Wall clock time and date at job start Tue Mar 31 2020 05:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47354 * 2 1 4 4 N 1.46896 * 109.47649 * 179.53753 * 3 2 1 5 5 C 1.46898 * 111.00145 * 288.00808 * 4 3 2 6 6 C 1.50697 * 109.47335 * 160.35345 * 5 4 3 7 7 H 1.08002 * 119.99940 * 4.65977 * 6 5 4 8 8 C 1.37881 * 120.00352 * 184.65860 * 6 5 4 9 9 N 1.31514 * 119.99726 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00218 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47097 * 89.99835 * 10 8 6 12 12 H 1.48504 * 109.47007 * 209.99638 * 10 8 6 13 13 H 1.48501 * 109.47333 * 329.99844 * 10 8 6 14 14 C 1.46898 * 111.00263 * 164.05453 * 4 3 2 15 15 C 1.52997 * 109.47061 * 293.95463 * 14 4 3 16 16 C 1.50701 * 109.47373 * 180.02562 * 15 14 4 17 17 C 1.38253 * 119.96570 * 269.72495 * 16 15 14 18 18 C 1.38210 * 120.06975 * 179.76613 * 17 16 15 19 19 C 1.38410 * 120.00272 * 0.50821 * 18 17 16 20 20 F 1.35096 * 120.03491 * 179.72306 * 19 18 17 21 21 C 1.38652 * 119.92699 * 359.74806 * 19 18 17 22 22 F 1.35091 * 120.03617 * 180.02562 * 21 19 18 23 23 C 1.38212 * 119.96267 * 89.99868 * 16 15 14 24 24 H 1.09000 * 109.47062 * 59.99707 * 1 2 3 25 25 H 1.08998 * 109.46619 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46833 * 299.99545 * 1 2 3 27 27 H 1.08999 * 109.47160 * 240.00118 * 2 1 3 28 28 H 1.08997 * 109.47356 * 119.99860 * 2 1 3 29 29 H 1.09011 * 109.47083 * 59.53912 * 3 2 1 30 30 H 1.09004 * 109.47306 * 299.54174 * 3 2 1 31 31 H 1.09004 * 109.47485 * 280.35754 * 5 4 3 32 32 H 1.09005 * 109.46867 * 40.35632 * 5 4 3 33 33 H 0.97002 * 120.00236 * 180.02562 * 9 8 6 34 34 H 1.08989 * 109.47255 * 53.95303 * 14 4 3 35 35 H 1.08999 * 109.47320 * 173.95698 * 14 4 3 36 36 H 1.09004 * 109.47266 * 300.00317 * 15 14 4 37 37 H 1.09005 * 109.47313 * 59.99961 * 15 14 4 38 38 H 1.08002 * 119.96148 * 0.02562 * 17 16 15 39 39 H 1.08007 * 119.99622 * 180.25696 * 18 17 16 40 40 H 1.07999 * 120.00288 * 359.95732 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4426 0.0112 5 6 4.0255 1.0221 1.3205 6 6 5.4559 0.5708 1.1749 7 1 5.9574 0.6642 0.2229 8 6 6.1245 0.0385 2.2569 9 7 5.5137 -0.0757 3.4160 10 14 7.8978 -0.5203 2.0766 11 1 8.8075 0.6118 2.3867 12 1 8.1621 -1.6394 3.0163 13 1 8.1335 -0.9774 0.6835 14 6 4.0383 2.7602 -0.3651 15 6 3.6854 3.0537 -1.8246 16 6 4.2289 4.4052 -2.2109 17 6 3.4515 5.5360 -2.0425 18 6 3.9496 6.7771 -2.3915 19 6 5.2240 6.8877 -2.9201 20 9 5.7094 8.0998 -3.2667 21 6 6.0017 5.7530 -3.0939 22 9 7.2461 5.8585 -3.6091 23 6 5.5019 4.5122 -2.7384 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6700 1.9587 0.8859 30 1 1.6835 1.9540 -0.8941 31 1 3.9779 1.8601 2.0161 32 1 3.4217 0.1986 1.7019 33 1 5.9841 -0.4498 4.1774 34 1 3.5991 3.5247 0.2756 35 1 5.1217 2.7643 -0.2454 36 1 4.1246 2.2891 -2.4655 37 1 2.6020 3.0497 -1.9444 38 1 2.4555 5.4498 -1.6339 39 1 3.3428 7.6601 -2.2556 40 1 6.1068 3.6277 -2.8729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209244693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:44 Heat of formation + Delta-G solvation = -95.074789 kcal Electronic energy + Delta-G solvation = -21760.685625 eV Core-core repulsion = 18210.089486 eV Total energy + Delta-G solvation = -3550.596140 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.51578 -49.60098 -40.30352 -38.72838 -34.92805 -34.64926 -33.04831 -31.79611 -29.78003 -28.55641 -26.26112 -24.72577 -24.20547 -22.97728 -22.17766 -21.10099 -18.95563 -18.57770 -18.17177 -17.94369 -17.35366 -16.80769 -16.23652 -16.03292 -15.89552 -15.65698 -15.57913 -15.45951 -14.96049 -14.56227 -14.33574 -13.97143 -13.75446 -13.55459 -13.45497 -13.19008 -12.78104 -12.70113 -12.60460 -12.42516 -12.27896 -12.11678 -12.02814 -11.75765 -11.66830 -11.23899 -11.11067 -10.57132 -10.05670 -9.61058 -8.94910 -8.17631 -6.26505 -0.11653 0.02392 1.40854 1.41306 1.52735 2.34656 2.41227 2.78611 3.13418 3.25290 3.33185 3.58852 3.79841 4.04177 4.12301 4.16665 4.26718 4.30877 4.45350 4.60232 4.70826 4.75472 4.78025 4.80674 4.87044 4.94311 5.02327 5.04982 5.10237 5.14132 5.24583 5.31869 5.36739 5.44000 5.50434 5.55662 5.70188 5.77155 6.12886 6.44954 6.71412 6.89721 7.42715 8.92704 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.004611 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.521609 B = 6071.232543 C = 7886.053183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C 0.053 3.947 4 N -0.543 5.543 5 C 0.207 3.793 6 C -0.516 4.516 7 H 0.061 0.939 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.961 3.039 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.265 1.265 14 C 0.071 3.929 15 C -0.066 4.066 16 C -0.056 4.056 17 C -0.089 4.089 18 C -0.113 4.113 19 C 0.042 3.958 20 F -0.141 7.141 21 C 0.048 3.952 22 F -0.143 7.143 23 C -0.127 4.127 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.030 0.970 29 H 0.014 0.986 30 H 0.098 0.902 31 H -0.043 1.043 32 H 0.012 0.988 33 H 0.263 0.737 34 H 0.023 0.977 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.169 0.831 39 H 0.174 0.826 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.245 10.734 -12.947 18.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C -0.075 4.075 4 N -0.267 5.267 5 C 0.081 3.919 6 C -0.555 4.555 7 H 0.079 0.921 8 C -0.195 4.195 9 N -0.576 5.576 10 Si 0.787 3.213 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.189 1.189 14 C -0.057 4.057 15 C -0.103 4.103 16 C -0.057 4.057 17 C -0.107 4.107 18 C -0.132 4.132 19 C 0.022 3.978 20 F -0.120 7.120 21 C 0.028 3.972 22 F -0.122 7.122 23 C -0.146 4.146 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.032 0.968 30 H 0.116 0.884 31 H -0.026 1.026 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.186 0.814 39 H 0.192 0.808 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.988 10.380 -13.156 18.564 hybrid contribution 1.447 0.375 0.988 1.792 sum -6.541 10.755 -12.168 17.507 Atomic orbital electron populations 1.21677 0.93708 1.02128 1.02228 1.21481 0.96553 0.96431 1.01186 1.22256 0.87581 0.97226 1.00428 1.62046 1.07261 1.26618 1.30740 1.19401 0.94814 0.92988 0.84744 1.21490 0.97823 1.39937 0.96204 0.92106 1.25836 1.02632 0.96152 0.94921 1.70075 1.38778 1.46972 1.01790 0.85500 0.79653 0.77913 0.78283 1.20184 1.20828 1.18892 1.21906 0.99743 0.88962 0.95077 1.20604 1.02382 0.92177 0.95167 1.19927 0.92807 0.96773 0.96144 1.21367 1.01566 0.89947 0.97795 1.21375 0.92566 1.00849 0.98393 1.17957 0.95199 0.79118 1.05522 1.91486 1.88361 1.41775 1.90328 1.17917 0.81271 0.94529 1.03491 1.91480 1.38991 1.96929 1.84818 1.21168 0.97236 0.95849 1.00367 0.90880 0.92201 0.93169 0.91743 0.95086 0.96799 0.88406 1.02569 0.96964 0.92845 0.95909 0.92840 0.89932 0.88205 0.81364 0.80821 0.83482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.91 71.98 0.71 -2.49 16 2 C -0.12 -3.72 6.01 30.59 0.18 -3.53 16 3 C 0.05 1.68 4.83 86.30 0.42 2.10 16 4 N -0.54 -21.67 4.38 -900.81 -3.95 -25.61 16 5 C 0.21 10.74 4.59 85.56 0.39 11.13 16 6 C -0.52 -28.94 8.61 25.60 0.22 -28.72 16 7 H 0.06 3.35 7.66 -2.91 -0.02 3.33 16 8 C 0.00 0.13 5.46 84.66 0.46 0.59 16 9 N -0.94 -56.27 13.29 21.45 0.28 -55.98 16 10 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 14 C 0.07 2.43 4.77 86.30 0.41 2.84 16 15 C -0.07 -1.57 5.31 29.85 0.16 -1.42 16 16 C -0.06 -1.22 5.13 -19.87 -0.10 -1.32 16 17 C -0.09 -1.53 9.70 22.27 0.22 -1.31 16 18 C -0.11 -1.97 10.02 22.30 0.22 -1.75 16 19 C 0.04 0.98 7.31 22.41 0.16 1.15 16 20 F -0.14 -3.55 17.18 44.97 0.77 -2.78 16 21 C 0.05 1.25 7.31 22.41 0.16 1.41 16 22 F -0.14 -4.14 17.18 44.97 0.77 -3.37 16 23 C -0.13 -3.12 9.68 22.31 0.22 -2.90 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.03 1.19 6.53 -2.39 -0.02 1.17 16 29 H 0.01 0.46 8.05 -2.38 -0.02 0.45 16 30 H 0.10 2.38 5.94 -2.39 -0.01 2.36 16 31 H -0.04 -2.46 8.00 -2.39 -0.02 -2.48 16 32 H 0.01 0.69 6.24 -2.38 -0.01 0.68 16 33 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.02 0.77 8.12 -2.39 -0.02 0.75 16 35 H 0.05 2.13 7.32 -2.39 -0.02 2.11 16 36 H 0.08 2.05 8.08 -2.38 -0.02 2.03 16 37 H 0.10 1.90 6.22 -2.38 -0.01 1.88 16 38 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -65.74 338.73 4.78 -60.97 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.03 Total: 4.45 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 3.84 Total: -24.22 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -3.66 Total: -81.60 kcal Atomic # 9 Polarization: -7.69 SS G_CDS: 1.55 Total: -6.15 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -65.74 4.78 -60.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209244693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.110 kcal (2) G-P(sol) polarization free energy of solvation -65.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds