Wall clock time and date at job start Tue Mar 31 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38603 * 120.79697 * 2 1 4 4 N 1.32334 * 119.10034 * 180.02562 * 3 2 1 5 5 C 1.31790 * 120.82111 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.12328 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.47240 * 89.99303 * 6 5 4 8 8 C 1.36938 * 120.00205 * 270.00138 * 7 6 5 9 9 H 1.07990 * 119.99803 * 5.77806 * 8 7 6 10 10 C 1.38817 * 119.99639 * 185.77746 * 8 7 6 11 11 N 1.31618 * 120.00278 * 355.02228 * 10 8 7 12 12 Si 1.86796 * 119.99651 * 175.02980 * 10 8 7 13 13 H 1.48502 * 109.47487 * 89.99890 * 12 10 8 14 14 H 1.48506 * 109.47170 * 209.99785 * 12 10 8 15 15 H 1.48498 * 109.47343 * 329.99768 * 12 10 8 16 16 C 1.46503 * 119.99819 * 89.99878 * 7 6 5 17 17 C 1.50705 * 109.46709 * 85.45796 * 16 7 6 18 18 C 1.38239 * 119.99802 * 274.99536 * 17 16 7 19 19 C 1.38240 * 119.99629 * 179.77191 * 18 17 16 20 20 C 1.38234 * 119.99894 * 0.50303 * 19 18 17 21 21 C 1.38227 * 120.00100 * 359.75112 * 20 19 18 22 22 C 1.38233 * 120.00372 * 359.97438 * 21 20 19 23 23 N 1.31788 * 121.75529 * 359.97438 * 5 4 3 24 24 C 1.32332 * 120.82179 * 0.02562 * 23 5 4 25 25 H 1.09003 * 109.47259 * 269.97806 * 1 2 3 26 26 H 1.09002 * 109.47299 * 29.97514 * 1 2 3 27 27 H 1.09000 * 109.47337 * 149.97416 * 1 2 3 28 28 H 1.07997 * 120.44984 * 0.04675 * 3 2 1 29 29 H 1.09001 * 109.47570 * 209.99641 * 6 5 4 30 30 H 1.09003 * 109.47357 * 329.99878 * 6 5 4 31 31 H 0.97000 * 119.99992 * 179.97438 * 11 10 8 32 32 H 1.08997 * 109.47707 * 205.45502 * 16 7 6 33 33 H 1.09000 * 109.47479 * 325.45981 * 16 7 6 34 34 H 1.08004 * 120.00226 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.99699 * 180.23469 * 19 18 17 36 36 H 1.08005 * 119.99701 * 179.72690 * 20 19 18 37 37 H 1.08006 * 120.00220 * 179.97438 * 21 20 19 38 38 H 1.07996 * 120.00637 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.45219 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2166 1.1906 0.0000 4 7 3.5393 1.1514 -0.0005 5 6 4.1808 0.0001 -0.0015 6 6 5.6878 0.0002 -0.0027 7 7 6.1772 -0.0003 1.3782 8 6 6.4059 1.1854 2.0240 9 1 6.1381 2.1184 1.5507 10 6 6.9820 1.1879 3.2870 11 7 7.2182 0.0500 3.9048 12 14 7.4216 2.8063 4.1097 13 1 6.2650 3.2859 4.9082 14 1 8.5908 2.6059 5.0030 15 1 7.7584 3.8137 3.0720 16 6 6.4219 -1.2693 2.0681 17 6 7.8083 -1.7604 1.7396 18 6 8.0265 -2.4960 0.5897 19 6 9.2991 -2.9425 0.2860 20 6 10.3515 -2.6622 1.1374 21 6 10.1322 -1.9312 2.2899 22 6 8.8608 -1.4798 2.5908 23 7 3.5394 -1.1512 -0.0016 24 6 2.2167 -1.1905 -0.0011 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6971 2.1374 0.0008 29 1 6.0508 -0.8896 -0.5171 30 1 6.0508 0.8904 -0.5164 31 1 7.6211 0.0518 4.7872 32 1 6.3348 -1.1205 3.1444 33 1 5.6885 -2.0071 1.7428 34 1 7.2036 -2.7184 -0.0735 35 1 9.4703 -3.5139 -0.6143 36 1 11.3449 -3.0148 0.9023 37 1 10.9543 -1.7125 2.9554 38 1 8.6893 -0.9090 3.4914 39 1 1.6972 -2.1373 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237806970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:03 Heat of formation + Delta-G solvation = 99.810022 kcal Electronic energy + Delta-G solvation = -21811.012384 eV Core-core repulsion = 18719.556271 eV Total energy + Delta-G solvation = -3091.456114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.87889 -39.86950 -37.54942 -34.97023 -34.54542 -33.30130 -32.16088 -31.29290 -29.49225 -27.32218 -26.64650 -25.45578 -23.98754 -23.08164 -22.53035 -21.41719 -19.11920 -18.46947 -17.81152 -17.08553 -16.98436 -15.97740 -15.83783 -15.57295 -15.27500 -15.11401 -14.95037 -14.53525 -14.40112 -13.97261 -13.71937 -13.59202 -13.25697 -13.18985 -13.11064 -12.76252 -12.61105 -12.16566 -12.03318 -11.91855 -11.76097 -11.73998 -11.60108 -11.20668 -10.66941 -10.03461 -10.02100 -9.48262 -9.22559 -8.83385 -7.46607 -5.24671 0.02574 0.30110 0.80041 0.91721 1.49269 1.50990 1.59208 2.49337 2.85709 3.14211 3.22442 3.39188 3.40890 3.78071 3.94981 4.03265 4.05577 4.29673 4.34938 4.47908 4.53045 4.57877 4.67661 4.84115 4.85581 4.87251 4.98957 5.04360 5.14096 5.19088 5.25360 5.48562 5.55699 5.62501 5.70174 5.85523 5.89494 6.11377 6.20819 6.38419 6.52964 6.71974 7.28449 7.34459 7.85492 8.20557 9.18193 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.014538 B = 0.006139 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.509865 B = 4559.675273 C = 6044.344356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.197 4.197 3 C 0.125 3.875 4 N -0.534 5.534 5 C 0.288 3.712 6 C 0.210 3.790 7 N -0.582 5.582 8 C -0.224 4.224 9 H 0.072 0.928 10 C -0.059 4.059 11 N -0.912 5.912 12 Si 0.975 3.025 13 H -0.292 1.292 14 H -0.288 1.288 15 H -0.282 1.282 16 C 0.149 3.851 17 C -0.076 4.076 18 C -0.141 4.141 19 C -0.141 4.141 20 C -0.141 4.141 21 C -0.155 4.155 22 C -0.123 4.123 23 N -0.534 5.534 24 C 0.126 3.874 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.189 0.811 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.249 0.751 32 H 0.150 0.850 33 H 0.003 0.997 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.121 0.879 38 H 0.155 0.845 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.978 -3.221 -6.908 11.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.201 4.201 3 C -0.041 4.041 4 N -0.248 5.248 5 C 0.019 3.981 6 C 0.081 3.919 7 N -0.300 5.300 8 C -0.353 4.353 9 H 0.090 0.910 10 C -0.249 4.249 11 N -0.565 5.565 12 Si 0.804 3.196 13 H -0.220 1.220 14 H -0.213 1.213 15 H -0.207 1.207 16 C 0.025 3.975 17 C -0.079 4.079 18 C -0.159 4.159 19 C -0.158 4.158 20 C -0.159 4.159 21 C -0.173 4.173 22 C -0.142 4.142 23 N -0.248 5.248 24 C -0.040 4.040 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.206 0.794 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.165 0.835 33 H 0.022 0.978 34 H 0.126 0.874 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.139 0.861 38 H 0.171 0.829 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.885 -3.169 -6.753 10.152 hybrid contribution -0.609 0.810 0.432 1.102 sum -7.495 -2.359 -6.322 10.085 Atomic orbital electron populations 1.20677 0.86111 1.04783 1.03561 1.22045 1.00939 0.94586 1.02527 1.23741 0.89222 0.99951 0.91179 1.68267 1.11366 1.31193 1.13974 1.24597 0.99903 0.83490 0.90143 1.19572 0.83968 1.00888 0.87461 1.44215 1.73205 1.03074 1.09551 1.19739 1.30845 0.85936 0.98798 0.90998 1.25324 1.01666 0.99828 0.98101 1.69318 1.49963 1.22695 1.14514 0.85128 0.77069 0.79484 0.77894 1.21985 1.21350 1.20732 1.21302 0.88499 0.83257 1.04486 1.20784 0.98736 0.94657 0.93693 1.21262 0.97375 1.00064 0.97238 1.21238 0.92648 1.01603 1.00354 1.21284 0.99401 1.00075 0.95145 1.21508 0.97286 1.00085 0.98401 1.22763 0.91819 0.97100 1.02470 1.68274 1.11376 1.30844 1.14329 1.23754 0.89210 0.99916 0.91116 0.90085 0.89560 0.89395 0.79424 0.91193 0.91780 0.93807 0.83500 0.97839 0.87351 0.84600 0.84475 0.86105 0.82874 0.79105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 10.06 71.23 0.72 -0.60 16 2 C -0.20 -4.90 5.91 -19.69 -0.12 -5.02 16 3 C 0.12 3.73 11.01 84.70 0.93 4.66 16 4 N -0.53 -21.23 10.33 -187.85 -1.94 -23.18 16 5 C 0.29 12.13 7.23 138.75 1.00 13.13 16 6 C 0.21 9.46 6.12 85.63 0.52 9.98 16 7 N -0.58 -29.65 2.50 -710.67 -1.78 -31.42 16 8 C -0.22 -12.21 9.82 84.03 0.82 -11.38 16 9 H 0.07 3.96 7.83 -2.92 -0.02 3.93 16 10 C -0.06 -3.16 5.45 84.86 0.46 -2.70 16 11 N -0.91 -48.85 5.73 21.65 0.12 -48.73 16 12 Si 0.97 44.73 29.56 68.60 2.03 46.76 16 13 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 14 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 16 C 0.15 7.56 5.29 85.63 0.45 8.02 16 17 C -0.08 -3.61 5.46 -19.86 -0.11 -3.72 16 18 C -0.14 -5.81 9.35 22.27 0.21 -5.60 16 19 C -0.14 -4.99 10.05 22.27 0.22 -4.77 16 20 C -0.14 -4.91 10.05 22.27 0.22 -4.69 16 21 C -0.15 -6.14 10.05 22.27 0.22 -5.92 16 22 C -0.12 -5.79 9.21 22.27 0.21 -5.59 16 23 N -0.53 -20.51 10.33 -187.85 -1.94 -22.45 16 24 C 0.13 3.64 11.01 84.70 0.93 4.58 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.09 0.94 8.10 -2.39 -0.02 0.92 16 27 H 0.09 0.93 8.10 -2.39 -0.02 0.91 16 28 H 0.19 4.14 8.06 -2.91 -0.02 4.12 16 29 H 0.07 3.01 7.05 -2.39 -0.02 3.00 16 30 H 0.06 2.88 8.04 -2.39 -0.02 2.86 16 31 H 0.25 12.95 8.08 -92.71 -0.75 12.20 16 32 H 0.15 8.33 4.56 -61.81 -0.28 8.05 16 33 H 0.00 0.17 8.08 -2.39 -0.02 0.15 16 34 H 0.11 4.26 7.43 -2.91 -0.02 4.24 16 35 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 36 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 37 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 38 H 0.16 7.85 4.54 -3.30 -0.02 7.83 16 39 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -64.85 326.08 4.00 -60.84 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.80 Total: 27.79 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 6.71 Total: -9.62 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -5.53 Total: -125.77 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -64.85 4.00 -60.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237806970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.655 kcal (2) G-P(sol) polarization free energy of solvation -64.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds