Wall clock time and date at job start Tue Mar 31 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 120.00039 * 2 1 4 4 C 1.39708 * 119.99843 * 179.97438 * 2 1 3 5 5 C 1.39003 * 120.44620 * 179.97438 * 4 2 1 6 6 N 1.31800 * 120.82989 * 180.02562 * 5 4 2 7 7 C 1.31802 * 121.87894 * 359.69662 * 6 5 4 8 8 C 1.39007 * 120.80916 * 0.59430 * 7 6 5 9 9 N 1.39613 * 120.45980 * 179.70020 * 8 7 6 10 10 C 1.38684 * 119.99960 * 5.54274 * 9 8 7 11 11 C 1.38807 * 120.30212 * 256.10658 * 10 9 8 12 12 C 1.38114 * 120.02262 * 180.02562 * 11 10 9 13 13 C 1.38929 * 120.63758 * 359.97438 * 12 11 10 14 14 C 1.36424 * 120.60354 * 0.02562 * 13 12 11 15 15 C 1.40746 * 119.95277 * 359.97438 * 14 13 12 16 16 C 1.41017 * 120.30722 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99713 * 204.20182 * 16 15 14 18 18 C 1.39905 * 120.00151 * 24.20670 * 16 15 14 19 19 N 1.30893 * 120.00264 * 18.87033 * 18 16 15 20 20 Si 1.86799 * 120.00036 * 198.87033 * 18 16 15 21 21 H 1.48500 * 109.47111 * 90.00203 * 20 18 16 22 22 H 1.48507 * 109.47045 * 210.00259 * 20 18 16 23 23 H 1.48491 * 109.47329 * 329.99893 * 20 18 16 24 24 C 1.39109 * 120.45154 * 0.02562 * 4 2 1 25 25 H 1.08995 * 109.47123 * 240.00167 * 1 2 3 26 26 H 1.09001 * 109.47255 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47103 * 119.99924 * 1 2 3 28 28 H 1.08991 * 109.47100 * 270.00138 * 3 2 1 29 29 H 1.09004 * 109.46897 * 29.99610 * 3 2 1 30 30 H 1.08993 * 109.47078 * 149.99652 * 3 2 1 31 31 H 1.08002 * 119.59032 * 0.04411 * 5 4 2 32 32 H 1.08000 * 119.59410 * 180.30995 * 7 6 5 33 33 H 0.96999 * 120.00539 * 185.55341 * 9 8 7 34 34 H 1.07996 * 119.98540 * 359.97438 * 11 10 9 35 35 H 1.08004 * 119.68336 * 179.71688 * 12 11 10 36 36 H 1.08003 * 119.70051 * 179.97438 * 13 12 11 37 37 H 1.08001 * 120.02313 * 180.02562 * 14 13 12 38 38 H 0.96994 * 119.99960 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.85065 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1635 -1.2099 0.0005 5 6 3.5535 -1.2208 0.0000 6 7 4.2201 -2.3578 0.0000 7 6 3.6066 -3.5243 0.0064 8 6 2.2186 -3.5988 0.0011 9 7 1.5764 -4.8385 0.0017 10 6 2.3183 -6.0038 0.1236 11 6 2.5557 -6.8023 -0.9868 12 6 3.2949 -7.9619 -0.8587 13 6 3.8080 -8.3418 0.3752 14 6 3.5905 -7.5763 1.4833 15 6 2.8406 -6.3897 1.3815 16 6 2.6116 -5.5925 2.5220 17 1 1.7574 -4.9326 2.5569 18 6 3.4910 -5.6564 3.6082 19 7 4.6943 -6.1462 3.4482 20 14 2.9480 -5.0428 5.2869 21 1 2.3255 -6.1583 6.0441 22 1 4.1271 -4.5350 6.0335 23 1 1.9600 -3.9473 5.1178 24 6 1.4774 -2.4201 0.0005 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 2.3792 1.5834 -1.0276 29 1 1.6084 2.0284 0.5138 30 1 3.1498 1.1384 0.5139 31 1 4.0941 -0.2858 -0.0001 32 1 4.1896 -4.4335 0.0113 33 1 0.6112 -4.8848 -0.0833 34 1 2.1614 -6.5171 -1.9509 35 1 3.4724 -8.5815 -1.7254 36 1 4.3837 -9.2518 0.4581 37 1 3.9941 -7.8803 2.4378 38 1 5.3038 -6.1908 4.2014 39 1 0.3977 -2.4446 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210477235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:39 Heat of formation + Delta-G solvation = 71.815595 kcal Electronic energy + Delta-G solvation = -21800.635283 eV Core-core repulsion = 18707.965240 eV Total energy + Delta-G solvation = -3092.670043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.70930 -38.00195 -36.37480 -34.60436 -33.71630 -30.89596 -29.63703 -29.38647 -28.39865 -27.13931 -25.20363 -24.59507 -22.29479 -21.31724 -20.99338 -19.70684 -17.37076 -17.11468 -16.63277 -15.74865 -15.31860 -15.01586 -14.94237 -14.85883 -14.19147 -13.83422 -13.65921 -12.82970 -12.74464 -12.71635 -12.58724 -12.51976 -12.17100 -11.76347 -11.64148 -11.27910 -11.22354 -11.13565 -10.85257 -10.51995 -10.43912 -9.84669 -9.70746 -9.43625 -9.21572 -8.75050 -7.56774 -7.49955 -7.24008 -6.86215 -6.49315 -4.41005 2.20369 2.25787 2.70304 2.89190 3.04870 3.08317 3.19826 3.30566 3.89433 4.38564 4.57719 4.77009 5.03379 5.18031 5.31266 5.46014 5.56193 5.59038 5.64614 5.72692 5.76036 5.85651 5.96267 6.11336 6.18307 6.36496 6.54012 6.61953 6.82529 6.99936 7.11834 7.21073 7.29017 7.40381 7.45297 7.67527 7.75791 7.87618 8.03878 8.18459 8.31248 8.46527 8.67997 8.79626 8.99072 9.03224 10.09023 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.006286 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.994951 B = 4452.984957 C = 5576.571848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.638 5.638 3 C 0.098 3.902 4 C 0.197 3.803 5 C -0.052 4.052 6 N -0.418 5.418 7 C 0.013 3.987 8 C 0.236 3.764 9 N -0.654 5.654 10 C -0.012 4.012 11 C -0.081 4.081 12 C -0.242 4.242 13 C -0.100 4.100 14 C -0.157 4.157 15 C 0.117 3.883 16 C -0.439 4.439 17 H 0.078 0.922 18 C 0.079 3.921 19 N -0.779 5.779 20 Si 0.904 3.096 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.263 1.263 24 C -0.249 4.249 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.137 0.863 32 H 0.153 0.847 33 H 0.389 0.611 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.283 0.717 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.204 8.769 -3.342 11.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.353 5.353 3 C -0.045 4.045 4 C 0.094 3.906 5 C -0.214 4.214 6 N -0.125 5.125 7 C -0.153 4.153 8 C 0.127 3.873 9 N -0.273 5.273 10 C -0.106 4.106 11 C -0.101 4.101 12 C -0.262 4.262 13 C -0.119 4.119 14 C -0.177 4.177 15 C 0.112 3.888 16 C -0.467 4.467 17 H 0.096 0.904 18 C -0.141 4.141 19 N -0.403 5.403 20 Si 0.729 3.271 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.187 1.187 24 C -0.284 4.284 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.171 0.829 33 H 0.223 0.777 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.094 0.906 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.030 8.779 -3.192 10.609 hybrid contribution -1.517 0.270 0.853 1.761 sum -6.547 9.049 -2.340 11.412 Atomic orbital electron populations 1.21505 0.80100 1.01629 1.01049 1.46134 1.04533 1.03014 1.81589 1.21585 0.97360 0.84840 1.00747 1.18475 0.92242 0.85279 0.94613 1.21822 0.88871 0.96509 1.14173 1.67325 1.40008 0.97871 1.07299 1.22151 0.90357 0.95504 1.07310 1.18715 0.93049 0.85587 0.89947 1.41123 1.07144 1.01358 1.77695 1.17256 1.10400 0.90148 0.92778 1.20711 0.98240 0.95348 0.95797 1.20190 1.08939 1.00277 0.96817 1.20470 0.99349 0.98475 0.93615 1.21005 1.03732 0.95006 0.97979 1.17773 0.89402 0.90854 0.90727 1.19404 1.08821 1.20368 0.98133 0.90422 1.25918 0.93863 0.93420 1.00900 1.69844 1.04323 1.33258 1.32862 0.86357 0.79445 0.79900 0.81425 1.19212 1.20145 1.18651 1.20272 0.98966 0.89970 1.19180 0.93078 0.91436 0.93173 0.93798 0.92068 0.91238 0.84548 0.82933 0.77655 0.89269 0.89349 0.89403 0.86355 0.90643 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.09 9.43 59.85 0.56 1.65 16 2 N -0.64 -8.71 3.41 -187.45 -0.64 -9.35 16 3 C 0.10 1.03 10.17 59.85 0.61 1.64 16 4 C 0.20 3.42 6.56 -83.66 -0.55 2.87 16 5 C -0.05 -0.98 10.38 -17.28 -0.18 -1.15 16 6 N -0.42 -9.19 10.34 -12.88 -0.13 -9.32 16 7 C 0.01 0.30 10.38 -17.28 -0.18 0.12 16 8 C 0.24 4.90 6.19 -83.66 -0.52 4.38 16 9 N -0.65 -13.26 4.68 -7.97 -0.04 -13.30 16 10 C -0.01 -0.28 4.56 -83.28 -0.38 -0.66 16 11 C -0.08 -1.76 9.96 -39.42 -0.39 -2.15 16 12 C -0.24 -5.24 10.03 -39.37 -0.40 -5.63 16 13 C -0.10 -2.27 9.96 -39.98 -0.40 -2.67 16 14 C -0.16 -3.92 8.64 -39.29 -0.34 -4.26 16 15 C 0.12 2.93 5.19 -106.63 -0.55 2.38 16 16 C -0.44 -11.19 8.30 -37.91 -0.31 -11.50 16 17 H 0.08 1.99 7.59 -52.49 -0.40 1.59 16 18 C 0.08 1.95 5.12 -17.33 -0.09 1.86 16 19 N -0.78 -19.73 11.00 55.55 0.61 -19.12 16 20 Si 0.90 18.91 29.60 -169.99 -5.03 13.88 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 24 C -0.25 -4.53 9.29 -38.89 -0.36 -4.89 16 25 H 0.05 0.57 7.99 -51.93 -0.41 0.16 16 26 H 0.07 0.55 7.79 -51.93 -0.40 0.14 16 27 H 0.05 0.53 7.99 -51.93 -0.41 0.11 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.51 7.92 -51.93 -0.41 0.09 16 30 H 0.07 0.75 6.22 -51.93 -0.32 0.42 16 31 H 0.14 2.20 6.15 -52.49 -0.32 1.87 16 32 H 0.15 3.89 6.80 -52.49 -0.36 3.53 16 33 H 0.39 6.87 8.85 -40.82 -0.36 6.51 16 34 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 37 H 0.12 3.04 6.17 -52.49 -0.32 2.72 16 38 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 39 H 0.12 1.90 6.88 -52.49 -0.36 1.53 16 LS Contribution 325.48 15.07 4.90 4.90 Total: -1.00 -28.22 325.48 -8.72 -36.94 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -4.92 Total: 13.39 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -3.48 Total: -18.03 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.20 Total: -51.09 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.22 -8.72 -36.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210477235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.758 kcal (2) G-P(sol) polarization free energy of solvation -28.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds