Wall clock time and date at job start Tue Mar 31 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 111.00399 * 2 1 4 4 C 1.50699 * 109.46877 * 66.04729 * 3 2 1 5 5 H 1.08000 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00074 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99663 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 120.00130 * 179.97438 * 6 4 3 9 9 H 1.48509 * 109.47233 * 59.99934 * 8 6 4 10 10 H 1.48501 * 109.47347 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47174 * 299.99833 * 8 6 4 12 12 C 1.46900 * 111.00202 * 236.04854 * 2 1 3 13 13 C 1.50706 * 109.46923 * 293.95690 * 12 2 1 14 14 C 1.38335 * 119.55604 * 94.72245 * 13 12 2 15 15 C 1.38714 * 119.35582 * 179.70696 * 14 13 12 16 16 C 1.38482 * 118.50752 * 0.55550 * 15 14 13 17 17 C 1.39267 * 119.06782 * 359.73111 * 16 15 14 18 18 C 1.48360 * 119.72529 * 179.97438 * 17 16 15 19 19 C 1.39311 * 119.72697 * 179.97438 * 18 17 16 20 20 C 1.38438 * 119.06873 * 179.97438 * 19 18 17 21 21 C 1.38759 * 118.50711 * 0.02562 * 20 19 18 22 22 C 1.38305 * 119.35789 * 359.97438 * 21 20 19 23 23 N 1.31721 * 120.89287 * 359.72032 * 22 21 20 24 24 N 1.31700 * 119.55012 * 274.99779 * 13 12 2 25 25 H 1.08993 * 109.47189 * 183.95221 * 1 2 3 26 26 H 1.08997 * 109.46938 * 303.95600 * 1 2 3 27 27 H 1.09000 * 109.46958 * 63.95356 * 1 2 3 28 28 H 1.08997 * 109.47230 * 186.04731 * 3 2 1 29 29 H 1.08998 * 109.46825 * 306.04765 * 3 2 1 30 30 H 0.97002 * 120.00358 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47839 * 173.95164 * 12 2 1 32 32 H 1.09001 * 109.46994 * 53.95130 * 12 2 1 33 33 H 1.08003 * 120.32055 * 359.97438 * 14 13 12 34 34 H 1.08003 * 120.74863 * 180.28791 * 15 14 13 35 35 H 1.07993 * 120.46294 * 179.70458 * 16 15 14 36 36 H 1.07993 * 120.46780 * 0.03151 * 19 18 17 37 37 H 1.07998 * 120.74711 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.32106 * 180.02562 * 21 20 19 39 39 H 1.07991 * 119.55029 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0270 3.3495 1.5286 7 7 2.7121 4.0018 0.6151 8 14 1.5820 4.1872 3.1377 9 1 2.1737 3.4302 4.2701 10 1 2.1144 5.5735 3.1379 11 1 0.1048 4.2237 3.2849 12 6 1.9955 -0.7659 -1.1376 13 6 1.6369 -2.2204 -0.9729 14 6 0.4974 -2.7154 -1.5813 15 6 0.1745 -4.0562 -1.4321 16 6 1.0052 -4.8544 -0.6636 17 6 2.1330 -4.2879 -0.0750 18 6 3.0327 -5.1295 0.7517 19 6 4.1612 -4.5630 1.3401 20 6 4.9910 -5.3607 2.1092 21 6 4.6644 -6.7004 2.2640 22 6 3.5282 -7.1966 1.6511 23 7 2.7526 -6.4139 0.9293 24 7 2.4097 -3.0018 -0.2472 25 1 -0.3633 -1.0251 0.0708 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4513 -0.9233 28 1 3.0798 1.3444 -0.1083 29 1 1.5612 1.9273 -0.8309 30 1 2.9862 4.9182 0.7767 31 1 3.0797 -0.6611 -1.1757 32 1 1.5611 -0.3872 -2.0628 33 1 -0.1325 -2.0652 -2.1704 34 1 -0.7072 -4.4673 -1.9010 35 1 0.7812 -5.9014 -0.5224 36 1 4.3851 -3.5160 1.1990 37 1 5.8727 -4.9497 2.5782 38 1 5.2909 -7.3492 2.8581 39 1 3.2708 -8.2386 1.7698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237828259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:02 Heat of formation + Delta-G solvation = 79.325088 kcal Electronic energy + Delta-G solvation = -20864.157091 eV Core-core repulsion = 17771.812684 eV Total energy + Delta-G solvation = -3092.344407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.60720 -39.54819 -36.50056 -33.22129 -32.77287 -32.55158 -31.86071 -30.01887 -27.36112 -26.83880 -24.69666 -24.26870 -23.40937 -21.93760 -21.44868 -20.17566 -17.58567 -16.59236 -16.28415 -16.01606 -15.89720 -15.44140 -15.07278 -14.57624 -14.42765 -14.14799 -13.86827 -13.56643 -13.32358 -13.03146 -13.01741 -12.41351 -11.97050 -11.92318 -11.58601 -11.35336 -11.06907 -10.88430 -10.68194 -10.48116 -10.10333 -9.93571 -9.84332 -9.74371 -9.47029 -9.27021 -9.10458 -8.43371 -8.34510 -7.24927 -6.01426 -4.02428 0.45184 1.18690 1.39895 1.67767 3.34945 3.38671 3.42089 3.57237 3.70838 4.13184 4.44896 4.55057 4.66749 4.75702 4.86236 4.95934 5.08346 5.16056 5.20622 5.29360 5.33340 5.35350 5.58581 5.72906 5.77620 5.87003 5.99559 6.10932 6.12436 6.22175 6.23821 6.27078 6.37402 6.58507 6.73581 6.79932 7.27900 7.32246 7.79477 7.80187 8.07100 8.17506 8.20043 8.53974 9.04540 9.61390 11.09478 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.017562 B = 0.003854 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.999387 B = 7262.787889 C = 8340.635499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.530 5.530 3 C 0.194 3.806 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.100 3.900 13 C 0.158 3.842 14 C -0.159 4.159 15 C -0.083 4.083 16 C -0.142 4.142 17 C 0.159 3.841 18 C 0.171 3.829 19 C -0.127 4.127 20 C -0.080 4.080 21 C -0.172 4.172 22 C 0.096 3.904 23 N -0.476 5.476 24 N -0.451 5.451 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.012 0.988 28 H 0.032 0.968 29 H -0.008 1.008 30 H 0.262 0.738 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.152 0.848 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 -20.706 -2.272 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.255 5.255 3 C 0.070 3.930 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.029 4.029 13 C 0.018 3.982 14 C -0.179 4.179 15 C -0.109 4.109 16 C -0.162 4.162 17 C 0.022 3.978 18 C 0.034 3.966 19 C -0.147 4.147 20 C -0.106 4.106 21 C -0.192 4.192 22 C -0.063 4.063 23 N -0.185 5.185 24 N -0.160 5.160 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.031 0.969 28 H 0.050 0.950 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.169 0.831 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.302 -20.725 -1.871 20.812 hybrid contribution -0.483 0.902 0.178 1.039 sum -0.181 -19.823 -1.692 19.896 Atomic orbital electron populations 1.22283 0.88947 0.99511 1.00669 1.62082 1.06873 1.17782 1.38766 1.19755 0.95552 0.80976 0.96740 1.21110 1.34867 0.96855 1.01680 0.91934 1.24972 0.95298 0.97307 0.96970 1.69944 1.38355 1.11492 1.34104 0.86558 0.78677 0.78309 0.83846 1.20162 1.21350 1.20303 1.20977 1.01618 0.86836 0.93459 1.21265 0.90153 0.96011 0.90796 1.22139 0.98150 0.96143 1.01518 1.21516 0.98976 0.93493 0.96892 1.22044 0.94856 1.01629 0.97707 1.19227 0.92939 0.89724 0.95928 1.19323 0.92669 0.89419 0.95145 1.22318 0.94080 1.02435 0.95890 1.21650 0.99122 0.93593 0.96245 1.22218 0.99003 0.96507 1.01455 1.22635 0.91010 0.99406 0.93220 1.67430 1.30975 1.04470 1.15670 1.67288 1.31549 1.03276 1.13916 0.93804 0.90588 0.96914 0.94964 0.98973 0.92869 0.89413 0.94003 0.84833 0.84763 0.84070 0.83050 0.84460 0.84781 0.82573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.02 60.06 0.54 1.23 16 2 N -0.53 -11.70 4.74 -245.83 -1.17 -12.87 16 3 C 0.19 5.08 4.72 -4.97 -0.02 5.06 16 4 C -0.51 -14.35 8.46 -34.44 -0.29 -14.64 16 5 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.10 1.85 5.28 -4.97 -0.03 1.82 16 13 C 0.16 2.65 5.65 -82.61 -0.47 2.19 16 14 C -0.16 -2.20 8.33 -39.37 -0.33 -2.52 16 15 C -0.08 -1.01 10.17 -39.32 -0.40 -1.41 16 16 C -0.14 -1.91 9.61 -39.11 -0.38 -2.28 16 17 C 0.16 2.49 6.72 -82.95 -0.56 1.93 16 18 C 0.17 2.49 6.73 -82.95 -0.56 1.93 16 19 C -0.13 -1.71 9.61 -39.11 -0.38 -2.09 16 20 C -0.08 -0.84 10.17 -39.32 -0.40 -1.24 16 21 C -0.17 -1.55 10.11 -39.36 -0.40 -1.95 16 22 C 0.10 0.97 11.18 -17.57 -0.20 0.77 16 23 N -0.48 -6.25 9.40 -9.78 -0.09 -6.34 16 24 N -0.45 -7.87 9.32 -6.04 -0.06 -7.93 16 25 H 0.04 0.77 6.39 -51.93 -0.33 0.44 16 26 H 0.08 1.62 6.76 -51.93 -0.35 1.27 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.03 0.90 7.93 -51.93 -0.41 0.48 16 29 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.09 1.66 7.93 -51.93 -0.41 1.25 16 32 H 0.04 0.71 8.02 -51.93 -0.42 0.29 16 33 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.14 1.69 7.53 -52.49 -0.40 1.29 16 36 H 0.15 2.18 7.53 -52.49 -0.40 1.79 16 37 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -32.25 332.88 -9.72 -41.96 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.18 Total: -0.90 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -3.95 Total: -9.71 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.58 Total: -53.15 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.25 -9.72 -41.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237828259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.288 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds