.85902 0.88344 1.67854 1.06685 1.31953 1.21895 0.93186 0.91507 0.90166 0.92301 0.90899 0.92261 0.81404 0.86689 0.86008 0.95306 0.95746 0.92560 0.86010 0.86692 0.81414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.83 10.40 59.85 0.62 1.45 16 2 N -0.60 -6.39 3.37 -191.89 -0.65 -7.04 16 3 C 0.11 0.89 10.13 59.85 0.61 1.49 16 4 C 0.55 7.38 8.17 -322.79 -2.64 4.74 16 5 N -0.56 -7.66 9.08 -13.68 -0.12 -7.78 16 6 C 0.19 2.48 10.69 -16.87 -0.18 2.30 16 7 C -0.19 -2.53 5.91 -104.62 -0.62 -3.14 16 8 C -0.06 -0.95 5.88 -104.90 -0.62 -1.57 16 9 C -0.11 -1.71 9.45 -39.25 -0.37 -2.08 16 10 C -0.12 -2.11 9.68 -39.63 -0.38 -2.49 16 11 C -0.02 -0.46 5.07 -104.56 -0.53 -0.99 16 12 C 0.01 0.27 4.17 -29.04 -0.12 0.15 16 13 C -0.51 -14.29 9.65 -34.44 -0.33 -14.63 16 14 H 0.07 2.26 7.98 -52.49 -0.42 1.85 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 17 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 21 C -0.12 -2.11 9.68 -39.63 -0.38 -2.49 16 22 C -0.11 -1.71 9.45 -39.25 -0.37 -2.08 16 23 C 0.19 2.49 10.69 -16.87 -0.18 2.31 16 24 N -0.56 -7.69 9.56 -13.67 -0.13 -7.82 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.36 7.92 -51.93 -0.41 -0.05 16 27 H 0.08 0.72 7.33 -51.93 -0.38 0.34 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.37 7.79 -51.93 -0.40 -0.03 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.17 1.77 6.33 -52.48 -0.33 1.44 16 32 H 0.12 1.42 6.29 -52.49 -0.33 1.09 16 33 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 34 H 0.03 0.66 7.14 -51.93 -0.37 0.29 16 35 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.12 2.09 8.06 -52.48 -0.42 1.67 16 38 H 0.12 1.42 6.29 -52.49 -0.33 1.09 16 39 H 0.17 1.78 6.33 -52.48 -0.33 1.45 16 LS Contribution 328.47 15.07 4.95 4.95 Total: -1.00 -32.51 328.47 -10.43 -42.93 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -4.98 Total: 0.03 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -5.60 Total: -15.16 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.13 Total: -49.11 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.51 -10.43 -42.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205005265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.776 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds