Wall clock time and date at job start Tue Mar 31 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46958 * 2 1 4 4 N 1.46908 * 109.46941 * 174.97587 * 3 2 1 5 5 C 1.46907 * 110.99593 * 199.57652 * 4 3 2 6 6 C 1.50696 * 109.47087 * 66.04723 * 5 4 3 7 7 H 1.08007 * 120.00037 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00118 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00153 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00206 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47329 * 89.99789 * 10 8 6 12 12 H 1.48498 * 109.46982 * 209.99923 * 10 8 6 13 13 H 1.48504 * 109.46781 * 329.99968 * 10 8 6 14 14 C 1.46897 * 110.99963 * 75.62561 * 4 3 2 15 15 C 1.50706 * 109.47040 * 194.69877 * 14 4 3 16 16 C 1.38250 * 119.96572 * 257.08840 * 15 14 4 17 17 C 1.38217 * 120.06944 * 180.02562 * 16 15 14 18 18 C 1.38412 * 119.99876 * 0.02562 * 17 16 15 19 19 F 1.35104 * 120.03265 * 180.02562 * 18 17 16 20 20 C 1.38648 * 119.93110 * 0.26907 * 18 17 16 21 21 F 1.35102 * 120.03524 * 179.72279 * 20 18 17 22 22 C 1.38217 * 119.95899 * 77.10474 * 15 14 4 23 23 C 1.50696 * 120.00428 * 359.95879 * 22 15 14 24 24 H 1.08998 * 109.47343 * 64.89391 * 1 2 3 25 25 H 1.09000 * 109.46642 * 184.89371 * 1 2 3 26 26 H 1.09000 * 109.46697 * 304.88573 * 1 2 3 27 27 H 1.09008 * 109.46873 * 240.00184 * 2 1 3 28 28 H 1.08997 * 109.47511 * 120.00556 * 2 1 3 29 29 H 1.08996 * 109.47712 * 54.97756 * 3 2 1 30 30 H 1.08997 * 109.47490 * 294.96981 * 3 2 1 31 31 H 1.09006 * 109.46595 * 186.04373 * 5 4 3 32 32 H 1.08992 * 109.47138 * 306.04403 * 5 4 3 33 33 H 0.97000 * 120.00346 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47354 * 74.70110 * 14 4 3 35 35 H 1.08999 * 109.47144 * 314.69580 * 14 4 3 36 36 H 1.07997 * 119.96618 * 359.97438 * 16 15 14 37 37 H 1.07998 * 120.00107 * 180.02562 * 17 16 15 38 38 H 1.08998 * 109.47071 * 93.32608 * 23 22 15 39 39 H 1.09001 * 109.47456 * 213.33322 * 23 22 15 40 40 H 1.09007 * 109.46858 * 333.33080 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5040 1.4442 0.1213 5 6 3.9922 2.7500 0.5848 6 6 3.5154 2.9933 1.9935 7 1 2.9099 2.2523 2.4943 8 6 3.8522 4.1619 2.6431 9 7 4.5899 5.0640 2.0336 10 14 3.2618 4.4632 4.3896 11 1 4.2635 3.9331 5.3492 12 1 3.0895 5.9217 4.6091 13 1 1.9630 3.7742 4.5988 14 6 4.1379 1.0658 -1.1487 15 6 5.5863 0.7276 -0.9060 16 6 6.5732 1.6356 -1.2421 17 6 7.9023 1.3274 -1.0209 18 6 8.2464 0.1084 -0.4628 19 9 9.5453 -0.1933 -0.2458 20 6 7.2571 -0.8047 -0.1314 21 9 7.5910 -1.9974 0.4082 22 6 5.9266 -0.4903 -0.3479 23 6 4.8496 -1.4786 0.0184 24 1 -0.3634 0.4360 -0.9305 25 1 -0.3632 -1.0239 0.0877 26 1 -0.3633 0.5878 0.8430 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6051 1.9817 0.8415 30 1 1.7521 1.9297 -0.9316 31 1 5.0820 2.7588 0.5634 32 1 3.6096 3.5338 -0.0688 33 1 4.8265 5.8863 2.4905 34 1 4.0717 1.8976 -1.8499 35 1 3.6270 0.1977 -1.5653 36 1 6.3053 2.5864 -1.6787 37 1 8.6722 2.0377 -1.2835 38 1 4.6915 -2.1677 -0.8111 39 1 5.1553 -2.0382 0.9025 40 1 3.9228 -0.9447 0.2288 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237157662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:35 Heat of formation + Delta-G solvation = -91.873959 kcal Electronic energy + Delta-G solvation = -22771.858293 eV Core-core repulsion = 19221.400952 eV Total energy + Delta-G solvation = -3550.457341 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.48797 -49.57377 -40.62610 -38.29672 -34.93196 -34.15493 -33.57909 -31.78051 -29.23533 -28.32622 -26.94062 -25.74042 -23.31122 -23.22409 -22.18831 -21.30120 -18.74041 -18.61840 -18.14321 -17.77577 -17.38163 -16.78328 -16.17246 -16.15339 -16.00213 -15.47756 -15.35968 -15.03374 -14.70699 -14.37348 -14.24294 -14.15479 -13.85673 -13.56970 -13.24140 -12.99255 -12.87342 -12.70430 -12.62378 -12.54740 -12.42157 -12.29933 -12.08446 -11.80888 -11.53547 -11.31176 -11.14822 -10.56460 -9.74541 -9.60977 -8.94085 -8.16825 -6.23829 -0.08355 0.05573 1.40604 1.41971 1.51679 2.31259 2.42622 2.80248 3.16747 3.31743 3.40519 3.57531 3.75660 4.03536 4.06099 4.20514 4.34661 4.42195 4.54757 4.62031 4.68416 4.75744 4.81312 4.82677 4.89171 4.94885 5.03501 5.06487 5.16543 5.25318 5.28924 5.34502 5.39168 5.48335 5.53425 5.58813 5.70861 5.81298 6.12833 6.41643 6.68673 6.92622 7.44649 8.93572 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.006233 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.082552 B = 4491.095245 C = 5815.662155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C 0.060 3.940 4 N -0.533 5.533 5 C 0.209 3.791 6 C -0.517 4.517 7 H 0.060 0.940 8 C 0.005 3.995 9 N -0.930 5.930 10 Si 0.956 3.044 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.264 1.264 14 C 0.091 3.909 15 C -0.058 4.058 16 C -0.089 4.089 17 C -0.130 4.130 18 C 0.050 3.950 19 F -0.139 7.139 20 C 0.041 3.959 21 F -0.137 7.137 22 C -0.069 4.069 23 C -0.120 4.120 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.025 0.975 31 H 0.015 0.985 32 H -0.038 1.038 33 H 0.262 0.738 34 H 0.040 0.960 35 H 0.106 0.894 36 H 0.144 0.856 37 H 0.165 0.835 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 -11.025 -8.551 13.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.068 4.068 4 N -0.257 5.257 5 C 0.083 3.917 6 C -0.556 4.556 7 H 0.078 0.922 8 C -0.193 4.193 9 N -0.571 5.571 10 Si 0.782 3.218 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.188 1.188 14 C -0.036 4.036 15 C -0.058 4.058 16 C -0.108 4.108 17 C -0.148 4.148 18 C 0.030 3.970 19 F -0.118 7.118 20 C 0.021 3.979 21 F -0.115 7.115 22 C -0.071 4.071 23 C -0.176 4.176 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.033 0.967 32 H -0.020 1.020 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.124 0.876 36 H 0.162 0.838 37 H 0.182 0.818 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.693 -11.265 -8.143 13.917 hybrid contribution 0.369 1.116 0.634 1.335 sum -0.324 -10.149 -7.510 12.629 Atomic orbital electron populations 1.21707 0.94844 1.02187 1.01642 1.21526 0.95980 0.95108 1.02304 1.22102 0.87268 0.97810 0.99591 1.62064 1.05864 1.31313 1.26481 1.19384 0.94766 0.83856 0.93739 1.21474 1.31852 1.02434 0.99795 0.92169 1.25762 0.95560 0.96020 1.01981 1.70055 1.38806 1.09241 1.38999 0.85573 0.78963 0.77123 0.80125 1.20523 1.20945 1.18839 1.21107 0.90082 1.00996 0.91421 1.19786 0.96513 0.92434 0.97106 1.21230 0.91488 0.99456 0.98616 1.21189 0.98369 0.94831 1.00420 1.17811 0.77614 0.96072 1.05540 1.91472 1.33631 1.93550 1.93124 1.17647 0.93227 0.82850 1.04153 1.91449 1.93093 1.43051 1.83929 1.19837 0.92092 0.97115 0.98043 1.20949 0.97385 0.97111 1.02131 0.92397 0.91208 0.93672 0.90900 0.92046 0.92374 0.95641 0.96740 1.02008 0.92952 0.94191 0.87616 0.83792 0.81781 0.88766 0.91718 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.91 71.98 0.71 -2.44 16 2 C -0.11 -2.85 4.88 30.59 0.15 -2.70 16 3 C 0.06 2.05 4.81 86.30 0.41 2.46 16 4 N -0.53 -20.40 3.57 -905.36 -3.23 -23.63 16 5 C 0.21 10.33 4.57 85.55 0.39 10.72 16 6 C -0.52 -28.22 8.23 25.60 0.21 -28.01 16 7 H 0.06 3.25 7.31 -2.91 -0.02 3.23 16 8 C 0.00 0.27 5.46 84.65 0.46 0.73 16 9 N -0.93 -54.60 13.29 21.45 0.28 -54.32 16 10 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 14 C 0.09 2.81 4.04 85.56 0.35 3.16 16 15 C -0.06 -1.82 4.69 -19.86 -0.09 -1.91 16 16 C -0.09 -2.73 8.74 22.27 0.19 -2.54 16 17 C -0.13 -3.76 10.02 22.31 0.22 -3.54 16 18 C 0.05 1.59 7.31 22.41 0.16 1.75 16 19 F -0.14 -4.46 17.18 44.97 0.77 -3.69 16 20 C 0.04 1.34 7.25 22.41 0.16 1.51 16 21 F -0.14 -4.45 16.46 44.97 0.74 -3.71 16 22 C -0.07 -2.15 5.88 -19.83 -0.12 -2.27 16 23 C -0.12 -3.12 9.16 71.23 0.65 -2.47 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.57 6.88 -2.38 -0.02 1.55 16 28 H 0.06 1.68 7.66 -2.39 -0.02 1.67 16 29 H 0.06 2.33 6.58 -2.39 -0.02 2.32 16 30 H 0.03 0.83 8.00 -2.39 -0.02 0.81 16 31 H 0.01 0.77 6.48 -2.38 -0.02 0.76 16 32 H -0.04 -2.04 8.12 -2.39 -0.02 -2.06 16 33 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.04 1.23 7.90 -2.39 -0.02 1.21 16 35 H 0.11 2.62 5.87 -2.39 -0.01 2.61 16 36 H 0.14 4.14 8.01 -2.91 -0.02 4.12 16 37 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 39 H 0.06 1.71 7.75 -2.39 -0.02 1.69 16 40 H 0.10 2.65 4.36 -2.38 -0.01 2.64 16 Total: -1.00 -61.90 330.16 5.50 -56.39 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 1.04 Total: 8.54 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 3.87 Total: -25.54 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -2.95 Total: -77.95 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 1.51 Total: -7.41 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -61.90 5.50 -56.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237157662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.480 kcal (2) G-P(sol) polarization free energy of solvation -61.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds