Wall clock time and date at job start Tue Mar 31 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99920 * 2 1 4 4 C 1.46893 * 111.00528 * 123.95798 * 2 1 3 5 5 C 1.50702 * 109.47286 * 169.99704 * 4 2 1 6 6 C 1.38430 * 119.92153 * 269.97752 * 5 4 2 7 7 C 1.38385 * 120.30613 * 180.02562 * 6 5 4 8 8 C 1.37935 * 120.15517 * 359.97438 * 7 6 5 9 9 C 1.39673 * 119.84219 * 359.79200 * 8 7 6 10 10 C 1.47795 * 120.15269 * 180.24935 * 9 8 7 11 11 N 1.32860 * 120.24973 * 224.54741 * 10 9 8 12 12 C 1.32001 * 120.07746 * 179.97438 * 11 10 9 13 13 C 1.39196 * 120.59205 * 359.97438 * 12 11 10 14 14 N 1.31610 * 120.50220 * 0.02562 * 13 12 11 15 15 C 1.33970 * 119.89484 * 359.72647 * 14 13 12 16 16 C 1.40802 * 120.28441 * 180.27519 * 15 14 13 17 17 H 1.08002 * 120.00185 * 190.49365 * 16 15 14 18 18 C 1.40177 * 119.99801 * 10.49251 * 16 15 14 19 19 N 1.30678 * 120.00027 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99879 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47125 * 60.00216 * 20 18 16 22 22 H 1.48503 * 109.47216 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47230 * 300.00326 * 20 18 16 24 24 C 1.37887 * 119.92178 * 90.00472 * 5 4 2 25 25 H 1.09002 * 109.46587 * 296.03695 * 1 2 3 26 26 H 1.08998 * 109.47138 * 56.03804 * 1 2 3 27 27 H 1.08995 * 109.47063 * 176.04565 * 1 2 3 28 28 H 1.09002 * 109.47035 * 183.95516 * 3 2 1 29 29 H 1.08997 * 109.47532 * 303.96174 * 3 2 1 30 30 H 1.08997 * 109.46779 * 63.96062 * 3 2 1 31 31 H 1.09013 * 109.46901 * 50.00019 * 4 2 1 32 32 H 1.08999 * 109.47363 * 290.00383 * 4 2 1 33 33 H 1.07998 * 119.84840 * 0.04967 * 6 5 4 34 34 H 1.08003 * 119.92003 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.07934 * 180.02562 * 8 7 6 36 36 H 1.08002 * 119.70304 * 179.97438 * 12 11 10 37 37 H 1.07998 * 119.75000 * 180.02562 * 13 12 11 38 38 H 0.96999 * 119.99930 * 180.02562 * 19 18 16 39 39 H 1.08002 * 120.07993 * 359.95096 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9956 -0.7660 1.1374 5 6 3.4819 -0.9525 0.9726 6 6 3.9684 -2.0600 0.2994 7 6 5.3317 -2.2394 0.1439 8 6 6.2156 -1.3142 0.6589 9 6 5.7315 -0.1920 1.3350 10 6 6.6723 0.8065 1.8849 11 7 6.4942 1.2908 3.1092 12 6 7.3368 2.1821 3.5971 13 6 8.4178 2.6239 2.8397 14 7 8.6161 2.1596 1.6243 15 6 7.7761 1.2507 1.1114 16 6 7.9838 0.7442 -0.1859 17 1 7.2203 0.1457 -0.6606 18 6 9.1815 1.0167 -0.8612 19 7 10.1055 1.7404 -0.2866 20 14 9.4574 0.3440 -2.5819 21 1 8.4060 0.8655 -3.4917 22 1 10.7928 0.7706 -3.0719 23 1 9.3930 -1.1392 -2.5498 24 6 4.3540 -0.0199 1.4931 25 1 -0.3632 0.4511 0.9234 26 1 -0.3633 0.5741 -0.8523 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3433 -0.0709 29 1 1.5897 1.9165 -0.8523 30 1 1.7045 1.8723 0.9233 31 1 1.5090 -1.7408 1.1754 32 1 1.7976 -0.2249 2.0627 33 1 3.2808 -2.7871 -0.1066 34 1 5.7044 -3.1055 -0.3828 35 1 7.2793 -1.4553 0.5365 36 1 7.1860 2.5720 4.5929 37 1 9.0990 3.3532 3.2525 38 1 10.9342 1.9292 -0.7541 39 1 3.9731 0.8438 2.0178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236413796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:05 Heat of formation + Delta-G solvation = 69.658172 kcal Electronic energy + Delta-G solvation = -21647.166940 eV Core-core repulsion = 18554.403344 eV Total energy + Delta-G solvation = -3092.763596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.42375 -38.47387 -36.68664 -34.19469 -32.57233 -31.60475 -30.78914 -28.91623 -27.45290 -26.50433 -26.06841 -23.39169 -22.33778 -21.84077 -21.04797 -19.81928 -17.71379 -16.22150 -16.07969 -15.38209 -15.32445 -15.12865 -14.92822 -14.52410 -14.15801 -14.03033 -13.39517 -12.89457 -12.72773 -12.44165 -12.23546 -12.13026 -11.86639 -11.74246 -11.56982 -11.51075 -11.43945 -11.37368 -10.83174 -10.53623 -10.37362 -10.21155 -9.85457 -9.60412 -9.23142 -8.40606 -8.36159 -8.02429 -7.60920 -7.38144 -6.63696 -4.75080 1.80007 2.02533 2.55189 2.96060 2.97238 3.00077 3.15313 3.77510 4.06167 4.52265 4.62259 5.06316 5.18190 5.27790 5.39479 5.43493 5.56747 5.61684 5.70254 5.72266 5.76450 5.79083 5.83068 5.96457 6.13093 6.17371 6.19618 6.24464 6.43987 6.59723 6.68840 6.79963 6.89911 7.01297 7.03564 7.08936 7.17556 7.23746 7.45450 7.60006 7.69533 7.97859 8.30577 8.56663 9.15923 9.74325 10.00902 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.015207 B = 0.005724 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.842608 B = 4890.445411 C = 5827.832380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C 0.020 3.980 4 C 0.099 3.901 5 C -0.092 4.092 6 C -0.117 4.117 7 C -0.128 4.128 8 C -0.100 4.100 9 C 0.027 3.973 10 C -0.030 4.030 11 N -0.412 5.412 12 C -0.119 4.119 13 C 0.087 3.913 14 N -0.454 5.454 15 C 0.222 3.778 16 C -0.404 4.404 17 H 0.101 0.899 18 C 0.066 3.934 19 N -0.707 5.707 20 Si 0.910 3.090 21 H -0.260 1.260 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.100 4.100 25 H 0.022 0.978 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.280 0.720 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.917 -3.875 -1.375 10.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.128 4.128 4 C -0.028 4.028 5 C -0.092 4.092 6 C -0.136 4.136 7 C -0.147 4.147 8 C -0.120 4.120 9 C 0.025 3.975 10 C -0.177 4.177 11 N -0.125 5.125 12 C -0.280 4.280 13 C -0.084 4.084 14 N -0.171 5.171 15 C 0.098 3.902 16 C -0.434 4.434 17 H 0.119 0.881 18 C -0.162 4.162 19 N -0.326 5.326 20 Si 0.733 3.267 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.183 1.183 24 C -0.120 4.120 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.091 0.909 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.510 -3.977 -1.851 10.473 hybrid contribution 0.028 0.387 0.161 0.420 sum -9.482 -3.590 -1.690 10.279 Atomic orbital electron populations 1.22377 0.87792 1.01927 1.00255 1.62002 1.07045 1.14334 1.43108 1.22480 1.02334 0.88136 0.99864 1.21005 0.92317 0.98147 0.91314 1.19417 0.93762 0.95813 1.00216 1.20797 0.95072 0.97722 1.00059 1.20948 0.93195 0.99339 1.01170 1.21455 1.00466 0.92868 0.97183 1.18299 0.91492 0.92495 0.95211 1.20177 1.00300 1.04230 0.93009 1.67691 1.26214 1.06704 1.11857 1.22548 0.98633 1.05104 1.01741 1.23526 0.95234 0.97047 0.92576 1.69520 1.26935 1.10617 1.09984 1.19219 0.87654 0.89538 0.93829 1.19868 1.00831 1.25369 0.97335 0.88120 1.26220 0.95711 0.94079 1.00168 1.70021 1.04221 1.22058 1.36346 0.86314 0.78659 0.80579 0.81180 1.18425 1.19936 1.18340 1.21061 0.92450 0.98518 0.99927 0.95938 0.91523 0.91555 0.90155 0.91759 0.95833 0.90420 0.94292 0.87103 0.86706 0.85086 0.85500 0.85250 0.90860 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.57 60.07 0.57 0.84 16 2 N -0.54 -7.40 5.01 -252.72 -1.27 -8.66 16 3 C 0.02 0.28 9.13 60.07 0.55 0.83 16 4 C 0.10 1.38 5.11 -4.98 -0.03 1.36 16 5 C -0.09 -1.54 4.88 -104.68 -0.51 -2.05 16 6 C -0.12 -1.89 9.70 -39.46 -0.38 -2.27 16 7 C -0.13 -2.18 10.03 -39.64 -0.40 -2.58 16 8 C -0.10 -2.02 7.54 -39.16 -0.30 -2.32 16 9 C 0.03 0.58 5.27 -104.90 -0.55 0.03 16 10 C -0.03 -0.76 6.41 -82.11 -0.53 -1.29 16 11 N -0.41 -10.15 10.31 -8.97 -0.09 -10.24 16 12 C -0.12 -2.73 11.22 -17.12 -0.19 -2.92 16 13 C 0.09 2.06 11.22 -17.29 -0.19 1.87 16 14 N -0.45 -12.17 8.12 -10.73 -0.09 -12.26 16 15 C 0.22 5.90 6.51 -84.56 -0.55 5.35 16 16 C -0.40 -10.17 7.46 -37.89 -0.28 -10.45 16 17 H 0.10 2.40 5.38 -52.49 -0.28 2.12 16 18 C 0.07 1.58 5.49 -17.31 -0.10 1.48 16 19 N -0.71 -17.79 11.55 55.56 0.64 -17.14 16 20 Si 0.91 17.63 29.56 -169.99 -5.03 12.60 16 21 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 24 C -0.10 -1.95 7.59 -39.16 -0.30 -2.25 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 27 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 28 H 0.08 1.33 6.16 -51.93 -0.32 1.01 16 29 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.95 8.01 -51.92 -0.42 0.53 16 32 H 0.04 0.54 8.06 -51.93 -0.42 0.12 16 33 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 35 H 0.13 2.73 6.75 -52.49 -0.35 2.37 16 36 H 0.13 2.49 8.06 -52.49 -0.42 2.07 16 37 H 0.13 2.60 8.06 -52.49 -0.42 2.18 16 38 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 39 H 0.11 2.22 8.03 -52.49 -0.42 1.80 16 LS Contribution 326.56 15.07 4.92 4.92 Total: -1.00 -28.80 326.56 -9.24 -38.03 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.15 Total: 7.13 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -3.18 Total: -14.38 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.80 Total: -48.31 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.80 -9.24 -38.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236413796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.692 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds