Wall clock time and date at job start Tue Mar 31 2020 05:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47104 * 2 1 4 4 N 1.46896 * 109.47333 * 184.68429 * 3 2 1 5 5 C 1.46902 * 111.00068 * 300.13617 * 4 3 2 6 6 C 1.50703 * 109.47220 * 288.97262 * 5 4 3 7 7 H 1.07996 * 119.99570 * 4.64387 * 6 5 4 8 8 C 1.37875 * 119.99843 * 184.64732 * 6 5 4 9 9 N 1.31507 * 120.00396 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99518 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47168 * 90.00207 * 10 8 6 12 12 H 1.48506 * 109.46739 * 209.99692 * 10 8 6 13 13 H 1.48492 * 109.47349 * 330.00014 * 10 8 6 14 14 C 1.46903 * 110.99882 * 64.08566 * 4 3 2 15 15 C 1.50709 * 109.46495 * 76.33804 * 14 4 3 16 16 C 1.38229 * 119.98440 * 95.64274 * 15 14 4 17 17 C 1.38183 * 120.04626 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.98789 * 180.27604 * 17 16 15 19 19 C 1.38491 * 120.02880 * 359.97438 * 17 16 15 20 20 F 1.35101 * 120.01684 * 180.02562 * 19 17 16 21 21 C 1.38401 * 119.97206 * 359.97438 * 19 17 16 22 22 C 1.38441 * 119.95048 * 359.97438 * 21 19 17 23 23 F 1.35102 * 120.01231 * 179.97438 * 22 21 19 24 24 H 1.09001 * 109.46756 * 300.00035 * 1 2 3 25 25 H 1.09005 * 109.47234 * 59.99344 * 1 2 3 26 26 H 1.08992 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46871 * 240.00488 * 2 1 3 28 28 H 1.08993 * 109.46983 * 120.00035 * 2 1 3 29 29 H 1.09007 * 109.46712 * 64.68281 * 3 2 1 30 30 H 1.09001 * 109.47473 * 304.68836 * 3 2 1 31 31 H 1.09007 * 109.46887 * 48.97128 * 5 4 3 32 32 H 1.08999 * 109.47546 * 168.96681 * 5 4 3 33 33 H 0.97002 * 120.00367 * 179.97438 * 9 8 6 34 34 H 1.08992 * 109.47331 * 316.34153 * 14 4 3 35 35 H 1.09000 * 109.46959 * 196.33239 * 14 4 3 36 36 H 1.08001 * 119.98070 * 359.97438 * 16 15 14 37 37 H 1.08998 * 109.47038 * 269.72624 * 18 17 16 38 38 H 1.09004 * 109.46807 * 29.72692 * 18 17 16 39 39 H 1.08996 * 109.47572 * 149.72144 * 18 17 16 40 40 H 1.08004 * 120.02331 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5046 1.4441 -0.1131 5 6 4.1202 0.7241 1.0097 6 6 3.9647 1.5337 2.2713 7 1 3.3948 2.4509 2.2575 8 6 4.5502 1.1033 3.4431 9 7 5.2438 -0.0138 3.4600 10 14 4.3581 2.1073 5.0066 11 1 3.1465 1.6574 5.7380 12 1 5.5541 1.9180 5.8664 13 1 4.2211 3.5443 4.6586 14 6 3.9339 0.8791 -1.3994 15 6 3.7147 1.8939 -2.4918 16 6 4.7541 2.7117 -2.8938 17 6 4.5547 3.6422 -3.8957 18 6 5.6905 4.5288 -4.3372 19 6 3.3131 3.7561 -4.4986 20 9 3.1185 4.6656 -5.4785 21 6 2.2720 2.9371 -4.0977 22 6 2.4732 2.0045 -3.0945 23 9 1.4577 1.2047 -2.7018 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.7468 1.9315 0.9290 30 1 1.6098 1.9801 -0.8450 31 1 3.6298 -0.2413 1.1348 32 1 5.1796 0.5696 0.8053 33 1 5.6560 -0.3164 4.2843 34 1 3.3528 -0.0175 -1.6145 35 1 4.9921 0.6229 -1.3486 36 1 5.7228 2.6233 -2.4245 37 1 5.6893 5.4432 -3.7440 38 1 6.6361 4.0053 -4.1960 39 1 5.5677 4.7791 -5.3909 40 1 1.3035 3.0249 -4.5676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232782426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:53 Heat of formation + Delta-G solvation = -72.041228 kcal Electronic energy + Delta-G solvation = -22732.507597 eV Core-core repulsion = 19182.910267 eV Total energy + Delta-G solvation = -3549.597329 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.99947 -48.89603 -39.18448 -37.25424 -32.91987 -32.80840 -32.19446 -30.81479 -27.35278 -26.59323 -26.06681 -24.01603 -22.69021 -22.13173 -20.97739 -19.14921 -18.10392 -17.34029 -16.35522 -16.09360 -15.52766 -15.41295 -15.20877 -14.80893 -14.55762 -14.48924 -13.98901 -13.70793 -13.57403 -13.38599 -13.10246 -12.90466 -12.31769 -12.21368 -11.72807 -11.67573 -11.48393 -11.32181 -11.18604 -10.94646 -10.89693 -10.77581 -10.68773 -10.46067 -9.88961 -9.70739 -9.25016 -8.90373 -8.45408 -8.35214 -7.20431 -6.02454 -4.02873 1.01850 1.08313 3.31859 3.37988 3.39094 3.43322 3.93627 4.43298 4.49191 4.59730 4.67134 4.80217 5.10712 5.17007 5.34814 5.40889 5.51018 5.55159 5.56149 5.66076 5.80685 5.81661 5.88511 5.93958 6.02837 6.12739 6.15547 6.19951 6.35129 6.43688 6.48118 6.52361 6.75178 6.84886 6.97038 7.25765 7.38604 7.80034 8.07393 8.19057 8.52735 9.04057 9.60864 11.08187 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.004880 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.987679 B = 5736.180596 C = 6705.476104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.160 4.160 3 C 0.060 3.940 4 N -0.527 5.527 5 C 0.188 3.812 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.896 3.104 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.082 3.918 15 C -0.093 4.093 16 C -0.049 4.049 17 C -0.129 4.129 18 C -0.111 4.111 19 C 0.112 3.888 20 F -0.137 7.137 21 C -0.190 4.190 22 C 0.125 3.875 23 F -0.125 7.125 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.058 0.942 31 H -0.001 1.001 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.144 0.856 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.310 4.294 -15.519 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.199 4.199 3 C -0.069 4.069 4 N -0.250 5.250 5 C 0.064 3.936 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.724 3.276 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.046 4.046 15 C -0.095 4.095 16 C -0.067 4.067 17 C -0.131 4.131 18 C -0.168 4.168 19 C 0.093 3.907 20 F -0.115 7.115 21 C -0.210 4.210 22 C 0.105 3.895 23 F -0.104 7.104 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.017 0.983 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.162 0.838 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.065 4.673 -15.378 16.362 hybrid contribution -0.667 -0.369 0.816 1.116 sum -3.732 4.305 -14.562 15.637 Atomic orbital electron populations 1.21636 0.96479 1.00613 1.01185 1.22124 0.95584 1.00176 1.01984 1.22198 0.88161 0.94746 1.01777 1.62410 1.06909 1.54869 1.00810 1.19857 0.94266 0.92412 0.87084 1.21122 1.32097 1.08100 0.92691 0.92021 1.24952 0.95344 0.95218 0.99009 1.69946 1.34690 1.21796 1.27538 0.86534 0.77455 0.80610 0.83047 1.20792 1.21305 1.19821 1.21072 1.01594 0.92842 0.89139 1.20157 0.91772 0.99720 0.97812 1.20738 0.99492 0.92460 0.94036 1.19953 0.94337 1.00157 0.98605 1.20700 0.95682 0.98735 1.01636 1.17047 0.93765 0.90443 0.89477 1.91474 1.95658 1.64694 1.59686 1.20899 1.00426 0.98670 1.00955 1.17156 0.85101 0.91581 0.95655 1.91509 1.58066 1.71356 1.89439 0.92968 0.93310 0.93678 0.92775 0.90876 0.90492 0.92411 0.98287 0.95159 0.92980 0.93489 0.89914 0.83839 0.90663 0.90749 0.91402 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.16 -2.88 4.71 -26.73 -0.13 -3.01 16 3 C 0.06 1.16 4.65 -3.82 -0.02 1.14 16 4 N -0.53 -11.01 4.58 -237.50 -1.09 -12.09 16 5 C 0.19 4.71 4.55 -4.97 -0.02 4.69 16 6 C -0.50 -13.80 8.66 -34.44 -0.30 -14.09 16 7 H 0.06 1.71 7.28 -52.49 -0.38 1.32 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 10 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.08 1.42 4.89 -4.97 -0.02 1.40 16 15 C -0.09 -1.41 5.26 -104.55 -0.55 -1.96 16 16 C -0.05 -0.65 9.33 -39.61 -0.37 -1.02 16 17 C -0.13 -1.59 5.89 -104.55 -0.62 -2.20 16 18 C -0.11 -1.06 9.83 36.01 0.35 -0.71 16 19 C 0.11 1.43 7.24 -39.43 -0.29 1.15 16 20 F -0.14 -1.70 16.48 2.25 0.04 -1.67 16 21 C -0.19 -2.45 10.01 -39.45 -0.39 -2.85 16 22 C 0.13 1.83 6.31 -39.43 -0.25 1.58 16 23 F -0.13 -1.91 13.30 2.25 0.03 -1.88 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.70 8.10 -51.93 -0.42 0.27 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.95 5.64 -51.93 -0.29 0.66 16 28 H 0.07 1.51 6.43 -51.93 -0.33 1.18 16 29 H 0.08 1.63 7.12 -51.92 -0.37 1.26 16 30 H 0.06 1.05 4.99 -51.93 -0.26 0.79 16 31 H 0.00 -0.01 5.88 -51.93 -0.31 -0.32 16 32 H 0.03 0.81 7.70 -51.93 -0.40 0.41 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.05 0.81 5.42 -51.93 -0.28 0.53 16 35 H 0.08 1.40 7.55 -51.93 -0.39 1.01 16 36 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.07 0.60 7.64 -51.93 -0.40 0.20 16 40 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -28.90 325.89 -8.22 -37.12 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.50 Total: -1.13 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -2.33 Total: -16.23 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.35 Total: -37.62 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.07 Total: -3.55 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.90 -8.22 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232782426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.920 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds