Wall clock time and date at job start Tue Mar 31 2020 05:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38393 * 120.00382 * 2 1 4 4 N 1.32126 * 119.99337 * 179.97438 * 3 2 1 5 5 C 1.32153 * 120.00558 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00151 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46848 * 276.44623 * 6 5 4 8 8 C 1.36935 * 120.00222 * 90.61715 * 7 6 5 9 9 H 1.08002 * 120.00210 * 169.87690 * 8 7 6 10 10 C 1.38809 * 120.00045 * 349.86923 * 8 7 6 11 11 N 1.31620 * 120.00142 * 3.36967 * 10 8 7 12 12 Si 1.86799 * 120.00285 * 183.37265 * 10 8 7 13 13 H 1.48505 * 109.46794 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47400 * 119.99903 * 12 10 8 15 15 H 1.48495 * 109.47257 * 239.99875 * 12 10 8 16 16 C 1.46498 * 119.99878 * 270.61103 * 7 6 5 17 17 C 1.50697 * 109.47069 * 96.24959 * 16 7 6 18 18 C 1.38230 * 120.00445 * 83.47051 * 17 16 7 19 19 C 1.38238 * 120.00298 * 179.97438 * 18 17 16 20 20 C 1.38231 * 120.00085 * 0.09155 * 19 18 17 21 21 C 1.38236 * 119.99844 * 359.85958 * 20 19 18 22 22 C 1.38233 * 120.00059 * 0.09687 * 21 20 19 23 23 C 1.38342 * 119.99709 * 0.25383 * 5 4 3 24 24 N 1.32125 * 119.99712 * 179.97438 * 2 1 3 25 25 H 1.08994 * 109.47270 * 89.99532 * 1 2 3 26 26 H 1.08996 * 109.47446 * 210.00295 * 1 2 3 27 27 H 1.09005 * 109.46469 * 329.99505 * 1 2 3 28 28 H 1.07998 * 119.99903 * 0.02562 * 3 2 1 29 29 H 1.08992 * 109.47320 * 156.44413 * 6 5 4 30 30 H 1.09004 * 109.47321 * 36.44096 * 6 5 4 31 31 H 0.97001 * 120.00304 * 179.97438 * 11 10 8 32 32 H 1.09001 * 109.47033 * 336.24790 * 16 7 6 33 33 H 1.08999 * 109.47322 * 216.24650 * 16 7 6 34 34 H 1.08005 * 119.99928 * 359.69753 * 18 17 16 35 35 H 1.08001 * 119.99870 * 179.97438 * 19 18 17 36 36 H 1.07998 * 119.99851 * 179.97438 * 20 19 18 37 37 H 1.07997 * 119.99884 * 180.02562 * 21 20 19 38 38 H 1.08002 * 120.00428 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.99354 * 179.72713 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5203 1.1982 0.0005 5 6 4.1810 0.0537 0.0005 6 6 5.6879 0.0535 0.0005 7 7 6.1762 0.2086 -1.3720 8 6 6.4166 1.4588 -1.8761 9 1 6.9274 1.5711 -2.8211 10 6 6.0036 2.5820 -1.1728 11 7 5.4405 2.4480 0.0093 12 14 6.2469 4.2837 -1.9039 13 1 6.8971 4.1628 -3.2335 14 1 4.9285 4.9499 -2.0569 15 1 7.1078 5.0911 -1.0028 16 6 6.4074 -0.9741 -2.2051 17 6 5.2006 -1.2206 -3.0734 18 6 5.0551 -0.5359 -4.2653 19 6 3.9483 -0.7624 -5.0619 20 6 2.9861 -1.6724 -4.6658 21 6 3.1322 -2.3580 -3.4743 22 6 4.2393 -2.1321 -2.6781 23 6 3.4891 -1.1443 -0.0053 24 7 2.1675 -1.1443 0.0005 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5140 28 1 1.6591 2.1338 0.0004 29 1 6.0511 -0.8885 0.4112 30 1 6.0514 0.8802 0.6110 31 1 5.1522 3.2329 0.5010 32 1 6.5787 -1.8406 -1.5664 33 1 7.2810 -0.8091 -2.8357 34 1 5.8038 0.1795 -4.5720 35 1 3.8344 -0.2271 -5.9930 36 1 2.1213 -1.8491 -5.2880 37 1 2.3806 -3.0693 -3.1650 38 1 4.3533 -2.6674 -1.7470 39 1 4.0291 -2.0796 -0.0098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207079166.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:44 Heat of formation + Delta-G solvation = 128.337880 kcal Electronic energy + Delta-G solvation = -22818.106734 eV Core-core repulsion = 19727.887681 eV Total energy + Delta-G solvation = -3090.219053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.08491 -38.59620 -35.91887 -33.35456 -32.15653 -31.95067 -30.27478 -30.02395 -28.29833 -25.51396 -24.93926 -23.64366 -22.26737 -21.91745 -20.76528 -20.01338 -17.10278 -16.64610 -16.24362 -15.27458 -15.05671 -14.87850 -14.41490 -14.36016 -14.15582 -13.50332 -13.08697 -13.03166 -12.80108 -12.24539 -12.18515 -12.16941 -11.95490 -11.63435 -11.29589 -11.00586 -10.90366 -10.59771 -10.41286 -10.33899 -10.21934 -10.08339 -9.79263 -9.74343 -8.63084 -8.37115 -8.20181 -7.95767 -7.90190 -6.77742 -5.46890 -3.06324 1.73574 2.00966 2.01867 2.28008 3.40247 3.47404 3.48418 4.34470 4.56337 4.72888 4.81778 5.25474 5.35986 5.42961 5.44480 5.52667 5.56963 5.63672 5.71157 5.76658 5.83052 5.87778 6.01630 6.07557 6.13902 6.22159 6.27298 6.37281 6.48760 6.58727 6.65473 6.68022 6.82842 7.05529 7.08646 7.36450 7.40441 7.63782 7.73535 7.79865 8.32763 8.45124 9.11387 9.26127 9.84737 10.25281 11.32757 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.012188 B = 0.009400 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.778971 B = 2978.080021 C = 4110.245133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.034 3.966 3 C 0.026 3.974 4 N -0.332 5.332 5 C 0.108 3.892 6 C 0.188 3.812 7 N -0.574 5.574 8 C -0.268 4.268 9 H 0.073 0.927 10 C 0.010 3.990 11 N -0.852 5.852 12 Si 0.902 3.098 13 H -0.283 1.283 14 H -0.292 1.292 15 H -0.292 1.292 16 C 0.176 3.824 17 C -0.083 4.083 18 C -0.101 4.101 19 C -0.127 4.127 20 C -0.142 4.142 21 C -0.121 4.121 22 C -0.115 4.115 23 C 0.031 3.969 24 N -0.452 5.452 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.143 0.857 29 H 0.020 0.980 30 H 0.151 0.849 31 H 0.253 0.747 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 -6.719 -1.919 8.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.135 4.135 4 N -0.045 5.045 5 C -0.035 4.035 6 C 0.061 3.939 7 N -0.292 5.292 8 C -0.396 4.396 9 H 0.091 0.909 10 C -0.190 4.190 11 N -0.495 5.495 12 Si 0.733 3.267 13 H -0.209 1.209 14 H -0.219 1.219 15 H -0.219 1.219 16 C 0.049 3.951 17 C -0.086 4.086 18 C -0.120 4.120 19 C -0.145 4.145 20 C -0.160 4.160 21 C -0.139 4.139 22 C -0.134 4.134 23 C -0.131 4.131 24 N -0.168 5.168 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.160 0.840 29 H 0.038 0.962 30 H 0.168 0.832 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.605 -6.514 -1.762 8.170 hybrid contribution -0.574 0.994 -0.699 1.344 sum -5.179 -5.520 -2.462 7.959 Atomic orbital electron populations 1.20489 0.89655 1.02419 1.02125 1.21991 0.97198 0.90746 1.00794 1.23927 0.93328 0.97603 0.98626 1.69425 1.03968 1.28365 1.02768 1.23485 1.01368 0.87544 0.91123 1.20750 0.84611 1.00897 0.87662 1.44231 1.74235 1.01641 1.09086 1.19144 1.33058 0.82182 1.05223 0.90923 1.24848 0.99056 0.97694 0.97432 1.69688 1.41136 1.27037 1.11591 0.86229 0.77041 0.85135 0.78276 1.20851 1.21930 1.21867 1.20028 0.92633 0.90331 0.92101 1.21118 0.99393 0.93793 0.94332 1.20974 0.97877 0.98654 0.94484 1.21038 0.95064 0.98694 0.99733 1.20898 0.99065 0.98677 0.97385 1.20956 0.97735 1.00145 0.95072 1.21016 0.94552 0.98929 0.98890 1.23484 0.90497 0.99429 0.99672 1.68023 1.09151 1.29290 1.10315 0.91416 0.91383 0.91386 0.83986 0.96235 0.83246 0.93445 0.93032 0.92684 0.86590 0.87256 0.87441 0.87294 0.87038 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 10.19 36.00 0.37 -0.88 16 2 C 0.03 0.63 6.79 -82.41 -0.56 0.07 16 3 C 0.03 0.54 10.88 -17.37 -0.19 0.35 16 4 N -0.33 -7.83 7.31 -9.29 -0.07 -7.90 16 5 C 0.11 2.40 6.31 -82.42 -0.52 1.88 16 6 C 0.19 4.21 5.39 -5.20 -0.03 4.18 16 7 N -0.57 -13.18 2.51 -175.99 -0.44 -13.63 16 8 C -0.27 -6.83 9.77 -15.06 -0.15 -6.97 16 9 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 10 C 0.01 0.25 5.42 -17.43 -0.09 0.15 16 11 N -0.85 -22.29 6.35 55.49 0.35 -21.94 16 12 Si 0.90 21.39 29.55 -169.99 -5.02 16.37 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 C 0.18 3.43 5.85 -5.20 -0.03 3.40 16 17 C -0.08 -1.60 5.41 -104.63 -0.57 -2.17 16 18 C -0.10 -1.94 9.71 -39.58 -0.38 -2.33 16 19 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 20 C -0.14 -2.37 10.05 -39.58 -0.40 -2.77 16 21 C -0.12 -2.07 10.05 -39.58 -0.40 -2.47 16 22 C -0.11 -2.08 7.89 -39.58 -0.31 -2.39 16 23 C 0.03 0.61 8.57 -17.37 -0.15 0.46 16 24 N -0.45 -8.85 10.42 -9.29 -0.10 -8.95 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 28 H 0.14 2.58 8.06 -52.49 -0.42 2.16 16 29 H 0.02 0.39 7.76 -51.93 -0.40 -0.02 16 30 H 0.15 3.79 5.32 -53.10 -0.28 3.51 16 31 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.05 0.89 7.73 -51.93 -0.40 0.49 16 33 H 0.05 1.04 8.07 -51.93 -0.42 0.62 16 34 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 35 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.11 1.89 6.03 -52.49 -0.32 1.57 16 39 H 0.15 2.54 6.59 -52.49 -0.35 2.20 16 LS Contribution 322.11 15.07 4.85 4.85 Total: -1.00 -28.49 322.11 -9.32 -37.81 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.09 Total: 5.46 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -3.81 Total: -12.09 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.25 Total: -52.41 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.49 -9.32 -37.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207079166.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.151 kcal (2) G-P(sol) polarization free energy of solvation -28.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds