Wall clock time and date at job start Tue Mar 31 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46993 * 2 1 4 4 C 1.53005 * 109.46833 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46905 * 180.02562 * 4 3 2 6 6 C 1.36937 * 119.99871 * 275.31341 * 5 4 3 7 7 H 1.07993 * 120.00311 * 37.58161 * 6 5 4 8 8 C 1.38816 * 119.99670 * 217.58146 * 6 5 4 9 9 N 1.31617 * 119.99826 * 21.42201 * 8 6 5 10 10 Si 1.86799 * 119.99667 * 201.42486 * 8 6 5 11 11 H 1.48493 * 109.47411 * 60.00143 * 10 8 6 12 12 H 1.48506 * 109.46810 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47188 * 299.99592 * 10 8 6 14 14 C 1.46499 * 119.99904 * 95.31450 * 5 4 3 15 15 C 1.53000 * 109.46898 * 269.99678 * 14 5 4 16 16 C 1.50698 * 109.46995 * 179.97438 * 15 14 5 17 17 C 1.38206 * 119.98187 * 269.72378 * 16 15 14 18 18 C 1.38470 * 120.02847 * 179.76762 * 17 16 15 19 19 F 1.35103 * 120.01635 * 180.27921 * 18 17 16 20 20 C 1.38420 * 119.97099 * 0.53201 * 18 17 16 21 21 C 1.38409 * 119.95287 * 359.72553 * 20 18 17 22 22 F 1.35109 * 120.01686 * 179.97438 * 21 20 18 23 23 C 1.38213 * 119.97210 * 90.00588 * 16 15 14 24 24 H 1.08990 * 109.47352 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47059 * 300.00046 * 1 2 3 26 26 H 1.09004 * 109.46621 * 60.00141 * 1 2 3 27 27 H 1.08997 * 109.47059 * 239.99954 * 2 1 3 28 28 H 1.09000 * 109.46944 * 120.00241 * 2 1 3 29 29 H 1.09006 * 109.46866 * 60.00522 * 3 2 1 30 30 H 1.09000 * 109.47472 * 299.99917 * 3 2 1 31 31 H 1.08997 * 109.46702 * 60.00270 * 4 3 2 32 32 H 1.09000 * 109.47461 * 300.00459 * 4 3 2 33 33 H 0.97006 * 119.99602 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47279 * 29.99658 * 14 5 4 35 35 H 1.08992 * 109.47083 * 149.99781 * 14 5 4 36 36 H 1.08997 * 109.47630 * 299.99897 * 15 14 5 37 37 H 1.09004 * 109.46813 * 60.00371 * 15 14 5 38 38 H 1.08003 * 119.98363 * 0.02562 * 17 16 15 39 39 H 1.08012 * 120.02117 * 179.70403 * 20 18 17 40 40 H 1.08001 * 119.98592 * 359.96887 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8238 0.0013 6 6 4.1836 3.5062 -1.1793 7 1 3.4513 3.3710 -1.9615 8 6 5.2518 4.3718 -1.3706 9 7 6.3429 4.2407 -0.6464 10 14 5.1404 5.7228 -2.6559 11 1 4.0038 6.6218 -2.3320 12 1 6.4029 6.5047 -2.6627 13 1 4.9261 5.1163 -3.9943 14 6 4.4128 3.4748 1.2649 15 6 3.1820 4.1802 1.8379 16 6 3.5464 4.8494 3.1380 17 6 3.4140 4.1617 4.3296 18 6 3.7531 4.7740 5.5243 19 9 3.6290 4.0997 6.6884 20 6 4.2144 6.0791 5.5260 21 6 4.3415 6.7687 4.3327 22 9 4.7910 8.0428 4.3328 23 6 4.0072 6.1524 3.1385 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.9286 -0.8891 32 1 3.9331 0.9287 0.8908 33 1 7.0895 4.8454 -0.7804 34 1 4.7648 2.7252 1.9736 35 1 5.2013 4.2062 1.0881 36 1 2.8299 4.9298 1.1292 37 1 2.3934 3.4487 2.0147 38 1 3.0499 3.1449 4.3284 39 1 4.4746 6.5591 6.4580 40 1 4.1063 6.6902 2.2072 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209141439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:24 Heat of formation + Delta-G solvation = -72.412811 kcal Electronic energy + Delta-G solvation = -22103.921255 eV Core-core repulsion = 18554.307812 eV Total energy + Delta-G solvation = -3549.613442 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.90523 -48.84726 -38.88821 -36.50297 -34.25463 -32.59246 -31.20614 -30.12244 -28.69595 -27.32493 -24.56017 -23.25754 -22.66785 -21.44506 -20.36946 -20.16242 -17.49503 -17.02118 -16.70169 -16.22639 -15.83536 -15.53749 -15.18433 -14.91596 -14.88839 -14.24436 -13.94144 -13.73683 -13.54685 -12.93524 -12.87573 -12.44109 -12.23526 -12.06087 -11.76220 -11.71542 -11.40059 -11.24191 -11.02386 -10.95332 -10.68078 -10.58231 -10.51031 -10.31507 -10.08261 -9.70666 -9.55559 -8.67197 -8.59279 -8.49776 -6.60490 -5.83308 -3.42158 1.14637 1.18302 3.33110 3.40254 3.41610 3.55448 3.97725 4.42913 4.53971 4.74776 4.98178 5.08794 5.24031 5.30976 5.34557 5.39718 5.55091 5.64909 5.83429 5.93831 5.96384 6.03793 6.12134 6.15889 6.21357 6.27238 6.32229 6.35014 6.40902 6.51715 6.59816 6.62803 6.71860 6.94686 6.96641 7.07955 7.16172 7.62050 7.78547 8.47456 9.14407 9.76501 10.34989 11.15869 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.006049 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.895922 B = 4627.472029 C = 6748.413725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.137 4.137 4 C 0.146 3.854 5 N -0.582 5.582 6 C -0.263 4.263 7 H 0.060 0.940 8 C 0.015 3.985 9 N -0.885 5.885 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.154 3.846 15 C -0.107 4.107 16 C 0.001 3.999 17 C -0.167 4.167 18 C 0.127 3.873 19 F -0.138 7.138 20 C -0.211 4.211 21 C 0.129 3.871 22 F -0.136 7.136 23 C -0.159 4.159 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.033 0.967 33 H 0.256 0.744 34 H 0.026 0.974 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.943 -0.782 8.910 11.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.177 4.177 4 C 0.019 3.981 5 N -0.300 5.300 6 C -0.392 4.392 7 H 0.078 0.922 8 C -0.186 4.186 9 N -0.526 5.526 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.027 3.973 15 C -0.147 4.147 16 C 0.000 4.000 17 C -0.186 4.186 18 C 0.107 3.893 19 F -0.116 7.116 20 C -0.231 4.231 21 C 0.110 3.890 22 F -0.115 7.115 23 C -0.178 4.178 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.722 -0.692 8.915 11.186 hybrid contribution 0.042 0.943 -0.340 1.003 sum -6.680 0.251 8.575 10.873 Atomic orbital electron populations 1.21766 0.96780 1.00610 1.01502 1.21507 0.94984 0.98385 1.01266 1.22251 0.99554 0.94461 1.01457 1.20917 0.91161 0.87162 0.98830 1.43753 1.75634 1.08227 1.02398 1.18955 1.04784 1.21366 0.94119 0.92224 1.25186 0.94191 1.01218 0.98009 1.69989 1.03135 1.37229 1.42277 0.86516 0.76990 0.82408 0.81777 1.20812 1.21572 1.20649 1.20919 0.94042 0.96641 0.85701 1.21610 1.02156 0.99995 0.90953 1.19923 0.92359 0.92015 0.95692 1.21112 1.05219 1.01723 0.90563 1.17257 1.00423 0.90051 0.81531 1.91496 1.93687 1.79812 1.46635 1.20829 1.08752 0.94860 0.98676 1.17295 0.98370 0.79513 0.93813 1.91507 1.86621 1.35988 1.97362 1.21223 1.03030 0.96218 0.97376 0.93571 0.93145 0.93026 0.92494 0.92715 0.92970 0.92396 0.93791 0.94821 0.93393 0.95566 0.88540 0.90453 0.91754 0.84331 0.84125 0.83953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.86 16 3 C -0.14 -2.31 5.51 -26.73 -0.15 -2.46 16 4 C 0.15 2.90 5.72 -4.04 -0.02 2.87 16 5 N -0.58 -13.50 2.43 -173.24 -0.42 -13.93 16 6 C -0.26 -6.78 9.45 -15.06 -0.14 -6.92 16 7 H 0.06 1.55 7.92 -52.49 -0.42 1.13 16 8 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 9 N -0.88 -24.49 11.47 55.49 0.64 -23.85 16 10 Si 0.89 20.79 29.60 -169.99 -5.03 15.76 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 14 C 0.15 3.34 5.31 -4.04 -0.02 3.31 16 15 C -0.11 -1.93 5.67 -27.88 -0.16 -2.08 16 16 C 0.00 0.02 5.13 -104.64 -0.54 -0.51 16 17 C -0.17 -2.44 9.68 -39.51 -0.38 -2.82 16 18 C 0.13 1.79 7.30 -39.43 -0.29 1.50 16 19 F -0.14 -1.91 17.27 2.25 0.04 -1.87 16 20 C -0.21 -2.90 10.01 -39.45 -0.39 -3.29 16 21 C 0.13 1.94 7.30 -39.43 -0.29 1.65 16 22 F -0.14 -2.05 17.27 2.25 0.04 -2.02 16 23 C -0.16 -2.55 9.68 -39.50 -0.38 -2.93 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.87 6.64 -51.93 -0.34 0.52 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.03 0.63 7.83 -51.93 -0.41 0.23 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.03 0.55 7.86 -51.93 -0.41 0.14 16 35 H 0.10 2.41 5.52 -51.93 -0.29 2.12 16 36 H 0.08 1.48 8.09 -51.93 -0.42 1.06 16 37 H 0.06 1.08 6.58 -51.93 -0.34 0.74 16 38 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 39 H 0.14 1.63 8.06 -52.48 -0.42 1.20 16 40 H 0.14 2.30 8.06 -52.49 -0.42 1.87 16 LS Contribution 340.77 15.07 5.14 5.14 Total: -1.00 -26.61 340.77 -8.23 -34.84 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.98 Total: 0.60 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -2.64 Total: -14.66 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.21 Total: -37.78 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.08 Total: -3.88 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -26.61 -8.23 -34.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209141439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.578 kcal (2) G-P(sol) polarization free energy of solvation -26.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds