Wall clock time and date at job start Tue Mar 31 2020 06:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46905 * 110.99910 * 2 1 4 4 C 1.50707 * 109.47110 * 293.95316 * 3 2 1 5 5 H 1.07995 * 119.99741 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00009 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99910 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00079 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47062 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46994 * 119.99658 * 8 6 4 11 11 H 1.48499 * 109.47265 * 240.00141 * 8 6 4 12 12 C 1.46896 * 111.00247 * 123.95326 * 2 1 3 13 13 C 1.50695 * 109.47379 * 66.04960 * 12 2 1 14 14 C 1.34204 * 126.53423 * 260.02788 * 13 12 2 15 15 N 1.36847 * 109.96147 * 179.97438 * 14 13 12 16 16 C 1.46499 * 125.01890 * 179.97438 * 15 14 13 17 17 C 1.37487 * 109.95939 * 0.24182 * 15 14 13 18 18 C 1.39348 * 133.23682 * 179.76096 * 17 15 14 19 19 C 1.36344 * 120.24456 * 179.97438 * 18 17 15 20 20 C 1.40231 * 120.66093 * 0.02562 * 19 18 17 21 21 C 1.43199 * 119.97605 * 179.97438 * 20 19 18 22 22 N 6.76200 * 130.57499 * 215.30564 * 2 1 3 23 23 C 1.39175 * 120.04386 * 359.55698 * 20 19 18 24 24 C 1.39313 * 119.38382 * 0.66895 * 23 20 19 25 25 H 1.09004 * 109.47108 * 296.04488 * 1 2 3 26 26 H 1.09002 * 109.47482 * 56.04634 * 1 2 3 27 27 H 1.09009 * 109.46935 * 176.04549 * 1 2 3 28 28 H 1.08998 * 109.46962 * 53.95284 * 3 2 1 29 29 H 1.08996 * 109.47279 * 173.95679 * 3 2 1 30 30 H 0.96998 * 119.99876 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.47060 * 306.04370 * 12 2 1 32 32 H 1.09005 * 109.47340 * 186.04751 * 12 2 1 33 33 H 1.08004 * 125.01624 * 359.97438 * 14 13 12 34 34 H 1.09002 * 109.47391 * 90.02181 * 16 15 14 35 35 H 1.09001 * 109.46813 * 330.02238 * 16 15 14 36 36 H 1.09004 * 109.47041 * 210.02365 * 16 15 14 37 37 H 1.08000 * 119.87963 * 0.02562 * 18 17 15 38 38 H 1.07997 * 119.66255 * 179.97438 * 19 18 17 39 39 H 1.07995 * 120.30796 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0739 1.5115 -2.0485 6 6 2.0267 3.3495 -1.5285 7 7 2.7109 4.0023 -0.6146 8 14 1.5817 4.1873 -3.1377 9 1 0.8135 3.2450 -3.9905 10 1 0.7540 5.3882 -2.8582 11 1 2.8230 4.5949 -3.8434 12 6 1.9954 -0.7659 1.1375 13 6 1.6371 -2.2204 0.9729 14 6 0.6276 -2.8676 1.5755 15 7 0.6120 -4.1782 1.1820 16 6 -0.3524 -5.1818 1.6391 17 6 1.6387 -4.4154 0.2988 18 6 2.0664 -5.5518 -0.3849 19 6 3.1442 -5.4874 -1.2174 20 6 3.8373 -4.2818 -1.3980 21 6 4.9678 -4.2309 -2.2755 22 7 5.8672 -4.1915 -2.9684 23 6 3.4219 -3.1327 -0.7316 24 6 2.3238 -3.1974 0.1232 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 -1.0253 -0.0709 28 1 1.5610 1.9274 0.8309 29 1 3.0796 1.3445 0.1082 30 1 2.9855 4.9184 -0.7766 31 1 1.5612 -0.3872 2.0627 32 1 3.0798 -0.6610 1.1756 33 1 -0.0694 -2.4202 2.2687 34 1 -1.2137 -5.1890 0.9710 35 1 -0.6789 -4.9379 2.6501 36 1 0.1178 -6.1652 1.6364 37 1 1.5416 -6.4868 -0.2555 38 1 3.4678 -6.3740 -1.7423 39 1 3.9528 -2.2020 -0.8673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237465442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:03 Heat of formation + Delta-G solvation = 98.410871 kcal Electronic energy + Delta-G solvation = -21120.625710 eV Core-core repulsion = 18029.108925 eV Total energy + Delta-G solvation = -3091.516785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.42048 -37.80634 -36.57014 -35.78431 -33.29475 -32.24879 -30.66368 -29.42018 -28.02241 -26.93283 -25.67121 -23.71161 -22.90575 -22.13759 -20.48034 -19.49747 -18.24779 -16.89761 -16.26488 -16.11639 -15.54864 -14.80441 -14.72424 -14.24165 -14.09744 -13.86683 -13.77425 -13.66953 -13.40444 -12.85323 -12.68743 -12.66089 -12.56021 -12.08803 -11.98647 -11.83059 -11.30911 -11.20072 -10.97822 -10.85898 -10.73489 -10.61386 -10.41233 -9.84985 -9.55875 -9.16931 -8.41234 -8.19854 -7.59016 -7.16588 -5.99996 -4.00741 0.96981 1.21541 2.67639 2.72205 2.84828 3.14130 3.33461 3.41180 3.46246 4.02711 4.08245 4.46421 4.53326 4.58802 4.79725 4.90539 4.95567 5.17410 5.19605 5.24534 5.36128 5.42460 5.53752 5.65340 5.82045 5.91320 6.06529 6.15352 6.27311 6.31418 6.39925 6.50153 6.63760 6.76736 6.82138 7.11976 7.23045 7.32888 7.37019 7.67621 7.84206 8.12226 8.24319 8.58722 9.07579 9.63593 11.10870 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.004649 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.357947 B = 6021.012648 C = 7405.441516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.534 5.534 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.120 3.880 13 C -0.122 4.122 14 C 0.038 3.962 15 N -0.485 5.485 16 C 0.080 3.920 17 C 0.120 3.880 18 C -0.135 4.135 19 C -0.056 4.056 20 C -0.075 4.075 21 C 0.267 3.733 22 N -0.437 5.437 23 C 0.012 3.988 24 C -0.096 4.096 25 H 0.008 0.992 26 H 0.072 0.928 27 H 0.044 0.956 28 H -0.009 1.009 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.166 0.834 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.277 -20.273 7.058 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.258 5.258 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.008 4.008 13 C -0.129 4.129 14 C -0.085 4.085 15 N -0.168 5.168 16 C -0.062 4.062 17 C 0.012 3.988 18 C -0.156 4.156 19 C -0.077 4.077 20 C -0.080 4.080 21 C -0.047 4.047 22 N -0.113 5.113 23 C -0.009 4.009 24 C -0.101 4.101 25 H 0.026 0.974 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.008 0.992 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.184 0.816 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.907 -20.457 5.731 21.804 hybrid contribution -0.997 0.971 0.224 1.410 sum -5.904 -19.486 5.955 21.214 Atomic orbital electron populations 1.22183 0.89027 0.99444 1.00181 1.62095 1.06929 1.17378 1.39442 1.19751 0.95420 0.81493 0.96616 1.21202 1.34565 0.96798 1.01705 0.91817 1.24974 0.95357 0.97380 0.96890 1.69966 1.38592 1.11383 1.33982 0.86478 0.78178 0.79303 0.83696 1.19662 1.21179 1.21020 1.20409 1.00253 0.87313 0.92847 1.20414 0.97227 0.95422 0.99862 1.21611 1.00999 0.82655 1.03278 1.43727 1.25686 1.09144 1.38255 1.21927 0.92039 0.91436 1.00791 1.18427 0.90376 0.95717 0.94322 1.19498 0.99510 0.96085 1.00482 1.20350 0.94063 0.96175 0.97140 1.15645 0.95065 0.95433 1.01827 1.25671 0.92757 0.93412 0.92907 1.81223 1.11471 1.07723 1.10877 1.20721 0.92920 0.96828 0.90430 1.18850 0.97693 0.92596 1.00976 0.97386 0.90972 0.93688 0.99153 0.95172 0.93033 0.95079 0.90452 0.81629 0.91265 0.89965 0.90202 0.85880 0.85255 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.17 60.06 0.55 1.32 16 2 N -0.53 -11.18 4.74 -245.82 -1.17 -12.34 16 3 C 0.19 4.91 4.72 -4.97 -0.02 4.88 16 4 C -0.50 -14.08 8.46 -34.44 -0.29 -14.37 16 5 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.12 2.06 5.50 -4.98 -0.03 2.03 16 13 C -0.12 -1.78 4.92 -102.69 -0.51 -2.29 16 14 C 0.04 0.45 10.53 -16.73 -0.18 0.27 16 15 N -0.49 -5.00 3.17 -121.74 -0.39 -5.39 16 16 C 0.08 0.47 11.02 59.85 0.66 1.13 16 17 C 0.12 1.43 6.80 -83.93 -0.57 0.86 16 18 C -0.13 -1.31 9.85 -39.85 -0.39 -1.70 16 19 C -0.06 -0.57 9.66 -39.52 -0.38 -0.95 16 20 C -0.07 -0.95 5.73 -106.87 -0.61 -1.56 16 21 C 0.27 3.84 15.32 -22.47 -0.34 3.50 16 22 N -0.44 -7.22 18.54 41.84 0.78 -6.44 16 23 C 0.01 0.17 9.81 -38.83 -0.38 -0.21 16 24 C -0.10 -1.37 6.34 -105.16 -0.67 -2.04 16 25 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 26 H 0.07 1.50 6.76 -51.93 -0.35 1.15 16 27 H 0.04 0.75 6.77 -51.92 -0.35 0.40 16 28 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 29 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.03 0.51 8.12 -51.93 -0.42 0.08 16 32 H 0.08 1.34 7.93 -51.93 -0.41 0.93 16 33 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.35 8.13 -51.93 -0.42 -0.08 16 36 H 0.08 0.35 8.04 -51.93 -0.42 -0.07 16 37 H 0.12 0.84 8.02 -52.49 -0.42 0.42 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -32.57 339.61 -8.46 -41.03 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -5.25 Total: -5.13 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -3.26 Total: -7.67 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.04 Total: -50.12 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.57 -8.46 -41.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237465442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.439 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds