Wall clock time and date at job start Tue Mar 31 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38603 * 120.79697 * 2 1 4 4 N 1.32334 * 119.10034 * 180.02562 * 3 2 1 5 5 C 1.31790 * 120.82111 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.12328 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.47240 * 89.99303 * 6 5 4 8 8 C 1.36938 * 120.00205 * 270.00138 * 7 6 5 9 9 H 1.07990 * 119.99803 * 5.77806 * 8 7 6 10 10 C 1.38817 * 119.99639 * 185.77746 * 8 7 6 11 11 N 1.31618 * 120.00278 * 355.02228 * 10 8 7 12 12 Si 1.86796 * 119.99651 * 175.02980 * 10 8 7 13 13 H 1.48502 * 109.47487 * 89.99890 * 12 10 8 14 14 H 1.48506 * 109.47170 * 209.99785 * 12 10 8 15 15 H 1.48498 * 109.47343 * 329.99768 * 12 10 8 16 16 C 1.46503 * 119.99819 * 89.99878 * 7 6 5 17 17 C 1.50705 * 109.46709 * 85.45796 * 16 7 6 18 18 C 1.38239 * 119.99802 * 274.99536 * 17 16 7 19 19 C 1.38240 * 119.99629 * 179.77191 * 18 17 16 20 20 C 1.38234 * 119.99894 * 0.50303 * 19 18 17 21 21 C 1.38227 * 120.00100 * 359.75112 * 20 19 18 22 22 C 1.38233 * 120.00372 * 359.97438 * 21 20 19 23 23 N 1.31788 * 121.75529 * 359.97438 * 5 4 3 24 24 C 1.32332 * 120.82179 * 0.02562 * 23 5 4 25 25 H 1.09003 * 109.47259 * 269.97806 * 1 2 3 26 26 H 1.09002 * 109.47299 * 29.97514 * 1 2 3 27 27 H 1.09000 * 109.47337 * 149.97416 * 1 2 3 28 28 H 1.07997 * 120.44984 * 0.04675 * 3 2 1 29 29 H 1.09001 * 109.47570 * 209.99641 * 6 5 4 30 30 H 1.09003 * 109.47357 * 329.99878 * 6 5 4 31 31 H 0.97000 * 119.99992 * 179.97438 * 11 10 8 32 32 H 1.08997 * 109.47707 * 205.45502 * 16 7 6 33 33 H 1.09000 * 109.47479 * 325.45981 * 16 7 6 34 34 H 1.08004 * 120.00226 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.99699 * 180.23469 * 19 18 17 36 36 H 1.08005 * 119.99701 * 179.72690 * 20 19 18 37 37 H 1.08006 * 120.00220 * 179.97438 * 21 20 19 38 38 H 1.07996 * 120.00637 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.45219 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2166 1.1906 0.0000 4 7 3.5393 1.1514 -0.0005 5 6 4.1808 0.0001 -0.0015 6 6 5.6878 0.0002 -0.0027 7 7 6.1772 -0.0003 1.3782 8 6 6.4059 1.1854 2.0240 9 1 6.1381 2.1184 1.5507 10 6 6.9820 1.1879 3.2870 11 7 7.2182 0.0500 3.9048 12 14 7.4216 2.8063 4.1097 13 1 6.2650 3.2859 4.9082 14 1 8.5908 2.6059 5.0030 15 1 7.7584 3.8137 3.0720 16 6 6.4219 -1.2693 2.0681 17 6 7.8083 -1.7604 1.7396 18 6 8.0265 -2.4960 0.5897 19 6 9.2991 -2.9425 0.2860 20 6 10.3515 -2.6622 1.1374 21 6 10.1322 -1.9312 2.2899 22 6 8.8608 -1.4798 2.5908 23 7 3.5394 -1.1512 -0.0016 24 6 2.2167 -1.1905 -0.0011 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6971 2.1374 0.0008 29 1 6.0508 -0.8896 -0.5171 30 1 6.0508 0.8904 -0.5164 31 1 7.6211 0.0518 4.7872 32 1 6.3348 -1.1205 3.1444 33 1 5.6885 -2.0071 1.7428 34 1 7.2036 -2.7184 -0.0735 35 1 9.4703 -3.5139 -0.6143 36 1 11.3449 -3.0148 0.9023 37 1 10.9543 -1.7125 2.9554 38 1 8.6893 -0.9090 3.4914 39 1 1.6972 -2.1373 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237806970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:03 Heat of formation + Delta-G solvation = 113.965543 kcal Electronic energy + Delta-G solvation = -21810.398555 eV Core-core repulsion = 18719.556271 eV Total energy + Delta-G solvation = -3090.842284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.56406 -38.23136 -35.83422 -33.66340 -33.20743 -31.54882 -30.53998 -29.68519 -28.07911 -25.48892 -25.28781 -24.19177 -22.40481 -21.52245 -21.04011 -19.73109 -17.42720 -16.97326 -16.40326 -15.51457 -15.23692 -14.51759 -14.24179 -14.18102 -13.84941 -13.48743 -13.38374 -13.21997 -12.95665 -12.69562 -12.43348 -12.36194 -11.97417 -11.56645 -11.47971 -10.92926 -10.83729 -10.56275 -10.36946 -10.22556 -10.19734 -10.13213 -9.94037 -9.40678 -8.83676 -8.74995 -8.69675 -7.87950 -7.57523 -6.98401 -5.54216 -3.29283 1.30536 1.55104 2.40951 2.51916 3.34945 3.41315 3.43732 4.15317 4.45239 4.55307 4.63627 4.87517 4.88639 5.00676 5.03297 5.28303 5.52203 5.71312 5.73135 5.73813 5.75480 5.86984 5.96016 6.04241 6.05879 6.30892 6.42460 6.54356 6.60684 6.75122 6.88224 6.93292 7.15922 7.25406 7.45429 7.48262 7.60263 7.75224 7.88542 8.08013 8.26320 8.58358 8.69291 9.24988 9.75065 10.10718 11.14081 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.014538 B = 0.006139 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.509865 B = 4559.675273 C = 6044.344356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.220 4.220 3 C 0.143 3.857 4 N -0.503 5.503 5 C 0.313 3.687 6 C 0.205 3.795 7 N -0.571 5.571 8 C -0.206 4.206 9 H 0.083 0.917 10 C -0.023 4.023 11 N -0.907 5.907 12 Si 0.923 3.077 13 H -0.290 1.290 14 H -0.288 1.288 15 H -0.281 1.281 16 C 0.137 3.863 17 C -0.055 4.055 18 C -0.132 4.132 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.150 4.150 22 C -0.095 4.095 23 N -0.511 5.511 24 C 0.141 3.859 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.157 0.843 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.253 0.747 32 H 0.175 0.825 33 H 0.013 0.987 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.175 0.825 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.137 -2.584 -5.867 9.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.225 4.225 3 C -0.025 4.025 4 N -0.216 5.216 5 C 0.044 3.956 6 C 0.075 3.925 7 N -0.288 5.288 8 C -0.335 4.335 9 H 0.101 0.899 10 C -0.213 4.213 11 N -0.560 5.560 12 Si 0.753 3.247 13 H -0.218 1.218 14 H -0.214 1.214 15 H -0.207 1.207 16 C 0.013 3.987 17 C -0.057 4.057 18 C -0.151 4.151 19 C -0.164 4.164 20 C -0.165 4.165 21 C -0.168 4.168 22 C -0.113 4.113 23 N -0.224 5.224 24 C -0.026 4.026 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.174 0.826 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.190 0.810 33 H 0.031 0.969 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.191 0.809 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.010 -2.521 -5.693 8.654 hybrid contribution -0.741 0.663 0.172 1.009 sum -6.752 -1.859 -5.521 8.918 Atomic orbital electron populations 1.20549 0.89999 1.02661 1.02310 1.21551 0.98437 0.96064 1.06415 1.23097 0.90316 0.97602 0.91445 1.68368 1.09065 1.31245 1.12931 1.25206 1.00529 0.82497 0.87414 1.19703 0.82558 1.01395 0.88869 1.44218 1.72084 1.03723 1.08782 1.19701 1.29996 0.85538 0.98257 0.89945 1.24730 1.01452 0.97532 0.97611 1.69065 1.50227 1.21993 1.14759 0.85913 0.77684 0.82101 0.78957 1.21755 1.21413 1.20711 1.21658 0.87567 0.83381 1.06061 1.20856 0.99462 0.93119 0.92267 1.21165 0.95948 1.00124 0.97882 1.20842 0.93686 1.02504 0.99357 1.20877 0.97671 1.01554 0.96376 1.21281 0.97959 1.00294 0.97289 1.22909 0.90275 0.95516 1.02593 1.68363 1.09207 1.31282 1.13574 1.23063 0.90283 0.97594 0.91642 0.91211 0.91537 0.91549 0.82598 0.91279 0.90907 0.93427 0.81016 0.96850 0.87868 0.88112 0.88254 0.88045 0.80887 0.82607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.06 36.00 0.36 -0.53 16 2 C -0.22 -3.00 5.91 -104.36 -0.62 -3.62 16 3 C 0.14 2.22 11.01 -17.20 -0.19 2.03 16 4 N -0.50 -9.84 10.33 -10.73 -0.11 -9.95 16 5 C 0.31 6.39 7.23 -157.20 -1.14 5.25 16 6 C 0.21 4.39 6.12 -5.19 -0.03 4.36 16 7 N -0.57 -13.88 2.50 -175.98 -0.44 -14.32 16 8 C -0.21 -5.38 9.82 -15.06 -0.15 -5.53 16 9 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 10 C -0.02 -0.58 5.45 -17.43 -0.09 -0.68 16 11 N -0.91 -23.31 5.73 55.49 0.32 -22.99 16 12 Si 0.92 21.21 29.56 -169.99 -5.02 16.19 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.14 3.32 5.29 -5.19 -0.03 3.30 16 17 C -0.05 -1.26 5.46 -104.62 -0.57 -1.83 16 18 C -0.13 -2.75 9.35 -39.58 -0.37 -3.12 16 19 C -0.15 -2.76 10.05 -39.58 -0.40 -3.16 16 20 C -0.15 -2.76 10.05 -39.59 -0.40 -3.16 16 21 C -0.15 -3.06 10.05 -39.59 -0.40 -3.45 16 22 C -0.09 -2.18 9.21 -39.58 -0.36 -2.55 16 23 N -0.51 -9.72 10.33 -10.73 -0.11 -9.83 16 24 C 0.14 2.15 11.01 -17.20 -0.19 1.96 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.52 8.10 -51.93 -0.42 0.09 16 27 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 28 H 0.16 1.90 8.06 -52.49 -0.42 1.47 16 29 H 0.07 1.42 7.05 -51.93 -0.37 1.05 16 30 H 0.07 1.54 8.04 -51.93 -0.42 1.12 16 31 H 0.25 6.30 8.08 -40.82 -0.33 5.97 16 32 H 0.17 4.61 4.56 -82.03 -0.37 4.23 16 33 H 0.01 0.32 8.08 -51.93 -0.42 -0.10 16 34 H 0.10 2.02 7.43 -52.48 -0.39 1.63 16 35 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 36 H 0.10 1.59 8.06 -52.48 -0.42 1.16 16 37 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 38 H 0.18 4.25 4.54 -52.69 -0.24 4.01 16 39 H 0.16 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -28.55 326.08 -10.15 -38.69 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.12 Total: 8.02 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -4.57 Total: -10.71 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.34 Total: -57.10 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.55 -10.15 -38.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237806970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.659 kcal (2) G-P(sol) polarization free energy of solvation -28.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds