Wall clock time and date at job start Tue Mar 31 2020 05:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47104 * 2 1 4 4 N 1.46896 * 109.47333 * 184.68429 * 3 2 1 5 5 C 1.46902 * 111.00068 * 300.13617 * 4 3 2 6 6 C 1.50703 * 109.47220 * 288.97262 * 5 4 3 7 7 H 1.07996 * 119.99570 * 4.64387 * 6 5 4 8 8 C 1.37875 * 119.99843 * 184.64732 * 6 5 4 9 9 N 1.31507 * 120.00396 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99518 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47168 * 90.00207 * 10 8 6 12 12 H 1.48506 * 109.46739 * 209.99692 * 10 8 6 13 13 H 1.48492 * 109.47349 * 330.00014 * 10 8 6 14 14 C 1.46903 * 110.99882 * 64.08566 * 4 3 2 15 15 C 1.50709 * 109.46495 * 76.33804 * 14 4 3 16 16 C 1.38229 * 119.98440 * 95.64274 * 15 14 4 17 17 C 1.38183 * 120.04626 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.98789 * 180.27604 * 17 16 15 19 19 C 1.38491 * 120.02880 * 359.97438 * 17 16 15 20 20 F 1.35101 * 120.01684 * 180.02562 * 19 17 16 21 21 C 1.38401 * 119.97206 * 359.97438 * 19 17 16 22 22 C 1.38441 * 119.95048 * 359.97438 * 21 19 17 23 23 F 1.35102 * 120.01231 * 179.97438 * 22 21 19 24 24 H 1.09001 * 109.46756 * 300.00035 * 1 2 3 25 25 H 1.09005 * 109.47234 * 59.99344 * 1 2 3 26 26 H 1.08992 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46871 * 240.00488 * 2 1 3 28 28 H 1.08993 * 109.46983 * 120.00035 * 2 1 3 29 29 H 1.09007 * 109.46712 * 64.68281 * 3 2 1 30 30 H 1.09001 * 109.47473 * 304.68836 * 3 2 1 31 31 H 1.09007 * 109.46887 * 48.97128 * 5 4 3 32 32 H 1.08999 * 109.47546 * 168.96681 * 5 4 3 33 33 H 0.97002 * 120.00367 * 179.97438 * 9 8 6 34 34 H 1.08992 * 109.47331 * 316.34153 * 14 4 3 35 35 H 1.09000 * 109.46959 * 196.33239 * 14 4 3 36 36 H 1.08001 * 119.98070 * 359.97438 * 16 15 14 37 37 H 1.08998 * 109.47038 * 269.72624 * 18 17 16 38 38 H 1.09004 * 109.46807 * 29.72692 * 18 17 16 39 39 H 1.08996 * 109.47572 * 149.72144 * 18 17 16 40 40 H 1.08004 * 120.02331 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5046 1.4441 -0.1131 5 6 4.1202 0.7241 1.0097 6 6 3.9647 1.5337 2.2713 7 1 3.3948 2.4509 2.2575 8 6 4.5502 1.1033 3.4431 9 7 5.2438 -0.0138 3.4600 10 14 4.3581 2.1073 5.0066 11 1 3.1465 1.6574 5.7380 12 1 5.5541 1.9180 5.8664 13 1 4.2211 3.5443 4.6586 14 6 3.9339 0.8791 -1.3994 15 6 3.7147 1.8939 -2.4918 16 6 4.7541 2.7117 -2.8938 17 6 4.5547 3.6422 -3.8957 18 6 5.6905 4.5288 -4.3372 19 6 3.3131 3.7561 -4.4986 20 9 3.1185 4.6656 -5.4785 21 6 2.2720 2.9371 -4.0977 22 6 2.4732 2.0045 -3.0945 23 9 1.4577 1.2047 -2.7018 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.7468 1.9315 0.9290 30 1 1.6098 1.9801 -0.8450 31 1 3.6298 -0.2413 1.1348 32 1 5.1796 0.5696 0.8053 33 1 5.6560 -0.3164 4.2843 34 1 3.3528 -0.0175 -1.6145 35 1 4.9921 0.6229 -1.3486 36 1 5.7228 2.6233 -2.4245 37 1 5.6893 5.4432 -3.7440 38 1 6.6361 4.0053 -4.1960 39 1 5.5677 4.7791 -5.3909 40 1 1.3035 3.0249 -4.5676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232782426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:52 Heat of formation + Delta-G solvation = -87.257183 kcal Electronic energy + Delta-G solvation = -22733.167410 eV Core-core repulsion = 19182.910267 eV Total energy + Delta-G solvation = -3550.257143 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.04715 -49.99331 -40.34116 -38.78058 -34.86698 -34.09794 -33.33823 -32.22918 -29.12248 -27.66844 -27.42732 -25.67660 -23.85322 -23.74017 -22.23202 -20.67789 -19.17456 -18.45201 -18.36183 -17.38119 -16.80730 -16.62914 -16.51937 -16.25027 -15.96250 -15.83215 -15.39832 -15.09606 -14.91044 -14.40196 -14.22282 -14.21363 -13.93383 -13.33797 -13.12237 -13.04154 -12.82849 -12.72992 -12.58683 -12.51651 -12.38709 -12.26652 -12.20618 -12.12815 -11.75769 -11.32867 -11.23715 -10.57167 -9.96029 -9.46880 -8.91079 -8.16734 -6.25181 -0.06080 0.04107 1.41748 1.42223 1.53798 2.30445 2.43400 2.88451 3.15254 3.42129 3.44512 3.56399 3.73013 3.76937 4.05990 4.12146 4.17350 4.38139 4.46000 4.56301 4.61536 4.71345 4.75699 4.79683 4.87114 4.88832 4.95290 5.02756 5.11142 5.15383 5.20863 5.22982 5.32723 5.35138 5.41239 5.49457 5.69069 5.80878 6.09252 6.37406 6.62633 6.89231 7.43345 8.93475 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.004880 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.987679 B = 5736.180596 C = 6705.476104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.152 4.152 3 C 0.065 3.935 4 N -0.535 5.535 5 C 0.205 3.795 6 C -0.516 4.516 7 H 0.056 0.944 8 C 0.006 3.994 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.085 3.915 15 C -0.109 4.109 16 C -0.052 4.052 17 C -0.123 4.123 18 C -0.112 4.112 19 C 0.111 3.889 20 F -0.132 7.132 21 C -0.184 4.184 22 C 0.112 3.888 23 F -0.132 7.132 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.075 0.925 31 H -0.021 1.021 32 H 0.007 0.993 33 H 0.263 0.737 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.152 0.848 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.837 5.716 -16.540 17.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.190 4.190 3 C -0.063 4.063 4 N -0.258 5.258 5 C 0.079 3.921 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.192 4.192 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.192 1.192 14 C -0.042 4.042 15 C -0.110 4.110 16 C -0.071 4.071 17 C -0.124 4.124 18 C -0.168 4.168 19 C 0.092 3.908 20 F -0.111 7.111 21 C -0.203 4.203 22 C 0.092 3.908 23 F -0.110 7.110 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.094 0.906 31 H -0.004 1.004 32 H 0.025 0.975 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.170 0.830 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.604 6.104 -16.420 17.885 hybrid contribution -0.488 -0.786 1.024 1.380 sum -4.092 5.317 -15.397 16.795 Atomic orbital electron populations 1.21590 0.93971 1.01863 1.01854 1.22000 0.97754 0.98784 1.00505 1.22149 0.87361 0.95595 1.01242 1.62296 1.07757 1.54570 1.01138 1.19485 0.92866 0.91595 0.88169 1.21405 1.31946 1.08064 0.94006 0.92566 1.25782 0.94942 0.96232 1.02281 1.70062 1.35531 1.23291 1.28492 0.85492 0.77624 0.79182 0.78980 1.20096 1.20722 1.19187 1.21020 1.01369 0.93682 0.88146 1.19993 0.92968 1.00214 0.97864 1.20860 0.99431 0.92383 0.94415 1.20216 0.95061 0.99614 0.97532 1.20797 0.95239 0.98547 1.02223 1.17148 0.93919 0.90339 0.89444 1.91490 1.95643 1.64485 1.59465 1.21057 1.01438 0.97699 1.00106 1.17241 0.84725 0.92283 0.96502 1.91480 1.58254 1.71670 1.89622 0.93012 0.91865 0.92191 0.92321 0.94192 0.92767 0.90644 1.00363 0.97526 0.92798 0.93570 0.90071 0.83020 0.89980 0.89291 0.90442 0.81935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.91 71.98 0.71 -3.26 16 2 C -0.15 -5.54 4.71 30.60 0.14 -5.40 16 3 C 0.06 2.54 4.65 86.30 0.40 2.94 16 4 N -0.54 -22.85 4.58 -905.33 -4.15 -26.99 16 5 C 0.20 10.65 4.55 85.56 0.39 11.04 16 6 C -0.52 -29.05 8.66 25.60 0.22 -28.83 16 7 H 0.06 3.16 7.28 -2.91 -0.02 3.14 16 8 C 0.01 0.31 5.46 84.66 0.46 0.77 16 9 N -0.93 -55.53 13.29 21.45 0.28 -55.25 16 10 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 C 0.09 3.02 4.89 85.56 0.42 3.43 16 15 C -0.11 -3.24 5.26 -19.81 -0.10 -3.34 16 16 C -0.05 -1.34 9.33 22.25 0.21 -1.13 16 17 C -0.12 -2.75 5.89 -19.82 -0.12 -2.87 16 18 C -0.11 -1.83 9.83 71.24 0.70 -1.13 16 19 C 0.11 2.57 7.24 22.37 0.16 2.73 16 20 F -0.13 -2.94 16.48 44.97 0.74 -2.20 16 21 C -0.18 -4.34 10.01 22.36 0.22 -4.12 16 22 C 0.11 3.14 6.31 22.37 0.14 3.28 16 23 F -0.13 -3.85 13.30 44.97 0.60 -3.25 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.68 8.10 -2.38 -0.02 1.67 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 2.07 5.64 -2.39 -0.01 2.06 16 28 H 0.04 1.72 6.43 -2.39 -0.02 1.70 16 29 H 0.05 2.35 7.12 -2.38 -0.02 2.33 16 30 H 0.08 2.70 4.99 -2.39 -0.01 2.69 16 31 H -0.02 -1.18 5.88 -2.38 -0.01 -1.19 16 32 H 0.01 0.37 7.70 -2.39 -0.02 0.35 16 33 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 34 H 0.05 1.62 5.42 -2.39 -0.01 1.61 16 35 H 0.08 2.83 7.55 -2.39 -0.02 2.81 16 36 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.21 8.08 -2.38 -0.02 1.19 16 39 H 0.08 1.14 7.64 -2.39 -0.02 1.12 16 40 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -62.13 325.89 4.52 -57.61 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.05 Total: 9.58 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 3.96 Total: -25.89 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -3.86 Total: -82.24 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 1.34 Total: -5.45 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -62.13 4.52 -57.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232782426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.644 kcal (2) G-P(sol) polarization free energy of solvation -62.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds