Wall clock time and date at job start Tue Mar 31 2020 05:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47354 * 2 1 4 4 N 1.46896 * 109.47649 * 179.53753 * 3 2 1 5 5 C 1.46898 * 111.00145 * 288.00808 * 4 3 2 6 6 C 1.50697 * 109.47335 * 160.35345 * 5 4 3 7 7 H 1.08002 * 119.99940 * 4.65977 * 6 5 4 8 8 C 1.37881 * 120.00352 * 184.65860 * 6 5 4 9 9 N 1.31514 * 119.99726 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00218 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47097 * 89.99835 * 10 8 6 12 12 H 1.48504 * 109.47007 * 209.99638 * 10 8 6 13 13 H 1.48501 * 109.47333 * 329.99844 * 10 8 6 14 14 C 1.46898 * 111.00263 * 164.05453 * 4 3 2 15 15 C 1.52997 * 109.47061 * 293.95463 * 14 4 3 16 16 C 1.50701 * 109.47373 * 180.02562 * 15 14 4 17 17 C 1.38253 * 119.96570 * 269.72495 * 16 15 14 18 18 C 1.38210 * 120.06975 * 179.76613 * 17 16 15 19 19 C 1.38410 * 120.00272 * 0.50821 * 18 17 16 20 20 F 1.35096 * 120.03491 * 179.72306 * 19 18 17 21 21 C 1.38652 * 119.92699 * 359.74806 * 19 18 17 22 22 F 1.35091 * 120.03617 * 180.02562 * 21 19 18 23 23 C 1.38212 * 119.96267 * 89.99868 * 16 15 14 24 24 H 1.09000 * 109.47062 * 59.99707 * 1 2 3 25 25 H 1.08998 * 109.46619 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46833 * 299.99545 * 1 2 3 27 27 H 1.08999 * 109.47160 * 240.00118 * 2 1 3 28 28 H 1.08997 * 109.47356 * 119.99860 * 2 1 3 29 29 H 1.09011 * 109.47083 * 59.53912 * 3 2 1 30 30 H 1.09004 * 109.47306 * 299.54174 * 3 2 1 31 31 H 1.09004 * 109.47485 * 280.35754 * 5 4 3 32 32 H 1.09005 * 109.46867 * 40.35632 * 5 4 3 33 33 H 0.97002 * 120.00236 * 180.02562 * 9 8 6 34 34 H 1.08989 * 109.47255 * 53.95303 * 14 4 3 35 35 H 1.08999 * 109.47320 * 173.95698 * 14 4 3 36 36 H 1.09004 * 109.47266 * 300.00317 * 15 14 4 37 37 H 1.09005 * 109.47313 * 59.99961 * 15 14 4 38 38 H 1.08002 * 119.96148 * 0.02562 * 17 16 15 39 39 H 1.08007 * 119.99622 * 180.25696 * 18 17 16 40 40 H 1.07999 * 120.00288 * 359.95732 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4426 0.0112 5 6 4.0255 1.0221 1.3205 6 6 5.4559 0.5708 1.1749 7 1 5.9574 0.6642 0.2229 8 6 6.1245 0.0385 2.2569 9 7 5.5137 -0.0757 3.4160 10 14 7.8978 -0.5203 2.0766 11 1 8.8075 0.6118 2.3867 12 1 8.1621 -1.6394 3.0163 13 1 8.1335 -0.9774 0.6835 14 6 4.0383 2.7602 -0.3651 15 6 3.6854 3.0537 -1.8246 16 6 4.2289 4.4052 -2.2109 17 6 3.4515 5.5360 -2.0425 18 6 3.9496 6.7771 -2.3915 19 6 5.2240 6.8877 -2.9201 20 9 5.7094 8.0998 -3.2667 21 6 6.0017 5.7530 -3.0939 22 9 7.2461 5.8585 -3.6091 23 6 5.5019 4.5122 -2.7384 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6700 1.9587 0.8859 30 1 1.6835 1.9540 -0.8941 31 1 3.9779 1.8601 2.0161 32 1 3.4217 0.1986 1.7019 33 1 5.9841 -0.4498 4.1774 34 1 3.5991 3.5247 0.2756 35 1 5.1217 2.7643 -0.2454 36 1 4.1246 2.2891 -2.4655 37 1 2.6020 3.0497 -1.9444 38 1 2.4555 5.4498 -1.6339 39 1 3.3428 7.6601 -2.2556 40 1 6.1068 3.6277 -2.8729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209244693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:44 Heat of formation + Delta-G solvation = -79.638559 kcal Electronic energy + Delta-G solvation = -21760.016260 eV Core-core repulsion = 18210.089486 eV Total energy + Delta-G solvation = -3549.926774 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.50716 -48.58462 -39.32573 -37.25879 -33.50659 -32.96003 -31.66458 -30.87230 -28.31259 -27.01874 -24.88324 -23.36683 -23.04104 -21.61617 -21.03856 -19.61333 -17.98337 -17.21014 -16.98260 -16.47644 -16.34421 -15.12217 -15.00511 -14.75133 -14.58845 -14.46235 -14.28055 -14.21579 -13.97670 -13.22054 -13.10224 -12.62093 -12.45713 -12.28135 -11.95027 -11.78373 -11.62491 -11.37797 -11.08112 -11.03079 -10.77345 -10.67062 -10.57539 -10.29931 -10.11044 -9.64879 -9.21808 -9.14290 -8.63468 -8.41554 -7.29098 -6.02781 -4.03764 0.83192 0.91472 3.26724 3.31653 3.38213 3.42125 3.71064 4.25259 4.40053 4.44854 4.56234 4.86418 5.01773 5.05404 5.32644 5.34909 5.44819 5.51408 5.63269 5.64928 5.74248 5.78829 5.84446 5.90360 5.95520 6.00377 6.13266 6.17246 6.28633 6.33740 6.52862 6.59731 6.67866 6.68913 6.82305 7.22914 7.32542 7.81080 8.11148 8.18464 8.52947 9.03560 9.60386 11.07808 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.004611 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.521609 B = 6071.232543 C = 7886.053183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.053 3.947 4 N -0.536 5.536 5 C 0.191 3.809 6 C -0.504 4.504 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.070 3.930 15 C -0.083 4.083 16 C -0.048 4.048 17 C -0.100 4.100 18 C -0.124 4.124 19 C 0.053 3.947 20 F -0.134 7.134 21 C 0.070 3.930 22 F -0.131 7.131 23 C -0.121 4.121 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.021 0.979 30 H 0.059 0.941 31 H -0.012 1.012 32 H 0.037 0.963 33 H 0.261 0.739 34 H 0.021 0.979 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 9.957 -11.580 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.075 4.075 4 N -0.260 5.260 5 C 0.066 3.934 6 C -0.542 4.542 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.058 4.058 15 C -0.120 4.120 16 C -0.049 4.049 17 C -0.118 4.118 18 C -0.143 4.143 19 C 0.032 3.968 20 F -0.113 7.113 21 C 0.050 3.950 22 F -0.110 7.110 23 C -0.140 4.140 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.005 0.995 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.659 9.594 -11.765 16.577 hybrid contribution 1.086 0.577 0.565 1.354 sum -5.572 10.171 -11.199 16.122 Atomic orbital electron populations 1.21745 0.96775 1.01058 1.01015 1.21504 0.93891 0.97242 1.03142 1.22113 0.89933 0.96462 0.99026 1.62127 1.04944 1.24811 1.34163 1.19785 0.95795 0.95004 0.82779 1.21158 0.96581 1.40219 0.96281 0.91959 1.24976 0.98316 0.96032 0.95267 1.69952 1.36985 1.46003 1.00999 0.86545 0.84876 0.78287 0.77999 1.20791 1.21287 1.19768 1.21921 1.01611 0.90312 0.92004 1.20802 1.00907 0.91581 0.98726 1.19975 0.92798 0.96658 0.95419 1.21033 1.00701 0.90784 0.99318 1.21040 0.93490 0.99655 1.00095 1.17673 0.94348 0.79650 1.05081 1.91504 1.88113 1.41479 1.90176 1.17702 0.81312 0.93777 1.02240 1.91520 1.38144 1.96837 1.84450 1.21108 0.96742 0.96015 1.00093 0.93350 0.93083 0.93219 0.91646 0.91272 0.96086 0.92245 0.99451 0.94472 0.92965 0.96058 0.89848 0.89641 0.90697 0.84346 0.83914 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.92 6.01 -26.73 -0.16 -2.08 16 3 C 0.05 0.88 4.83 -3.83 -0.02 0.87 16 4 N -0.54 -10.69 4.38 -236.08 -1.03 -11.72 16 5 C 0.19 4.78 4.59 -4.98 -0.02 4.76 16 6 C -0.50 -13.76 8.61 -34.44 -0.30 -14.06 16 7 H 0.06 1.68 7.66 -52.49 -0.40 1.28 16 8 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 10 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.07 1.21 4.77 -3.83 -0.02 1.20 16 15 C -0.08 -1.08 5.31 -27.88 -0.15 -1.23 16 16 C -0.05 -0.57 5.13 -104.63 -0.54 -1.11 16 17 C -0.10 -1.04 9.70 -39.59 -0.38 -1.43 16 18 C -0.12 -1.28 10.02 -39.53 -0.40 -1.67 16 19 C 0.05 0.65 7.31 -39.37 -0.29 0.37 16 20 F -0.13 -1.76 17.18 2.25 0.04 -1.72 16 21 C 0.07 0.92 7.31 -39.36 -0.29 0.64 16 22 F -0.13 -1.86 17.18 2.25 0.04 -1.82 16 23 C -0.12 -1.52 9.68 -39.53 -0.38 -1.90 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.29 6.53 -51.93 -0.34 0.95 16 29 H 0.02 0.36 8.05 -51.92 -0.42 -0.05 16 30 H 0.06 0.84 5.94 -51.93 -0.31 0.53 16 31 H -0.01 -0.33 8.00 -51.93 -0.42 -0.75 16 32 H 0.04 1.00 6.24 -51.93 -0.32 0.67 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.02 0.37 8.12 -51.94 -0.42 -0.05 16 35 H 0.08 1.63 7.32 -51.93 -0.38 1.25 16 36 H 0.09 1.14 8.08 -51.93 -0.42 0.72 16 37 H 0.07 0.88 6.22 -51.93 -0.32 0.55 16 38 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 338.73 15.07 5.10 5.10 Total: -1.00 -29.33 338.73 -8.65 -37.98 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -5.85 Total: -2.89 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -2.67 Total: -15.72 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.30 Total: -37.36 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.08 Total: -3.55 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.33 -8.65 -37.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209244693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.662 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds