Wall clock time and date at job start Tue Mar 31 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47285 * 2 1 4 4 C 1.53003 * 109.47114 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46921 * 184.74828 * 4 3 2 6 6 C 1.36939 * 119.99778 * 265.80961 * 5 4 3 7 7 H 1.07997 * 119.99919 * 21.16246 * 6 5 4 8 8 C 1.38811 * 119.99894 * 201.15994 * 6 5 4 9 9 N 1.31615 * 120.00129 * 20.60655 * 8 6 5 10 10 Si 1.86804 * 119.99932 * 200.61010 * 8 6 5 11 11 H 1.48502 * 109.47047 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47218 * 119.99846 * 10 8 6 13 13 H 1.48498 * 109.46782 * 239.99792 * 10 8 6 14 14 C 1.46503 * 120.00146 * 85.81816 * 5 4 3 15 15 C 1.50697 * 109.46991 * 84.11536 * 14 5 4 16 16 C 1.38255 * 119.96747 * 355.35474 * 15 14 5 17 17 C 1.38223 * 120.07076 * 180.02562 * 16 15 14 18 18 C 1.38412 * 119.99790 * 0.02562 * 17 16 15 19 19 F 1.35101 * 120.03201 * 179.97438 * 18 17 16 20 20 C 1.38652 * 119.93217 * 0.27418 * 18 17 16 21 21 F 1.35098 * 120.03570 * 179.72604 * 20 18 17 22 22 C 1.38213 * 119.96224 * 175.37823 * 15 14 5 23 23 C 1.50696 * 120.00160 * 359.95886 * 22 15 14 24 24 H 1.09004 * 109.47551 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47225 * 299.99792 * 1 2 3 26 26 H 1.09003 * 109.47116 * 59.99660 * 1 2 3 27 27 H 1.09008 * 109.46550 * 239.99951 * 2 1 3 28 28 H 1.09003 * 109.47116 * 120.00340 * 2 1 3 29 29 H 1.08996 * 109.47390 * 60.00084 * 3 2 1 30 30 H 1.09003 * 109.47321 * 300.00215 * 3 2 1 31 31 H 1.09000 * 109.47266 * 64.74783 * 4 3 2 32 32 H 1.09002 * 109.46909 * 304.75053 * 4 3 2 33 33 H 0.97005 * 120.00507 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.46549 * 324.11943 * 14 5 4 35 35 H 1.08994 * 109.46837 * 204.11698 * 14 5 4 36 36 H 1.08000 * 119.96609 * 0.02562 * 16 15 14 37 37 H 1.08000 * 119.99762 * 180.02562 * 17 16 15 38 38 H 1.09002 * 109.47831 * 93.48951 * 23 22 15 39 39 H 1.09007 * 109.47241 * 213.49707 * 23 22 15 40 40 H 1.09003 * 109.47081 * 333.49092 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8188 0.1137 6 6 4.3678 3.5314 -1.0140 7 1 3.9504 3.2420 -1.9671 8 6 5.2180 4.6256 -0.9321 9 7 6.0348 4.7491 0.0925 10 14 5.2027 5.9230 -2.2760 11 1 4.2022 5.5534 -3.3094 12 1 4.8455 7.2395 -1.6891 13 1 6.5484 6.0071 -2.8981 14 6 4.2159 3.4329 1.4345 15 6 5.5518 3.0439 2.0132 16 6 6.3615 2.1480 1.3400 17 6 7.5871 1.7892 1.8691 18 6 8.0045 2.3267 3.0744 19 9 9.2020 1.9762 3.5924 20 6 7.1898 3.2205 3.7525 21 9 7.5928 3.7421 4.9318 22 6 5.9661 3.5828 3.2166 23 6 5.0824 4.5595 3.9488 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8932 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 1.0041 -0.9303 32 1 3.9337 0.8564 0.8435 33 1 6.6287 5.5140 0.1500 34 1 3.4197 3.0865 2.0934 35 1 4.1629 4.5174 1.3395 36 1 6.0362 1.7279 0.3998 37 1 8.2188 1.0896 1.3421 38 1 4.4681 4.0226 4.6716 39 1 5.7017 5.2899 4.4696 40 1 4.4383 5.0727 3.2347 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237163746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:56 Heat of formation + Delta-G solvation = -69.149037 kcal Electronic energy + Delta-G solvation = -22963.425541 eV Core-core repulsion = 19413.953626 eV Total energy + Delta-G solvation = -3549.471915 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.30593 -49.39705 -40.20913 -37.75857 -35.52779 -33.72879 -33.05474 -31.37956 -29.31287 -28.17695 -26.98706 -25.51156 -23.18590 -22.65790 -22.03358 -21.43619 -18.87320 -18.56404 -17.59401 -17.39690 -17.18372 -16.80887 -16.16453 -15.87926 -15.65186 -15.48230 -15.22895 -15.02378 -14.49356 -14.30427 -14.24222 -13.83188 -13.55265 -13.31008 -13.12058 -12.97818 -12.86434 -12.69663 -12.37666 -12.20227 -12.16870 -11.97989 -11.95485 -11.77424 -11.67924 -11.49963 -11.19010 -10.49077 -9.48312 -9.12623 -8.72128 -7.73254 -5.17696 0.33986 0.39036 1.47611 1.55124 1.60110 2.56436 2.77578 3.07352 3.36634 3.49473 3.67655 3.89234 4.11703 4.23258 4.30057 4.37899 4.42625 4.49476 4.64060 4.68243 4.80045 4.92326 4.95033 4.98417 5.03299 5.13532 5.13836 5.18595 5.21815 5.26426 5.33657 5.46489 5.47974 5.57108 5.58422 5.70738 5.77119 5.99404 6.17533 6.39514 7.22092 7.93496 8.36975 9.22728 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.006707 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.032121 B = 4173.498315 C = 5501.055857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.126 4.126 4 C 0.145 3.855 5 N -0.603 5.603 6 C -0.257 4.257 7 H 0.065 0.935 8 C -0.030 4.030 9 N -0.900 5.900 10 Si 0.943 3.057 11 H -0.275 1.275 12 H -0.297 1.297 13 H -0.304 1.304 14 C 0.214 3.786 15 C 0.005 3.995 16 C -0.054 4.054 17 C -0.141 4.141 18 C 0.022 3.978 19 F -0.149 7.149 20 C 0.041 3.959 21 F -0.144 7.144 22 C -0.114 4.114 23 C -0.102 4.102 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.244 0.756 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.128 0.872 37 H 0.146 0.854 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.498 -6.648 4.528 9.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C 0.019 3.981 5 N -0.324 5.324 6 C -0.387 4.387 7 H 0.083 0.917 8 C -0.227 4.227 9 N -0.545 5.545 10 Si 0.775 3.225 11 H -0.200 1.200 12 H -0.225 1.225 13 H -0.232 1.232 14 C 0.088 3.912 15 C 0.002 3.998 16 C -0.073 4.073 17 C -0.160 4.160 18 C 0.002 3.998 19 F -0.128 7.128 20 C 0.021 3.979 21 F -0.123 7.123 22 C -0.116 4.116 23 C -0.158 4.158 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.146 0.854 37 H 0.164 0.836 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.346 -6.517 4.584 9.595 hybrid contribution 0.972 1.178 -0.630 1.653 sum -4.374 -5.338 3.954 7.953 Atomic orbital electron populations 1.21742 0.95379 1.01831 1.01543 1.21457 0.96236 0.96029 1.01942 1.22030 0.97298 0.96582 1.00726 1.21012 0.92903 0.84828 0.99327 1.44140 1.75553 1.10789 1.01894 1.19281 1.21799 1.08858 0.88773 0.91745 1.25277 0.96570 1.01822 0.99063 1.70128 1.22932 1.29347 1.32108 0.85589 0.76420 0.80466 0.80068 1.20040 1.22456 1.23150 1.19502 0.89625 0.97415 0.84628 1.20489 0.98791 0.90823 0.89735 1.20819 0.92035 0.96197 0.98234 1.21080 0.98403 1.02471 0.94030 1.17615 0.83051 1.02641 0.96526 1.91405 1.43211 1.91262 1.86894 1.17523 0.95876 1.00058 0.84417 1.91393 1.90872 1.85568 1.44492 1.19710 0.93901 1.00953 0.97030 1.20652 0.98454 0.96920 0.99803 0.91806 0.92913 0.93264 0.92132 0.91738 0.93153 0.93871 0.93688 0.93653 0.94629 0.92791 0.91731 0.85428 0.83614 0.89299 0.91823 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.91 71.98 0.71 -2.26 16 2 C -0.12 -2.76 5.93 30.59 0.18 -2.58 16 3 C -0.13 -3.77 5.54 30.59 0.17 -3.60 16 4 C 0.14 5.00 4.52 86.38 0.39 5.39 16 5 N -0.60 -25.33 1.40 -706.34 -0.99 -26.32 16 6 C -0.26 -12.34 9.57 84.03 0.80 -11.53 16 7 H 0.06 3.13 7.91 -2.91 -0.02 3.11 16 8 C -0.03 -1.50 4.85 84.86 0.41 -1.09 16 9 N -0.90 -46.09 8.93 21.65 0.19 -45.90 16 10 Si 0.94 42.24 29.60 68.60 2.03 44.27 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 13 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 14 C 0.21 8.67 4.12 85.63 0.35 9.02 16 15 C 0.00 0.20 4.04 -19.87 -0.08 0.12 16 16 C -0.05 -2.21 8.07 22.27 0.18 -2.03 16 17 C -0.14 -5.34 10.02 22.31 0.22 -5.11 16 18 C 0.02 0.85 7.31 22.41 0.16 1.01 16 19 F -0.15 -5.73 17.18 44.97 0.77 -4.96 16 20 C 0.04 1.62 7.25 22.41 0.16 1.79 16 21 F -0.14 -5.53 16.46 44.97 0.74 -4.79 16 22 C -0.11 -4.36 5.88 -19.83 -0.12 -4.48 16 23 C -0.10 -3.23 9.44 71.23 0.67 -2.56 16 24 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.04 1.59 8.01 -2.39 -0.02 1.57 16 32 H 0.05 1.48 7.78 -2.39 -0.02 1.46 16 33 H 0.24 12.80 8.31 -92.70 -0.77 12.03 16 34 H 0.05 1.93 8.11 -2.39 -0.02 1.91 16 35 H 0.06 2.96 5.78 -2.39 -0.01 2.94 16 36 H 0.13 5.44 6.06 -2.91 -0.02 5.42 16 37 H 0.15 4.77 8.06 -2.91 -0.02 4.75 16 38 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.06 1.96 7.75 -2.38 -0.02 1.94 16 40 H 0.07 2.38 6.38 -2.39 -0.02 2.36 16 Total: -1.00 -52.59 330.65 8.00 -44.59 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.03 Total: 11.00 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 4.23 Total: -17.90 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -0.80 Total: -72.22 kcal Atomic # 9 Polarization: -11.26 SS G_CDS: 1.51 Total: -9.74 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -52.59 8.00 -44.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237163746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.562 kcal (2) G-P(sol) polarization free energy of solvation -52.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds