Wall clock time and date at job start Tue Mar 31 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00141 * 2 1 4 4 C 1.50703 * 109.47097 * 287.92650 * 3 2 1 5 5 C 1.37637 * 120.13209 * 105.03250 * 4 3 2 6 6 C 1.38608 * 120.25203 * 179.97438 * 5 4 3 7 7 C 1.38657 * 120.50172 * 0.02562 * 6 5 4 8 8 C 1.37595 * 120.24857 * 0.02562 * 7 6 5 9 9 C 1.40704 * 120.12551 * 285.03756 * 4 3 2 10 10 C 1.41393 * 120.24484 * 0.02562 * 9 4 3 11 11 H 1.08000 * 120.00008 * 26.64716 * 10 9 4 12 12 C 1.39941 * 119.99903 * 206.64724 * 10 9 4 13 13 N 1.30820 * 120.00331 * 12.97067 * 12 10 9 14 14 Si 1.86800 * 119.99844 * 192.97067 * 12 10 9 15 15 H 1.48505 * 109.47104 * 60.00043 * 14 12 10 16 16 H 1.48498 * 109.46958 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47439 * 299.99926 * 14 12 10 18 18 C 1.46904 * 111.00103 * 123.95099 * 2 1 3 19 19 C 1.50696 * 109.46897 * 66.04202 * 18 2 1 20 20 N 1.31791 * 119.12915 * 269.73254 * 19 18 2 21 21 C 1.32332 * 120.82423 * 179.76298 * 20 19 18 22 22 C 1.38598 * 119.10003 * 0.50396 * 21 20 19 23 23 C 1.38593 * 118.40233 * 359.74910 * 22 21 20 24 24 N 1.31803 * 119.11920 * 90.00605 * 19 18 2 25 25 H 1.08998 * 109.47148 * 62.81933 * 1 2 3 26 26 H 1.08998 * 109.47334 * 182.81743 * 1 2 3 27 27 H 1.09009 * 109.47410 * 302.82347 * 1 2 3 28 28 H 1.09005 * 109.47493 * 167.92790 * 3 2 1 29 29 H 1.09005 * 109.47291 * 47.92234 * 3 2 1 30 30 H 1.07999 * 119.86960 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.74910 * 180.02562 * 6 5 4 32 32 H 1.07999 * 119.87538 * 180.02562 * 7 6 5 33 33 H 1.07996 * 120.13012 * 179.72172 * 8 7 6 34 34 H 0.97001 * 120.00688 * 179.97438 * 13 12 10 35 35 H 1.08994 * 109.47358 * 186.04686 * 18 2 1 36 36 H 1.09001 * 109.46927 * 306.04741 * 18 2 1 37 37 H 1.07995 * 120.45152 * 180.23244 * 21 20 19 38 38 H 1.08003 * 120.80140 * 179.77772 * 22 21 20 39 39 H 1.08004 * 120.45080 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7672 1.9971 -1.3519 5 6 0.7752 2.9364 -1.5199 6 6 0.5635 3.5138 -2.7620 7 6 1.3459 3.1531 -3.8484 8 6 2.3426 2.2155 -3.7040 9 6 2.5672 1.6232 -2.4472 10 6 3.5888 0.6589 -2.2868 11 1 3.5084 -0.0891 -1.5119 12 6 4.7040 0.6738 -3.1320 13 7 4.9329 1.7116 -3.8948 14 14 5.8660 -0.7884 -3.1709 15 1 5.1189 -2.0035 -3.5840 16 1 6.9591 -0.5262 -4.1412 17 1 6.4433 -0.9980 -1.8188 18 6 1.9954 -0.7659 1.1376 19 6 1.6368 -2.2203 0.9730 20 7 0.5045 -2.6634 1.4813 21 6 0.1542 -3.9330 1.3525 22 6 1.0011 -4.8011 0.6816 23 6 2.1854 -4.2994 0.1654 24 7 2.4666 -3.0166 0.3291 25 1 -0.3633 0.4694 -0.9142 26 1 -0.3634 -1.0264 0.0505 27 1 -0.3634 0.5571 0.8636 28 1 3.0639 1.3505 0.2149 29 1 1.4827 1.9575 0.7628 30 1 0.1596 3.2245 -0.6806 31 1 -0.2168 4.2504 -2.8846 32 1 1.1724 3.6098 -4.8116 33 1 2.9479 1.9327 -4.5525 34 1 5.7061 1.7221 -4.4805 35 1 3.0796 -0.6611 1.1757 36 1 1.5611 -0.3871 2.0628 37 1 -0.7768 -4.2888 1.7682 38 1 0.7442 -5.8435 0.5635 39 1 2.8695 -4.9464 -0.3636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235511080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:09 Heat of formation + Delta-G solvation = 80.373994 kcal Electronic energy + Delta-G solvation = -21786.285693 eV Core-core repulsion = 18693.986770 eV Total energy + Delta-G solvation = -3092.298923 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92817 -38.02339 -36.25732 -33.60613 -33.49553 -32.42457 -30.27402 -29.31213 -27.45349 -26.24670 -24.96651 -24.42853 -23.08141 -21.20829 -20.79200 -19.32136 -17.42970 -17.04103 -16.86252 -15.53417 -15.44938 -15.19602 -14.58620 -14.46317 -13.96861 -13.93327 -13.54825 -13.17740 -13.14407 -12.51498 -12.39973 -11.60764 -11.56552 -11.41271 -11.24690 -11.10577 -10.93982 -10.75173 -10.72018 -10.61996 -10.39901 -10.24676 -9.54085 -9.41958 -9.19595 -9.10806 -9.06047 -7.67767 -7.25937 -7.18198 -6.58994 -4.19540 0.93831 1.17571 2.89620 3.05912 3.16401 3.23096 3.37196 3.78159 4.05506 4.07705 4.25009 4.60609 4.72150 4.86641 4.98974 5.12072 5.38951 5.53374 5.79144 5.83017 5.89040 5.92233 6.01305 6.15113 6.29135 6.35564 6.42902 6.53727 6.57718 6.60280 6.92593 7.08524 7.23478 7.39561 7.49026 7.61051 7.67631 7.79125 8.04247 8.19835 8.24417 8.28809 8.45144 8.83294 9.08403 9.14451 10.34539 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.006518 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.860231 B = 4294.837953 C = 5844.346774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.517 5.517 3 C 0.130 3.870 4 C -0.194 4.194 5 C -0.086 4.086 6 C -0.247 4.247 7 C -0.108 4.108 8 C -0.162 4.162 9 C 0.131 3.869 10 C -0.441 4.441 11 H 0.094 0.906 12 C 0.072 3.928 13 N -0.803 5.803 14 Si 0.907 3.093 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.265 1.265 18 C 0.118 3.882 19 C 0.340 3.660 20 N -0.518 5.518 21 C 0.143 3.857 22 C -0.240 4.240 23 C 0.148 3.852 24 N -0.494 5.494 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.018 0.982 28 H 0.076 0.924 29 H 0.020 0.980 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.277 0.723 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.164 0.836 38 H 0.143 0.857 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 -10.180 8.181 13.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.241 5.241 3 C 0.004 3.996 4 C -0.196 4.196 5 C -0.105 4.105 6 C -0.266 4.266 7 C -0.127 4.127 8 C -0.182 4.182 9 C 0.128 3.872 10 C -0.470 4.470 11 H 0.112 0.888 12 C -0.145 4.145 13 N -0.429 5.429 14 Si 0.732 3.268 15 H -0.190 1.190 16 H -0.209 1.209 17 H -0.190 1.190 18 C -0.012 4.012 19 C 0.072 3.928 20 N -0.233 5.233 21 C -0.023 4.023 22 C -0.262 4.262 23 C -0.019 4.019 24 N -0.208 5.208 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.037 0.963 28 H 0.094 0.906 29 H 0.038 0.962 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.181 0.819 38 H 0.161 0.839 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.283 -9.350 7.715 12.857 hybrid contribution -0.049 -1.257 0.343 1.304 sum -4.332 -10.607 8.058 14.007 Atomic orbital electron populations 1.22338 0.87786 1.00843 1.00632 1.61963 1.07449 1.15214 1.39504 1.20649 0.99291 0.84976 0.94692 1.19433 1.03251 1.02760 0.94120 1.20355 0.97017 0.97528 0.95593 1.20275 1.04823 1.07221 0.94314 1.20676 0.96856 0.98680 0.96478 1.21412 0.98483 1.00024 0.98260 1.17383 0.90196 0.89980 0.89664 1.19790 1.01319 1.12125 1.13812 0.88817 1.25966 0.98676 0.95993 0.93830 1.69822 1.25887 1.27377 1.19824 0.86388 0.79198 0.82364 0.78853 1.18972 1.20896 1.18953 1.20824 1.01598 0.85120 0.93614 1.23179 0.85203 0.97025 0.87368 1.68301 1.17973 1.16141 1.20839 1.23160 0.98348 0.88636 0.92185 1.22853 0.97802 1.02679 1.02887 1.23294 0.94322 0.91715 0.92520 1.68350 1.34045 1.04532 1.13872 0.91025 0.92422 0.96334 0.90569 0.96206 0.90004 0.89955 0.89846 0.86383 0.91212 0.88223 0.92880 0.81922 0.83905 0.81746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.21 60.06 0.55 1.14 16 2 N -0.52 -10.01 4.04 -245.82 -0.99 -11.00 16 3 C 0.13 2.65 4.30 -4.98 -0.02 2.63 16 4 C -0.19 -4.60 4.74 -103.91 -0.49 -5.10 16 5 C -0.09 -1.95 9.29 -39.66 -0.37 -2.32 16 6 C -0.25 -5.70 10.05 -39.29 -0.39 -6.09 16 7 C -0.11 -2.63 10.02 -39.66 -0.40 -3.03 16 8 C -0.16 -4.32 8.67 -38.87 -0.34 -4.66 16 9 C 0.13 3.46 5.57 -106.82 -0.59 2.87 16 10 C -0.44 -11.64 8.22 -37.74 -0.31 -11.95 16 11 H 0.09 2.45 6.65 -52.49 -0.35 2.10 16 12 C 0.07 1.83 5.23 -17.35 -0.09 1.74 16 13 N -0.80 -21.10 10.83 55.55 0.60 -20.50 16 14 Si 0.91 19.56 29.58 -169.99 -5.03 14.54 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 18 C 0.12 1.99 5.39 -4.98 -0.03 1.96 16 19 C 0.34 5.62 6.42 -157.19 -1.01 4.61 16 20 N -0.52 -7.67 9.09 -10.73 -0.10 -7.76 16 21 C 0.14 1.62 11.31 -17.20 -0.19 1.42 16 22 C -0.24 -2.45 10.17 -39.32 -0.40 -2.85 16 23 C 0.15 1.87 11.30 -17.20 -0.19 1.68 16 24 N -0.49 -8.26 10.34 -10.72 -0.11 -8.37 16 25 H 0.07 1.41 7.27 -51.93 -0.38 1.03 16 26 H 0.06 1.01 6.20 -51.93 -0.32 0.69 16 27 H 0.02 0.30 8.06 -51.92 -0.42 -0.11 16 28 H 0.08 1.60 7.30 -51.93 -0.38 1.22 16 29 H 0.02 0.37 7.80 -51.93 -0.40 -0.03 16 30 H 0.08 1.66 7.99 -52.49 -0.42 1.24 16 31 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.08 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.12 3.26 6.15 -52.49 -0.32 2.94 16 34 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 35 H 0.10 1.67 7.86 -51.93 -0.41 1.27 16 36 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 37 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -29.95 327.07 -10.05 -40.00 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.07 Total: 6.12 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -4.28 Total: -17.94 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.60 Total: -47.64 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.95 -10.05 -40.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.371 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds