Wall clock time and date at job start Tue Mar 31 2020 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46958 * 2 1 4 4 N 1.46908 * 109.46941 * 174.97587 * 3 2 1 5 5 C 1.46907 * 110.99593 * 199.57652 * 4 3 2 6 6 C 1.50696 * 109.47087 * 66.04723 * 5 4 3 7 7 H 1.08007 * 120.00037 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00118 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00153 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00206 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47329 * 89.99789 * 10 8 6 12 12 H 1.48498 * 109.46982 * 209.99923 * 10 8 6 13 13 H 1.48504 * 109.46781 * 329.99968 * 10 8 6 14 14 C 1.46897 * 110.99963 * 75.62561 * 4 3 2 15 15 C 1.50706 * 109.47040 * 194.69877 * 14 4 3 16 16 C 1.38250 * 119.96572 * 257.08840 * 15 14 4 17 17 C 1.38217 * 120.06944 * 180.02562 * 16 15 14 18 18 C 1.38412 * 119.99876 * 0.02562 * 17 16 15 19 19 F 1.35104 * 120.03265 * 180.02562 * 18 17 16 20 20 C 1.38648 * 119.93110 * 0.26907 * 18 17 16 21 21 F 1.35102 * 120.03524 * 179.72279 * 20 18 17 22 22 C 1.38217 * 119.95899 * 77.10474 * 15 14 4 23 23 C 1.50696 * 120.00428 * 359.95879 * 22 15 14 24 24 H 1.08998 * 109.47343 * 64.89391 * 1 2 3 25 25 H 1.09000 * 109.46642 * 184.89371 * 1 2 3 26 26 H 1.09000 * 109.46697 * 304.88573 * 1 2 3 27 27 H 1.09008 * 109.46873 * 240.00184 * 2 1 3 28 28 H 1.08997 * 109.47511 * 120.00556 * 2 1 3 29 29 H 1.08996 * 109.47712 * 54.97756 * 3 2 1 30 30 H 1.08997 * 109.47490 * 294.96981 * 3 2 1 31 31 H 1.09006 * 109.46595 * 186.04373 * 5 4 3 32 32 H 1.08992 * 109.47138 * 306.04403 * 5 4 3 33 33 H 0.97000 * 120.00346 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47354 * 74.70110 * 14 4 3 35 35 H 1.08999 * 109.47144 * 314.69580 * 14 4 3 36 36 H 1.07997 * 119.96618 * 359.97438 * 16 15 14 37 37 H 1.07998 * 120.00107 * 180.02562 * 17 16 15 38 38 H 1.08998 * 109.47071 * 93.32608 * 23 22 15 39 39 H 1.09001 * 109.47456 * 213.33322 * 23 22 15 40 40 H 1.09007 * 109.46858 * 333.33080 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5040 1.4442 0.1213 5 6 3.9922 2.7500 0.5848 6 6 3.5154 2.9933 1.9935 7 1 2.9099 2.2523 2.4943 8 6 3.8522 4.1619 2.6431 9 7 4.5899 5.0640 2.0336 10 14 3.2618 4.4632 4.3896 11 1 4.2635 3.9331 5.3492 12 1 3.0895 5.9217 4.6091 13 1 1.9630 3.7742 4.5988 14 6 4.1379 1.0658 -1.1487 15 6 5.5863 0.7276 -0.9060 16 6 6.5732 1.6356 -1.2421 17 6 7.9023 1.3274 -1.0209 18 6 8.2464 0.1084 -0.4628 19 9 9.5453 -0.1933 -0.2458 20 6 7.2571 -0.8047 -0.1314 21 9 7.5910 -1.9974 0.4082 22 6 5.9266 -0.4903 -0.3479 23 6 4.8496 -1.4786 0.0184 24 1 -0.3634 0.4360 -0.9305 25 1 -0.3632 -1.0239 0.0877 26 1 -0.3633 0.5878 0.8430 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6051 1.9817 0.8415 30 1 1.7521 1.9297 -0.9316 31 1 5.0820 2.7588 0.5634 32 1 3.6096 3.5338 -0.0688 33 1 4.8265 5.8863 2.4905 34 1 4.0717 1.8976 -1.8499 35 1 3.6270 0.1977 -1.5653 36 1 6.3053 2.5864 -1.6787 37 1 8.6722 2.0377 -1.2835 38 1 4.6915 -2.1677 -0.8111 39 1 5.1553 -2.0382 0.9025 40 1 3.9228 -0.9447 0.2288 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237157662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:36 Heat of formation + Delta-G solvation = -77.563985 kcal Electronic energy + Delta-G solvation = -22771.237766 eV Core-core repulsion = 19221.400952 eV Total energy + Delta-G solvation = -3549.836814 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.20374 -48.28635 -39.34242 -36.84879 -33.19954 -32.84123 -32.16386 -30.41465 -27.49727 -27.06999 -25.69299 -24.06095 -22.04934 -21.70121 -20.95540 -19.86488 -17.45132 -17.08482 -16.53468 -16.36107 -16.08478 -15.17306 -14.77075 -14.64373 -14.55830 -14.20463 -13.97655 -13.70521 -13.38583 -13.17762 -12.93536 -12.81670 -12.32862 -12.02136 -11.87592 -11.66196 -11.49965 -11.34683 -11.29901 -11.05621 -10.88217 -10.70109 -10.63990 -10.36314 -10.07856 -9.79944 -9.23382 -8.53368 -8.45130 -8.31755 -7.34754 -6.05674 -4.06225 1.19650 1.28156 3.30417 3.36865 3.39342 3.58120 4.04444 4.40594 4.57991 4.78214 4.80572 5.04646 5.23747 5.26959 5.30631 5.36986 5.49667 5.60805 5.72588 5.79410 5.84354 5.87852 5.97223 6.02838 6.09644 6.16359 6.20323 6.24800 6.37472 6.39472 6.50276 6.64877 6.71114 6.78964 7.04413 7.24943 7.28606 7.76096 8.03756 8.13648 8.48419 9.00827 9.57829 11.05143 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.006233 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.082552 B = 4491.095245 C = 5815.662155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.060 3.940 4 N -0.531 5.531 5 C 0.191 3.809 6 C -0.507 4.507 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.089 3.911 15 C -0.044 4.044 16 C -0.083 4.083 17 C -0.133 4.133 18 C 0.060 3.940 19 F -0.137 7.137 20 C 0.056 3.944 21 F -0.134 7.134 22 C -0.065 4.065 23 C -0.122 4.122 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.020 0.980 31 H 0.035 0.965 32 H -0.010 1.010 33 H 0.261 0.739 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 -9.851 -8.269 12.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.068 4.068 4 N -0.255 5.255 5 C 0.067 3.933 6 C -0.545 4.545 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.039 4.039 15 C -0.045 4.045 16 C -0.101 4.101 17 C -0.152 4.152 18 C 0.040 3.960 19 F -0.115 7.115 20 C 0.036 3.964 21 F -0.112 7.112 22 C -0.067 4.067 23 C -0.178 4.178 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.008 0.992 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.199 -10.068 -7.854 12.770 hybrid contribution 0.082 0.766 0.599 0.976 sum 0.281 -9.302 -7.255 11.800 Atomic orbital electron populations 1.21730 0.96441 1.00951 1.01586 1.21610 0.94694 0.97944 1.01683 1.22078 0.88624 0.95423 1.00707 1.62158 1.04573 1.34569 1.24182 1.19785 0.96274 0.82131 0.95158 1.21134 1.32322 1.02551 0.98521 0.91866 1.24958 0.95326 0.96080 0.98107 1.69942 1.37539 1.08779 1.37410 0.86548 0.79177 0.77148 0.84844 1.20670 1.21352 1.19859 1.21038 0.90017 0.99891 0.92982 1.19665 0.96311 0.92068 0.96450 1.21032 0.91152 0.99247 0.98699 1.20951 0.97980 0.94911 1.01311 1.17612 0.77692 0.95566 1.05155 1.91482 1.33503 1.93484 1.93056 1.17474 0.92752 0.82694 1.03504 1.91463 1.93041 1.42922 1.83806 1.19610 0.91764 0.96789 0.98532 1.20913 0.98550 0.97210 1.01141 0.93305 0.93273 0.92578 0.93003 0.91271 0.89290 0.96184 0.94653 0.99208 0.92960 0.94372 0.90555 0.84445 0.84113 0.91507 0.91499 0.87934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.12 -1.69 4.88 -26.73 -0.13 -1.82 16 3 C 0.06 1.04 4.81 -3.82 -0.02 1.02 16 4 N -0.53 -10.26 3.57 -237.51 -0.85 -11.11 16 5 C 0.19 4.65 4.57 -4.97 -0.02 4.62 16 6 C -0.51 -13.64 8.23 -34.44 -0.28 -13.93 16 7 H 0.06 1.69 7.31 -52.48 -0.38 1.31 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 10 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.09 1.43 4.04 -4.97 -0.02 1.41 16 15 C -0.04 -0.72 4.69 -104.62 -0.49 -1.21 16 16 C -0.08 -1.29 8.74 -39.58 -0.35 -1.63 16 17 C -0.13 -1.98 10.02 -39.52 -0.40 -2.38 16 18 C 0.06 0.98 7.31 -39.37 -0.29 0.69 16 19 F -0.14 -2.24 17.18 2.25 0.04 -2.20 16 20 C 0.06 0.93 7.25 -39.36 -0.29 0.64 16 21 F -0.13 -2.23 16.46 2.25 0.04 -2.19 16 22 C -0.07 -1.06 5.88 -104.57 -0.62 -1.67 16 23 C -0.12 -1.72 9.16 36.00 0.33 -1.39 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.65 6.88 -51.92 -0.36 0.29 16 28 H 0.07 1.02 7.66 -51.93 -0.40 0.62 16 29 H 0.09 1.77 6.58 -51.93 -0.34 1.43 16 30 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 31 H 0.04 0.92 6.48 -51.93 -0.34 0.59 16 32 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.04 0.61 7.90 -51.93 -0.41 0.20 16 35 H 0.08 1.06 5.87 -51.93 -0.30 0.75 16 36 H 0.14 1.99 8.01 -52.49 -0.42 1.57 16 37 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.94 7.75 -51.93 -0.40 0.54 16 40 H 0.10 1.51 4.36 -51.93 -0.23 1.29 16 LS Contribution 330.16 15.07 4.98 4.98 Total: -1.00 -28.78 330.16 -8.04 -36.83 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.67 Total: -1.83 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -2.30 Total: -15.60 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.11 Total: -36.31 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.08 Total: -4.39 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.78 -8.04 -36.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237157662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.736 kcal (2) G-P(sol) polarization free energy of solvation -28.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds