Wall clock time and date at job start Tue Mar 31 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00141 * 2 1 4 4 C 1.50703 * 109.47097 * 287.92650 * 3 2 1 5 5 C 1.37637 * 120.13209 * 105.03250 * 4 3 2 6 6 C 1.38608 * 120.25203 * 179.97438 * 5 4 3 7 7 C 1.38657 * 120.50172 * 0.02562 * 6 5 4 8 8 C 1.37595 * 120.24857 * 0.02562 * 7 6 5 9 9 C 1.40704 * 120.12551 * 285.03756 * 4 3 2 10 10 C 1.41393 * 120.24484 * 0.02562 * 9 4 3 11 11 H 1.08000 * 120.00008 * 26.64716 * 10 9 4 12 12 C 1.39941 * 119.99903 * 206.64724 * 10 9 4 13 13 N 1.30820 * 120.00331 * 12.97067 * 12 10 9 14 14 Si 1.86800 * 119.99844 * 192.97067 * 12 10 9 15 15 H 1.48505 * 109.47104 * 60.00043 * 14 12 10 16 16 H 1.48498 * 109.46958 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47439 * 299.99926 * 14 12 10 18 18 C 1.46904 * 111.00103 * 123.95099 * 2 1 3 19 19 C 1.50696 * 109.46897 * 66.04202 * 18 2 1 20 20 N 1.31791 * 119.12915 * 269.73254 * 19 18 2 21 21 C 1.32332 * 120.82423 * 179.76298 * 20 19 18 22 22 C 1.38598 * 119.10003 * 0.50396 * 21 20 19 23 23 C 1.38593 * 118.40233 * 359.74910 * 22 21 20 24 24 N 1.31803 * 119.11920 * 90.00605 * 19 18 2 25 25 H 1.08998 * 109.47148 * 62.81933 * 1 2 3 26 26 H 1.08998 * 109.47334 * 182.81743 * 1 2 3 27 27 H 1.09009 * 109.47410 * 302.82347 * 1 2 3 28 28 H 1.09005 * 109.47493 * 167.92790 * 3 2 1 29 29 H 1.09005 * 109.47291 * 47.92234 * 3 2 1 30 30 H 1.07999 * 119.86960 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.74910 * 180.02562 * 6 5 4 32 32 H 1.07999 * 119.87538 * 180.02562 * 7 6 5 33 33 H 1.07996 * 120.13012 * 179.72172 * 8 7 6 34 34 H 0.97001 * 120.00688 * 179.97438 * 13 12 10 35 35 H 1.08994 * 109.47358 * 186.04686 * 18 2 1 36 36 H 1.09001 * 109.46927 * 306.04741 * 18 2 1 37 37 H 1.07995 * 120.45152 * 180.23244 * 21 20 19 38 38 H 1.08003 * 120.80140 * 179.77772 * 22 21 20 39 39 H 1.08004 * 120.45080 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7672 1.9971 -1.3519 5 6 0.7752 2.9364 -1.5199 6 6 0.5635 3.5138 -2.7620 7 6 1.3459 3.1531 -3.8484 8 6 2.3426 2.2155 -3.7040 9 6 2.5672 1.6232 -2.4472 10 6 3.5888 0.6589 -2.2868 11 1 3.5084 -0.0891 -1.5119 12 6 4.7040 0.6738 -3.1320 13 7 4.9329 1.7116 -3.8948 14 14 5.8660 -0.7884 -3.1709 15 1 5.1189 -2.0035 -3.5840 16 1 6.9591 -0.5262 -4.1412 17 1 6.4433 -0.9980 -1.8188 18 6 1.9954 -0.7659 1.1376 19 6 1.6368 -2.2203 0.9730 20 7 0.5045 -2.6634 1.4813 21 6 0.1542 -3.9330 1.3525 22 6 1.0011 -4.8011 0.6816 23 6 2.1854 -4.2994 0.1654 24 7 2.4666 -3.0166 0.3291 25 1 -0.3633 0.4694 -0.9142 26 1 -0.3634 -1.0264 0.0505 27 1 -0.3634 0.5571 0.8636 28 1 3.0639 1.3505 0.2149 29 1 1.4827 1.9575 0.7628 30 1 0.1596 3.2245 -0.6806 31 1 -0.2168 4.2504 -2.8846 32 1 1.1724 3.6098 -4.8116 33 1 2.9479 1.9327 -4.5525 34 1 5.7061 1.7221 -4.4805 35 1 3.0796 -0.6611 1.1757 36 1 1.5611 -0.3871 2.0628 37 1 -0.7768 -4.2888 1.7682 38 1 0.7442 -5.8435 0.5635 39 1 2.8695 -4.9464 -0.3636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235511080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:08 Heat of formation + Delta-G solvation = 63.107261 kcal Electronic energy + Delta-G solvation = -21787.034435 eV Core-core repulsion = 18693.986770 eV Total energy + Delta-G solvation = -3093.047665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.93795 -39.76892 -37.81090 -35.41058 -34.62095 -33.58380 -31.93453 -31.19898 -28.73912 -27.90620 -26.77463 -25.38540 -24.40451 -22.73849 -22.51631 -21.10478 -18.94760 -18.45904 -17.87135 -17.14244 -16.85876 -16.41771 -16.13345 -16.02148 -15.54305 -15.20183 -14.88664 -14.74156 -14.36538 -14.30817 -13.71324 -13.34503 -13.33160 -12.93657 -12.83390 -12.71678 -12.62507 -12.43605 -12.29062 -12.02553 -11.75249 -11.67162 -11.28531 -11.07098 -10.97605 -10.45827 -10.13158 -9.20970 -9.13748 -9.03184 -8.49657 -6.18042 -0.03855 0.24672 1.04997 1.18616 1.39626 1.50754 1.58641 2.27423 2.67219 2.87752 3.01846 3.29898 3.41872 3.81246 3.93089 4.14702 4.26749 4.27805 4.35926 4.41486 4.46022 4.56304 4.62382 4.69884 4.72481 4.79758 4.89001 4.97560 5.06301 5.16242 5.31388 5.46813 5.51462 5.60581 5.85668 6.04362 6.11868 6.19793 6.27296 6.29403 6.37152 6.54268 6.87217 7.13405 7.20331 7.22181 8.45635 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.006518 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.860231 B = 4294.837953 C = 5844.346774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.536 5.536 3 C 0.138 3.862 4 C -0.195 4.195 5 C -0.090 4.090 6 C -0.245 4.245 7 C -0.117 4.117 8 C -0.194 4.194 9 C 0.101 3.899 10 C -0.464 4.464 11 H 0.087 0.913 12 C 0.032 3.968 13 N -0.834 5.834 14 Si 0.970 3.030 15 H -0.268 1.268 16 H -0.272 1.272 17 H -0.261 1.261 18 C 0.123 3.877 19 C 0.316 3.684 20 N -0.533 5.533 21 C 0.134 3.866 22 C -0.216 4.216 23 C 0.127 3.873 24 N -0.537 5.537 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.282 0.718 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.203 0.797 38 H 0.188 0.812 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 -11.766 9.429 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.260 5.260 3 C 0.011 3.989 4 C -0.197 4.197 5 C -0.109 4.109 6 C -0.264 4.264 7 C -0.135 4.135 8 C -0.213 4.213 9 C 0.098 3.902 10 C -0.494 4.494 11 H 0.105 0.895 12 C -0.181 4.181 13 N -0.462 5.462 14 Si 0.793 3.207 15 H -0.192 1.192 16 H -0.197 1.197 17 H -0.185 1.185 18 C -0.006 4.006 19 C 0.048 3.952 20 N -0.249 5.249 21 C -0.031 4.031 22 C -0.237 4.237 23 C -0.038 4.038 24 N -0.252 5.252 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.219 0.781 38 H 0.205 0.795 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.700 -10.945 8.967 15.254 hybrid contribution 0.243 -0.806 -0.001 0.842 sum -5.457 -11.751 8.966 15.756 Atomic orbital electron populations 1.22195 0.87022 1.01040 1.00147 1.61772 1.08209 1.14542 1.41515 1.20497 0.98901 0.86085 0.93380 1.19833 1.02470 1.02515 0.94893 1.20710 0.96822 0.96755 0.96594 1.20668 1.04721 1.07085 0.93915 1.20932 0.96391 0.98164 0.98020 1.21382 0.99895 1.02052 0.98006 1.17724 0.91217 0.90717 0.90532 1.19877 1.02226 1.12651 1.14624 0.89452 1.26674 0.99923 0.98204 0.93294 1.69890 1.26717 1.28892 1.20667 0.85424 0.77372 0.78849 0.79067 1.19233 1.19719 1.18519 1.20725 1.00899 0.85870 0.93102 1.22912 0.86398 0.96732 0.89163 1.68266 1.17312 1.18130 1.21143 1.23918 0.99766 0.87621 0.91796 1.23294 0.95879 1.04511 1.00062 1.23853 0.96068 0.90811 0.93021 1.68263 1.35252 1.06549 1.15095 0.93102 0.92124 0.94706 0.91889 0.94137 0.86962 0.86966 0.88017 0.88489 0.90789 0.89349 0.91528 0.78059 0.79473 0.79408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 9.21 127.69 1.18 2.73 16 2 N -0.54 -20.78 4.04 -931.65 -3.77 -24.54 16 3 C 0.14 5.63 4.30 85.56 0.37 6.00 16 4 C -0.20 -9.32 4.74 -19.40 -0.09 -9.41 16 5 C -0.09 -3.96 9.29 22.22 0.21 -3.76 16 6 C -0.24 -10.91 10.05 22.46 0.23 -10.68 16 7 C -0.12 -5.68 10.02 22.22 0.22 -5.45 16 8 C -0.19 -10.65 8.67 22.73 0.20 -10.45 16 9 C 0.10 5.51 5.57 -21.29 -0.12 5.39 16 10 C -0.46 -25.42 8.22 23.46 0.19 -25.23 16 11 H 0.09 4.77 6.65 -2.91 -0.02 4.75 16 12 C 0.03 1.68 5.23 85.26 0.45 2.13 16 13 N -0.83 -45.45 10.83 21.82 0.24 -45.21 16 14 Si 0.97 41.19 29.58 68.60 2.03 43.22 16 15 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 17 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 18 C 0.12 4.17 5.39 85.55 0.46 4.63 16 19 C 0.32 10.32 6.42 138.75 0.89 11.21 16 20 N -0.53 -14.91 9.09 -187.85 -1.71 -16.62 16 21 C 0.13 2.62 11.31 84.70 0.96 3.58 16 22 C -0.22 -3.65 10.17 22.44 0.23 -3.42 16 23 C 0.13 3.00 11.30 84.70 0.96 3.95 16 24 N -0.54 -17.81 10.34 -187.84 -1.94 -19.75 16 25 H 0.05 1.97 7.27 -2.39 -0.02 1.95 16 26 H 0.06 2.08 6.20 -2.39 -0.01 2.06 16 27 H 0.03 1.09 8.06 -2.38 -0.02 1.07 16 28 H 0.06 2.71 7.30 -2.38 -0.02 2.70 16 29 H 0.04 1.46 7.80 -2.38 -0.02 1.44 16 30 H 0.11 4.21 7.99 -2.91 -0.02 4.19 16 31 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.10 5.64 6.15 -2.91 -0.02 5.62 16 34 H 0.28 14.10 8.30 -92.71 -0.77 13.33 16 35 H 0.09 3.09 7.86 -2.39 -0.02 3.07 16 36 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 37 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.19 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -67.23 327.07 2.22 -65.01 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 1.05 Total: 26.68 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 6.32 Total: -28.79 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -7.18 Total: -106.12 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -67.23 2.22 -65.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.121 kcal (2) G-P(sol) polarization free energy of solvation -67.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds