Wall clock time and date at job start Tue Mar 31 2020 06:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46905 * 110.99910 * 2 1 4 4 C 1.50707 * 109.47110 * 293.95316 * 3 2 1 5 5 H 1.07995 * 119.99741 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00009 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99910 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00079 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47062 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46994 * 119.99658 * 8 6 4 11 11 H 1.48499 * 109.47265 * 240.00141 * 8 6 4 12 12 C 1.46896 * 111.00247 * 123.95326 * 2 1 3 13 13 C 1.50695 * 109.47379 * 66.04960 * 12 2 1 14 14 C 1.34204 * 126.53423 * 260.02788 * 13 12 2 15 15 N 1.36847 * 109.96147 * 179.97438 * 14 13 12 16 16 C 1.46499 * 125.01890 * 179.97438 * 15 14 13 17 17 C 1.37487 * 109.95939 * 0.24182 * 15 14 13 18 18 C 1.39348 * 133.23682 * 179.76096 * 17 15 14 19 19 C 1.36344 * 120.24456 * 179.97438 * 18 17 15 20 20 C 1.40231 * 120.66093 * 0.02562 * 19 18 17 21 21 C 1.43199 * 119.97605 * 179.97438 * 20 19 18 22 22 N 6.76200 * 130.57499 * 215.30564 * 2 1 3 23 23 C 1.39175 * 120.04386 * 359.55698 * 20 19 18 24 24 C 1.39313 * 119.38382 * 0.66895 * 23 20 19 25 25 H 1.09004 * 109.47108 * 296.04488 * 1 2 3 26 26 H 1.09002 * 109.47482 * 56.04634 * 1 2 3 27 27 H 1.09009 * 109.46935 * 176.04549 * 1 2 3 28 28 H 1.08998 * 109.46962 * 53.95284 * 3 2 1 29 29 H 1.08996 * 109.47279 * 173.95679 * 3 2 1 30 30 H 0.96998 * 119.99876 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.47060 * 306.04370 * 12 2 1 32 32 H 1.09005 * 109.47340 * 186.04751 * 12 2 1 33 33 H 1.08004 * 125.01624 * 359.97438 * 14 13 12 34 34 H 1.09002 * 109.47391 * 90.02181 * 16 15 14 35 35 H 1.09001 * 109.46813 * 330.02238 * 16 15 14 36 36 H 1.09004 * 109.47041 * 210.02365 * 16 15 14 37 37 H 1.08000 * 119.87963 * 0.02562 * 18 17 15 38 38 H 1.07997 * 119.66255 * 179.97438 * 19 18 17 39 39 H 1.07995 * 120.30796 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0739 1.5115 -2.0485 6 6 2.0267 3.3495 -1.5285 7 7 2.7109 4.0023 -0.6146 8 14 1.5817 4.1873 -3.1377 9 1 0.8135 3.2450 -3.9905 10 1 0.7540 5.3882 -2.8582 11 1 2.8230 4.5949 -3.8434 12 6 1.9954 -0.7659 1.1375 13 6 1.6371 -2.2204 0.9729 14 6 0.6276 -2.8676 1.5755 15 7 0.6120 -4.1782 1.1820 16 6 -0.3524 -5.1818 1.6391 17 6 1.6387 -4.4154 0.2988 18 6 2.0664 -5.5518 -0.3849 19 6 3.1442 -5.4874 -1.2174 20 6 3.8373 -4.2818 -1.3980 21 6 4.9678 -4.2309 -2.2755 22 7 5.8672 -4.1915 -2.9684 23 6 3.4219 -3.1327 -0.7316 24 6 2.3238 -3.1974 0.1232 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 -1.0253 -0.0709 28 1 1.5610 1.9274 0.8309 29 1 3.0796 1.3445 0.1082 30 1 2.9855 4.9184 -0.7766 31 1 1.5612 -0.3872 2.0627 32 1 3.0798 -0.6610 1.1756 33 1 -0.0694 -2.4202 2.2687 34 1 -1.2137 -5.1890 0.9710 35 1 -0.6789 -4.9379 2.6501 36 1 0.1178 -6.1652 1.6364 37 1 1.5416 -6.4868 -0.2555 38 1 3.4678 -6.3740 -1.7423 39 1 3.9528 -2.2020 -0.8673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237465442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:02 Heat of formation + Delta-G solvation = 79.046859 kcal Electronic energy + Delta-G solvation = -21121.465396 eV Core-core repulsion = 18029.108925 eV Total energy + Delta-G solvation = -3092.356472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.31985 -38.82532 -38.15622 -36.89247 -34.88559 -33.75737 -31.53819 -30.54507 -29.31005 -28.58911 -26.87676 -25.27103 -23.92575 -23.15398 -22.11023 -20.51621 -19.28510 -18.49413 -17.59693 -17.08566 -16.79822 -16.30935 -15.96752 -15.60465 -15.41030 -15.12548 -14.88287 -14.79804 -14.67070 -13.95877 -13.87891 -13.64924 -13.50525 -13.41105 -13.23245 -13.08214 -12.92698 -12.80440 -12.59831 -12.37530 -12.24249 -11.93670 -11.78286 -11.73883 -11.25248 -10.61185 -10.49980 -9.12897 -8.91466 -8.47913 -8.17944 -6.27967 -0.05102 0.35267 1.39769 1.41422 1.54253 1.68659 1.73204 1.95782 2.04810 2.41600 3.00096 3.05144 3.13865 3.59644 3.76440 3.87453 3.96736 4.19435 4.27593 4.49676 4.54245 4.59656 4.63084 4.71299 4.79184 4.81188 4.86358 4.88748 4.92543 5.12264 5.15970 5.24191 5.35480 5.43378 5.52395 5.67486 5.72315 5.77994 6.09622 6.20870 6.42147 6.45347 6.53856 6.72543 6.89554 7.41698 8.92229 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.004649 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.357947 B = 6021.012648 C = 7405.441516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.545 5.545 3 C 0.208 3.792 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.935 5.935 8 Si 0.965 3.035 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.281 1.281 12 C 0.128 3.872 13 C -0.167 4.167 14 C 0.066 3.934 15 N -0.478 5.478 16 C 0.070 3.930 17 C 0.117 3.883 18 C -0.117 4.117 19 C -0.051 4.051 20 C -0.078 4.078 21 C 0.285 3.715 22 N -0.480 5.480 23 C -0.014 4.014 24 C -0.121 4.121 25 H 0.014 0.986 26 H 0.049 0.951 27 H 0.073 0.927 28 H -0.034 1.034 29 H 0.001 0.999 30 H 0.264 0.736 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.194 0.806 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.166 0.834 38 H 0.160 0.840 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.844 -23.238 7.304 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.269 5.269 3 C 0.082 3.918 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.790 3.210 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.207 1.207 12 C 0.000 4.000 13 C -0.174 4.174 14 C -0.060 4.060 15 N -0.159 5.159 16 C -0.069 4.069 17 C 0.008 3.992 18 C -0.137 4.137 19 C -0.073 4.073 20 C -0.083 4.083 21 C -0.028 4.028 22 N -0.157 5.157 23 C -0.036 4.036 24 C -0.126 4.126 25 H 0.033 0.967 26 H 0.068 0.932 27 H 0.092 0.908 28 H -0.017 1.017 29 H 0.019 0.981 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.211 0.789 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.183 0.817 38 H 0.178 0.822 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.497 -23.469 5.988 25.354 hybrid contribution -0.257 1.794 0.257 1.831 sum -7.754 -21.675 6.244 23.851 Atomic orbital electron populations 1.22105 0.87572 1.00811 0.99454 1.61991 1.08287 1.14600 1.42018 1.19372 0.93552 0.83994 0.94916 1.21500 1.34473 0.97326 1.02422 0.92170 1.25861 0.95135 0.98102 1.00457 1.70087 1.39582 1.11839 1.36033 0.85400 0.78015 0.78326 0.79288 1.18892 1.20130 1.20709 1.20262 0.99052 0.89087 0.91630 1.20125 1.00040 0.94037 1.03170 1.21923 0.99402 0.83123 1.01533 1.44030 1.25551 1.09339 1.37023 1.22325 0.91453 0.91080 1.02078 1.18660 0.90512 0.95354 0.94717 1.19916 0.98586 0.96799 0.98376 1.20677 0.93672 0.95802 0.97118 1.15747 0.94813 0.96240 1.01479 1.25987 0.92483 0.92107 0.92235 1.81224 1.12834 1.09172 1.12488 1.20575 0.94050 0.96542 0.92416 1.19002 0.98184 0.94085 1.01379 0.96714 0.93237 0.90828 1.01666 0.98121 0.92764 0.94308 0.92370 0.78904 0.90072 0.87982 0.88104 0.81653 0.82222 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.85 9.17 127.69 1.17 3.02 16 2 N -0.54 -23.72 4.74 -931.65 -4.42 -28.14 16 3 C 0.21 11.24 4.72 85.56 0.40 11.65 16 4 C -0.52 -30.02 8.46 25.60 0.22 -29.81 16 5 H 0.06 3.45 7.12 -2.91 -0.02 3.43 16 6 C 0.00 0.13 5.46 84.65 0.46 0.59 16 7 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 8 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 9 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 C 0.13 4.55 5.50 85.56 0.47 5.02 16 13 C -0.17 -4.79 4.92 -18.61 -0.09 -4.88 16 14 C 0.07 1.36 10.53 82.99 0.87 2.23 16 15 N -0.48 -7.92 3.17 -539.08 -1.71 -9.63 16 16 C 0.07 0.44 11.02 127.77 1.41 1.85 16 17 C 0.12 2.43 6.80 39.16 0.27 2.69 16 18 C -0.12 -1.76 9.85 22.10 0.22 -1.54 16 19 C -0.05 -0.89 9.66 22.31 0.22 -0.68 16 20 C -0.08 -1.96 5.73 -21.32 -0.12 -2.08 16 21 C 0.29 8.38 15.32 88.33 1.35 9.73 16 22 N -0.48 -16.32 18.54 19.00 0.35 -15.97 16 23 C -0.01 -0.42 9.81 22.75 0.22 -0.20 16 24 C -0.12 -3.43 6.34 -20.21 -0.13 -3.56 16 25 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 26 H 0.05 2.08 6.76 -2.39 -0.02 2.06 16 27 H 0.07 2.34 6.77 -2.38 -0.02 2.33 16 28 H -0.03 -1.98 8.12 -2.39 -0.02 -2.00 16 29 H 0.00 0.04 7.93 -2.39 -0.02 0.02 16 30 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.04 1.29 8.12 -2.39 -0.02 1.27 16 32 H 0.06 2.22 7.93 -2.38 -0.02 2.20 16 33 H 0.19 2.81 8.06 -2.91 -0.02 2.78 16 34 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.10 0.30 8.13 -2.39 -0.02 0.28 16 36 H 0.10 0.27 8.04 -2.38 -0.02 0.25 16 37 H 0.17 1.15 8.02 -2.91 -0.02 1.13 16 38 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.11 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -74.58 339.61 4.52 -70.06 By element: Atomic # 1 Polarization: -1.97 SS G_CDS: 1.05 Total: -0.92 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 6.94 Total: -5.96 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -5.49 Total: -110.61 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -74.58 4.52 -70.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237465442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.106 kcal (2) G-P(sol) polarization free energy of solvation -74.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds