Wall clock time and date at job start Tue Mar 31 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 120.00039 * 2 1 4 4 C 1.39708 * 119.99843 * 179.97438 * 2 1 3 5 5 C 1.39003 * 120.44620 * 179.97438 * 4 2 1 6 6 N 1.31800 * 120.82989 * 180.02562 * 5 4 2 7 7 C 1.31802 * 121.87894 * 359.69662 * 6 5 4 8 8 C 1.39007 * 120.80916 * 0.59430 * 7 6 5 9 9 N 1.39613 * 120.45980 * 179.70020 * 8 7 6 10 10 C 1.38684 * 119.99960 * 5.54274 * 9 8 7 11 11 C 1.38807 * 120.30212 * 256.10658 * 10 9 8 12 12 C 1.38114 * 120.02262 * 180.02562 * 11 10 9 13 13 C 1.38929 * 120.63758 * 359.97438 * 12 11 10 14 14 C 1.36424 * 120.60354 * 0.02562 * 13 12 11 15 15 C 1.40746 * 119.95277 * 359.97438 * 14 13 12 16 16 C 1.41017 * 120.30722 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99713 * 204.20182 * 16 15 14 18 18 C 1.39905 * 120.00151 * 24.20670 * 16 15 14 19 19 N 1.30893 * 120.00264 * 18.87033 * 18 16 15 20 20 Si 1.86799 * 120.00036 * 198.87033 * 18 16 15 21 21 H 1.48500 * 109.47111 * 90.00203 * 20 18 16 22 22 H 1.48507 * 109.47045 * 210.00259 * 20 18 16 23 23 H 1.48491 * 109.47329 * 329.99893 * 20 18 16 24 24 C 1.39109 * 120.45154 * 0.02562 * 4 2 1 25 25 H 1.08995 * 109.47123 * 240.00167 * 1 2 3 26 26 H 1.09001 * 109.47255 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47103 * 119.99924 * 1 2 3 28 28 H 1.08991 * 109.47100 * 270.00138 * 3 2 1 29 29 H 1.09004 * 109.46897 * 29.99610 * 3 2 1 30 30 H 1.08993 * 109.47078 * 149.99652 * 3 2 1 31 31 H 1.08002 * 119.59032 * 0.04411 * 5 4 2 32 32 H 1.08000 * 119.59410 * 180.30995 * 7 6 5 33 33 H 0.96999 * 120.00539 * 185.55341 * 9 8 7 34 34 H 1.07996 * 119.98540 * 359.97438 * 11 10 9 35 35 H 1.08004 * 119.68336 * 179.71688 * 12 11 10 36 36 H 1.08003 * 119.70051 * 179.97438 * 13 12 11 37 37 H 1.08001 * 120.02313 * 180.02562 * 14 13 12 38 38 H 0.96994 * 119.99960 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.85065 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1635 -1.2099 0.0005 5 6 3.5535 -1.2208 0.0000 6 7 4.2201 -2.3578 0.0000 7 6 3.6066 -3.5243 0.0064 8 6 2.2186 -3.5988 0.0011 9 7 1.5764 -4.8385 0.0017 10 6 2.3183 -6.0038 0.1236 11 6 2.5557 -6.8023 -0.9868 12 6 3.2949 -7.9619 -0.8587 13 6 3.8080 -8.3418 0.3752 14 6 3.5905 -7.5763 1.4833 15 6 2.8406 -6.3897 1.3815 16 6 2.6116 -5.5925 2.5220 17 1 1.7574 -4.9326 2.5569 18 6 3.4910 -5.6564 3.6082 19 7 4.6943 -6.1462 3.4482 20 14 2.9480 -5.0428 5.2869 21 1 2.3255 -6.1583 6.0441 22 1 4.1271 -4.5350 6.0335 23 1 1.9600 -3.9473 5.1178 24 6 1.4774 -2.4201 0.0005 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 2.3792 1.5834 -1.0276 29 1 1.6084 2.0284 0.5138 30 1 3.1498 1.1384 0.5139 31 1 4.0941 -0.2858 -0.0001 32 1 4.1896 -4.4335 0.0113 33 1 0.6112 -4.8848 -0.0833 34 1 2.1614 -6.5171 -1.9509 35 1 3.4724 -8.5815 -1.7254 36 1 4.3837 -9.2518 0.4581 37 1 3.9941 -7.8803 2.4378 38 1 5.3038 -6.1908 4.2014 39 1 0.3977 -2.4446 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210477235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:38 Heat of formation + Delta-G solvation = 56.197763 kcal Electronic energy + Delta-G solvation = -21801.312523 eV Core-core repulsion = 18707.965240 eV Total energy + Delta-G solvation = -3093.347283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.21215 -39.67526 -37.65003 -36.22866 -35.53649 -32.38176 -31.45738 -30.82859 -29.62224 -28.57692 -26.98237 -25.84857 -23.76748 -22.91583 -22.74179 -21.27229 -19.18885 -18.50758 -18.21933 -17.31129 -16.97348 -16.49137 -16.26451 -16.00440 -15.85083 -15.54258 -14.98404 -14.48327 -14.32302 -14.28167 -13.93292 -13.46707 -13.40717 -13.17821 -13.02368 -12.98831 -12.84055 -12.61211 -12.41466 -12.25616 -12.08414 -11.51309 -11.19746 -11.10228 -11.03778 -10.31160 -9.33586 -9.30937 -8.74619 -8.50707 -8.02384 -6.30124 0.69166 0.71358 0.95671 1.10150 1.32328 1.43531 1.49478 2.16343 2.22472 2.71975 2.86875 3.21458 3.72298 3.99350 4.16768 4.20934 4.29577 4.33490 4.47924 4.56995 4.58875 4.63523 4.71131 4.82844 4.87763 4.92656 4.96044 5.14396 5.19296 5.29321 5.33312 5.43447 5.57541 5.72512 5.90232 6.06067 6.20370 6.34320 6.36912 6.44292 6.53981 6.80632 6.90428 6.98452 7.25946 7.45663 8.29353 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.006286 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.994951 B = 4452.984957 C = 5576.571848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.635 5.635 3 C 0.088 3.912 4 C 0.207 3.793 5 C -0.057 4.057 6 N -0.442 5.442 7 C -0.026 4.026 8 C 0.229 3.771 9 N -0.652 5.652 10 C -0.005 4.005 11 C -0.089 4.089 12 C -0.237 4.237 13 C -0.106 4.106 14 C -0.184 4.184 15 C 0.091 3.909 16 C -0.462 4.462 17 H 0.068 0.932 18 C 0.039 3.961 19 N -0.813 5.813 20 Si 0.967 3.033 21 H -0.257 1.257 22 H -0.271 1.271 23 H -0.265 1.265 24 C -0.249 4.249 25 H 0.048 0.952 26 H 0.101 0.899 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.163 0.837 32 H 0.113 0.887 33 H 0.402 0.598 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.287 0.713 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.040 10.930 -3.983 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.346 5.346 3 C -0.054 4.054 4 C 0.101 3.899 5 C -0.221 4.221 6 N -0.150 5.150 7 C -0.190 4.190 8 C 0.121 3.879 9 N -0.274 5.274 10 C -0.099 4.099 11 C -0.109 4.109 12 C -0.257 4.257 13 C -0.125 4.125 14 C -0.204 4.204 15 C 0.087 3.913 16 C -0.491 4.491 17 H 0.086 0.914 18 C -0.177 4.177 19 N -0.439 5.439 20 Si 0.789 3.211 21 H -0.181 1.181 22 H -0.196 1.196 23 H -0.190 1.190 24 C -0.284 4.284 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.180 0.820 32 H 0.130 0.870 33 H 0.239 0.761 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.897 10.954 -3.849 13.504 hybrid contribution -0.985 -0.226 0.889 1.346 sum -7.883 10.727 -2.959 13.637 Atomic orbital electron populations 1.21755 0.78132 1.03990 1.01138 1.46500 1.05950 1.02568 1.79595 1.21857 0.97522 0.83927 1.02058 1.18549 0.92022 0.86754 0.92581 1.22292 0.90049 0.96336 1.13376 1.67194 1.41261 0.98520 1.08013 1.21603 0.91138 0.94688 1.11580 1.18691 0.92422 0.86439 0.90353 1.41006 1.07577 1.00696 1.78131 1.17401 1.09409 0.90696 0.92392 1.21021 0.98124 0.95274 0.96434 1.20577 1.07506 1.00285 0.97304 1.20743 0.99280 0.98978 0.93451 1.20999 1.05202 0.95984 0.98197 1.18074 0.90237 0.91180 0.91825 1.19429 1.09144 1.21177 0.99399 0.91409 1.26635 0.93633 0.93540 1.03906 1.69902 1.05187 1.34913 1.33863 0.85422 0.78921 0.79402 0.77379 1.18112 1.19599 1.18961 1.20495 1.00108 0.89267 1.18565 0.93340 0.88076 0.92668 0.92389 0.89098 0.91685 0.81974 0.86975 0.76126 0.86932 0.86311 0.87241 0.88104 0.90240 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.61 9.43 127.77 1.20 2.81 16 2 N -0.63 -14.99 3.41 -746.96 -2.55 -17.54 16 3 C 0.09 1.49 10.17 127.77 1.30 2.79 16 4 C 0.21 6.79 6.56 38.28 0.25 7.04 16 5 C -0.06 -2.07 10.38 84.88 0.88 -1.19 16 6 N -0.44 -19.92 10.34 -194.66 -2.01 -21.94 16 7 C -0.03 -1.24 10.38 84.88 0.88 -0.36 16 8 C 0.23 9.63 6.19 38.33 0.24 9.87 16 9 N -0.65 -26.72 4.68 -179.12 -0.84 -27.56 16 10 C 0.00 -0.23 4.56 39.02 0.18 -0.05 16 11 C -0.09 -3.82 9.96 22.38 0.22 -3.59 16 12 C -0.24 -10.03 10.03 22.41 0.22 -9.81 16 13 C -0.11 -4.84 9.96 22.01 0.22 -4.62 16 14 C -0.18 -9.53 8.64 22.46 0.19 -9.34 16 15 C 0.09 4.75 5.19 -21.16 -0.11 4.64 16 16 C -0.46 -24.61 8.30 23.36 0.19 -24.41 16 17 H 0.07 3.61 7.59 -2.91 -0.02 3.59 16 18 C 0.04 2.00 5.12 85.24 0.44 2.44 16 19 N -0.81 -43.24 11.00 21.82 0.24 -43.00 16 20 Si 0.97 39.74 29.60 68.60 2.03 41.77 16 21 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 C -0.25 -8.72 9.29 22.72 0.21 -8.51 16 25 H 0.05 0.90 7.99 -2.39 -0.02 0.88 16 26 H 0.10 1.12 7.79 -2.39 -0.02 1.10 16 27 H 0.05 0.94 7.99 -2.39 -0.02 0.92 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 1.05 7.92 -2.39 -0.02 1.03 16 30 H 0.06 1.18 6.22 -2.39 -0.01 1.16 16 31 H 0.16 4.91 6.15 -2.91 -0.02 4.89 16 32 H 0.11 6.17 6.80 -2.91 -0.02 6.15 16 33 H 0.40 14.02 8.85 -92.71 -0.82 13.20 16 34 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 36 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.10 5.49 6.17 -2.91 -0.02 5.47 16 38 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 39 H 0.15 4.23 6.88 -2.91 -0.02 4.21 16 Total: -1.00 -64.27 325.48 3.65 -60.62 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: 0.25 Total: 39.94 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 6.52 Total: -32.30 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -5.16 Total: -110.03 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -64.27 3.65 -60.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210477235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.819 kcal (2) G-P(sol) polarization free energy of solvation -64.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds