Wall clock time and date at job start Tue Mar 31 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99920 * 2 1 4 4 C 1.46893 * 111.00528 * 123.95798 * 2 1 3 5 5 C 1.50702 * 109.47286 * 169.99704 * 4 2 1 6 6 C 1.38430 * 119.92153 * 269.97752 * 5 4 2 7 7 C 1.38385 * 120.30613 * 180.02562 * 6 5 4 8 8 C 1.37935 * 120.15517 * 359.97438 * 7 6 5 9 9 C 1.39673 * 119.84219 * 359.79200 * 8 7 6 10 10 C 1.47795 * 120.15269 * 180.24935 * 9 8 7 11 11 N 1.32860 * 120.24973 * 224.54741 * 10 9 8 12 12 C 1.32001 * 120.07746 * 179.97438 * 11 10 9 13 13 C 1.39196 * 120.59205 * 359.97438 * 12 11 10 14 14 N 1.31610 * 120.50220 * 0.02562 * 13 12 11 15 15 C 1.33970 * 119.89484 * 359.72647 * 14 13 12 16 16 C 1.40802 * 120.28441 * 180.27519 * 15 14 13 17 17 H 1.08002 * 120.00185 * 190.49365 * 16 15 14 18 18 C 1.40177 * 119.99801 * 10.49251 * 16 15 14 19 19 N 1.30678 * 120.00027 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99879 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47125 * 60.00216 * 20 18 16 22 22 H 1.48503 * 109.47216 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47230 * 300.00326 * 20 18 16 24 24 C 1.37887 * 119.92178 * 90.00472 * 5 4 2 25 25 H 1.09002 * 109.46587 * 296.03695 * 1 2 3 26 26 H 1.08998 * 109.47138 * 56.03804 * 1 2 3 27 27 H 1.08995 * 109.47063 * 176.04565 * 1 2 3 28 28 H 1.09002 * 109.47035 * 183.95516 * 3 2 1 29 29 H 1.08997 * 109.47532 * 303.96174 * 3 2 1 30 30 H 1.08997 * 109.46779 * 63.96062 * 3 2 1 31 31 H 1.09013 * 109.46901 * 50.00019 * 4 2 1 32 32 H 1.08999 * 109.47363 * 290.00383 * 4 2 1 33 33 H 1.07998 * 119.84840 * 0.04967 * 6 5 4 34 34 H 1.08003 * 119.92003 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.07934 * 180.02562 * 8 7 6 36 36 H 1.08002 * 119.70304 * 179.97438 * 12 11 10 37 37 H 1.07998 * 119.75000 * 180.02562 * 13 12 11 38 38 H 0.96999 * 119.99930 * 180.02562 * 19 18 16 39 39 H 1.08002 * 120.07993 * 359.95096 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9956 -0.7660 1.1374 5 6 3.4819 -0.9525 0.9726 6 6 3.9684 -2.0600 0.2994 7 6 5.3317 -2.2394 0.1439 8 6 6.2156 -1.3142 0.6589 9 6 5.7315 -0.1920 1.3350 10 6 6.6723 0.8065 1.8849 11 7 6.4942 1.2908 3.1092 12 6 7.3368 2.1821 3.5971 13 6 8.4178 2.6239 2.8397 14 7 8.6161 2.1596 1.6243 15 6 7.7761 1.2507 1.1114 16 6 7.9838 0.7442 -0.1859 17 1 7.2203 0.1457 -0.6606 18 6 9.1815 1.0167 -0.8612 19 7 10.1055 1.7404 -0.2866 20 14 9.4574 0.3440 -2.5819 21 1 8.4060 0.8655 -3.4917 22 1 10.7928 0.7706 -3.0719 23 1 9.3930 -1.1392 -2.5498 24 6 4.3540 -0.0199 1.4931 25 1 -0.3632 0.4511 0.9234 26 1 -0.3633 0.5741 -0.8523 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3433 -0.0709 29 1 1.5897 1.9165 -0.8523 30 1 1.7045 1.8723 0.9233 31 1 1.5090 -1.7408 1.1754 32 1 1.7976 -0.2249 2.0627 33 1 3.2808 -2.7871 -0.1066 34 1 5.7044 -3.1055 -0.3828 35 1 7.2793 -1.4553 0.5365 36 1 7.1860 2.5720 4.5929 37 1 9.0990 3.3532 3.2525 38 1 10.9342 1.9292 -0.7541 39 1 3.9731 0.8438 2.0178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236413796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:04 Heat of formation + Delta-G solvation = 52.004890 kcal Electronic energy + Delta-G solvation = -21647.932443 eV Core-core repulsion = 18554.403344 eV Total energy + Delta-G solvation = -3093.529100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.10730 -39.96073 -37.85861 -36.02042 -34.30250 -33.27333 -32.21649 -30.55986 -28.47504 -28.09259 -27.48659 -25.08417 -23.94022 -23.22490 -22.52276 -21.25323 -19.56648 -17.92791 -17.63293 -16.94022 -16.57588 -16.38158 -16.32417 -15.98845 -15.64362 -15.41110 -14.83976 -14.62130 -14.35176 -13.80600 -13.49756 -13.41055 -13.26884 -13.19706 -12.99670 -12.87850 -12.66417 -12.56937 -12.30572 -12.05663 -11.84511 -11.78996 -11.58068 -11.49276 -11.05171 -10.06999 -9.62024 -9.43589 -9.24609 -9.08805 -8.44616 -6.63276 0.20020 0.60053 0.81091 1.22308 1.38137 1.50899 1.53141 2.16050 2.72540 2.86592 3.31850 3.73244 3.77293 3.92217 4.08668 4.16915 4.28599 4.30943 4.40295 4.44996 4.49019 4.57447 4.62266 4.70900 4.71646 4.79962 4.85242 4.97872 5.03833 5.04598 5.09373 5.11764 5.27523 5.35171 5.67473 5.75794 5.79707 5.94303 6.02399 6.12181 6.12873 6.26794 6.46584 6.70079 7.29383 7.86581 8.24919 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.015207 B = 0.005724 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.842608 B = 4890.445411 C = 5827.832380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.551 5.551 3 C 0.023 3.977 4 C 0.102 3.898 5 C -0.086 4.086 6 C -0.106 4.106 7 C -0.121 4.121 8 C -0.116 4.116 9 C -0.008 4.008 10 C -0.041 4.041 11 N -0.431 5.431 12 C -0.123 4.123 13 C 0.074 3.926 14 N -0.490 5.490 15 C 0.190 3.810 16 C -0.423 4.423 17 H 0.106 0.894 18 C 0.024 3.976 19 N -0.744 5.744 20 Si 0.983 3.017 21 H -0.258 1.258 22 H -0.265 1.265 23 H -0.248 1.248 24 C -0.106 4.106 25 H 0.027 0.973 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.023 0.977 31 H 0.105 0.895 32 H 0.036 0.964 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.114 0.886 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.287 0.713 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.891 -5.679 -2.745 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.125 4.125 4 C -0.025 4.025 5 C -0.087 4.087 6 C -0.125 4.125 7 C -0.139 4.139 8 C -0.135 4.135 9 C -0.009 4.009 10 C -0.188 4.188 11 N -0.143 5.143 12 C -0.284 4.284 13 C -0.095 4.095 14 N -0.207 5.207 15 C 0.065 3.935 16 C -0.453 4.453 17 H 0.124 0.876 18 C -0.200 4.200 19 N -0.365 5.365 20 Si 0.802 3.198 21 H -0.182 1.182 22 H -0.189 1.189 23 H -0.172 1.172 24 C -0.126 4.126 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.042 0.958 31 H 0.123 0.877 32 H 0.054 0.946 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.132 0.868 36 H 0.178 0.822 37 H 0.177 0.823 38 H 0.098 0.902 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.500 -5.773 -3.188 13.257 hybrid contribution 0.534 0.948 0.671 1.278 sum -10.965 -4.825 -2.517 12.241 Atomic orbital electron populations 1.22462 0.85516 1.03358 1.00958 1.61998 1.09072 1.13625 1.42792 1.22394 1.00449 0.89106 1.00549 1.21035 0.90406 0.99653 0.91440 1.19746 0.95156 0.94999 0.98791 1.21231 0.95220 0.97631 0.98408 1.21285 0.93308 0.99227 1.00064 1.21396 1.00269 0.93587 0.98280 1.18389 0.92079 0.93134 0.97342 1.20649 1.00579 1.04573 0.92955 1.67774 1.26951 1.07575 1.12048 1.23089 0.97972 1.04405 1.02902 1.24025 0.96027 0.97448 0.92044 1.69467 1.27997 1.11681 1.11533 1.19674 0.88591 0.90271 0.94952 1.20138 1.01798 1.25924 0.97428 0.87626 1.27144 0.94808 0.93900 1.04157 1.70100 1.04892 1.23223 1.38275 0.85228 0.78794 0.80266 0.75541 1.18234 1.18881 1.17178 1.20988 0.91956 0.99032 1.00627 0.95449 0.90568 0.89810 0.93279 0.90327 0.95820 0.87662 0.94594 0.83330 0.83471 0.86830 0.82249 0.82312 0.90191 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.57 127.69 1.22 1.66 16 2 N -0.55 -13.63 5.01 -953.47 -4.78 -18.40 16 3 C 0.02 0.64 9.13 127.69 1.17 1.81 16 4 C 0.10 2.57 5.11 85.56 0.44 3.00 16 5 C -0.09 -2.75 4.88 -19.90 -0.10 -2.85 16 6 C -0.11 -3.07 9.70 22.35 0.22 -2.86 16 7 C -0.12 -3.85 10.03 22.23 0.22 -3.63 16 8 C -0.12 -4.72 7.54 22.54 0.17 -4.55 16 9 C -0.01 -0.36 5.27 -20.05 -0.11 -0.47 16 10 C -0.04 -2.14 6.41 42.43 0.27 -1.87 16 11 N -0.43 -21.97 10.31 -182.30 -1.88 -23.85 16 12 C -0.12 -5.76 11.22 84.90 0.95 -4.80 16 13 C 0.07 3.61 11.22 84.96 0.95 4.56 16 14 N -0.49 -27.36 8.12 -187.85 -1.53 -28.88 16 15 C 0.19 10.56 6.51 40.36 0.26 10.82 16 16 C -0.42 -22.12 7.46 23.37 0.17 -21.94 16 17 H 0.11 5.22 5.38 -2.91 -0.02 5.21 16 18 C 0.02 1.17 5.49 85.34 0.47 1.64 16 19 N -0.74 -38.58 11.55 21.86 0.25 -38.33 16 20 Si 0.98 36.18 29.56 68.60 2.03 38.21 16 21 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 22 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 23 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 24 C -0.11 -4.22 7.59 22.54 0.17 -4.05 16 25 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 27 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 28 H 0.05 1.64 6.16 -2.39 -0.01 1.63 16 29 H 0.08 1.86 8.12 -2.39 -0.02 1.84 16 30 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.11 2.10 8.01 -2.38 -0.02 2.08 16 32 H 0.04 0.93 8.06 -2.39 -0.02 0.91 16 33 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 34 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.11 4.92 6.75 -2.91 -0.02 4.90 16 36 H 0.16 6.18 8.06 -2.91 -0.02 6.16 16 37 H 0.16 6.45 8.06 -2.91 -0.02 6.43 16 38 H 0.29 13.35 8.29 -92.71 -0.77 12.58 16 39 H 0.10 4.05 8.03 -2.91 -0.02 4.03 16 Total: -1.00 -65.41 326.56 1.64 -63.78 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 1.05 Total: 31.02 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 6.49 Total: -23.53 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -7.93 Total: -109.47 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.21 kcal Total: -65.41 1.64 -63.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236413796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.780 kcal (2) G-P(sol) polarization free energy of solvation -65.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds