Wall clock time and date at job start Tue Mar 31 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 111.00399 * 2 1 4 4 C 1.50699 * 109.46877 * 66.04729 * 3 2 1 5 5 H 1.08000 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00074 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99663 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 120.00130 * 179.97438 * 6 4 3 9 9 H 1.48509 * 109.47233 * 59.99934 * 8 6 4 10 10 H 1.48501 * 109.47347 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47174 * 299.99833 * 8 6 4 12 12 C 1.46900 * 111.00202 * 236.04854 * 2 1 3 13 13 C 1.50706 * 109.46923 * 293.95690 * 12 2 1 14 14 C 1.38335 * 119.55604 * 94.72245 * 13 12 2 15 15 C 1.38714 * 119.35582 * 179.70696 * 14 13 12 16 16 C 1.38482 * 118.50752 * 0.55550 * 15 14 13 17 17 C 1.39267 * 119.06782 * 359.73111 * 16 15 14 18 18 C 1.48360 * 119.72529 * 179.97438 * 17 16 15 19 19 C 1.39311 * 119.72697 * 179.97438 * 18 17 16 20 20 C 1.38438 * 119.06873 * 179.97438 * 19 18 17 21 21 C 1.38759 * 118.50711 * 0.02562 * 20 19 18 22 22 C 1.38305 * 119.35789 * 359.97438 * 21 20 19 23 23 N 1.31721 * 120.89287 * 359.72032 * 22 21 20 24 24 N 1.31700 * 119.55012 * 274.99779 * 13 12 2 25 25 H 1.08993 * 109.47189 * 183.95221 * 1 2 3 26 26 H 1.08997 * 109.46938 * 303.95600 * 1 2 3 27 27 H 1.09000 * 109.46958 * 63.95356 * 1 2 3 28 28 H 1.08997 * 109.47230 * 186.04731 * 3 2 1 29 29 H 1.08998 * 109.46825 * 306.04765 * 3 2 1 30 30 H 0.97002 * 120.00358 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47839 * 173.95164 * 12 2 1 32 32 H 1.09001 * 109.46994 * 53.95130 * 12 2 1 33 33 H 1.08003 * 120.32055 * 359.97438 * 14 13 12 34 34 H 1.08003 * 120.74863 * 180.28791 * 15 14 13 35 35 H 1.07993 * 120.46294 * 179.70458 * 16 15 14 36 36 H 1.07993 * 120.46780 * 0.03151 * 19 18 17 37 37 H 1.07998 * 120.74711 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.32106 * 180.02562 * 21 20 19 39 39 H 1.07991 * 119.55029 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0270 3.3495 1.5286 7 7 2.7121 4.0018 0.6151 8 14 1.5820 4.1872 3.1377 9 1 2.1737 3.4302 4.2701 10 1 2.1144 5.5735 3.1379 11 1 0.1048 4.2237 3.2849 12 6 1.9955 -0.7659 -1.1376 13 6 1.6369 -2.2204 -0.9729 14 6 0.4974 -2.7154 -1.5813 15 6 0.1745 -4.0562 -1.4321 16 6 1.0052 -4.8544 -0.6636 17 6 2.1330 -4.2879 -0.0750 18 6 3.0327 -5.1295 0.7517 19 6 4.1612 -4.5630 1.3401 20 6 4.9910 -5.3607 2.1092 21 6 4.6644 -6.7004 2.2640 22 6 3.5282 -7.1966 1.6511 23 7 2.7526 -6.4139 0.9293 24 7 2.4097 -3.0018 -0.2472 25 1 -0.3633 -1.0251 0.0708 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4513 -0.9233 28 1 3.0798 1.3444 -0.1083 29 1 1.5612 1.9273 -0.8309 30 1 2.9862 4.9182 0.7767 31 1 3.0797 -0.6611 -1.1757 32 1 1.5611 -0.3872 -2.0628 33 1 -0.1325 -2.0652 -2.1704 34 1 -0.7072 -4.4673 -1.9010 35 1 0.7812 -5.9014 -0.5224 36 1 4.3851 -3.5160 1.1990 37 1 5.8727 -4.9497 2.5782 38 1 5.2909 -7.3492 2.8581 39 1 3.2708 -8.2386 1.7698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237828259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:02 Heat of formation + Delta-G solvation = 58.408067 kcal Electronic energy + Delta-G solvation = -20865.064121 eV Core-core repulsion = 17771.812684 eV Total energy + Delta-G solvation = -3093.251437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.62955 -40.54863 -38.17991 -34.88266 -33.95227 -33.74112 -33.03490 -31.13013 -29.22787 -28.37790 -26.08151 -25.51920 -24.49480 -23.13715 -22.70936 -21.76400 -18.68923 -18.35748 -17.56121 -16.96660 -16.89293 -16.84314 -16.44606 -16.15498 -15.63868 -15.62071 -15.30629 -14.85156 -14.28538 -14.20826 -14.06534 -13.90159 -13.63290 -13.34179 -12.92187 -12.88394 -12.63191 -12.60178 -12.51646 -12.27942 -11.88483 -11.37824 -11.01968 -10.82114 -10.71962 -10.62603 -10.52249 -10.23231 -9.38355 -9.01417 -8.20616 -6.30668 -0.52099 0.28783 0.33626 0.71504 1.40315 1.43758 1.51701 2.39472 2.57943 2.72404 3.07346 3.11893 3.44245 3.57540 3.72882 3.90147 4.03189 4.11744 4.15065 4.20673 4.33651 4.36580 4.46265 4.49248 4.61911 4.69299 4.71458 4.83386 4.89094 5.03746 5.13715 5.16240 5.19914 5.24639 5.28572 5.31051 5.62832 5.70721 5.77756 6.03198 6.30243 6.57676 6.84070 6.89838 7.06878 7.38519 8.90232 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.017562 B = 0.003854 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.999387 B = 7262.787889 C = 8340.635499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.545 5.545 3 C 0.211 3.789 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.004 3.996 7 N -0.933 5.933 8 Si 0.969 3.031 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.266 1.266 12 C 0.104 3.896 13 C 0.134 3.866 14 C -0.158 4.158 15 C -0.069 4.069 16 C -0.140 4.140 17 C 0.140 3.860 18 C 0.142 3.858 19 C -0.152 4.152 20 C -0.083 4.083 21 C -0.157 4.157 22 C 0.092 3.908 23 N -0.491 5.491 24 N -0.485 5.485 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.024 0.976 28 H 0.003 0.997 29 H -0.029 1.029 30 H 0.265 0.735 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.155 0.845 34 H 0.178 0.822 35 H 0.158 0.842 36 H 0.127 0.873 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.066 -23.189 -1.364 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.269 5.269 3 C 0.085 3.915 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.194 4.194 7 N -0.573 5.573 8 Si 0.793 3.207 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.191 1.191 12 C -0.024 4.024 13 C -0.006 4.006 14 C -0.178 4.178 15 C -0.094 4.094 16 C -0.160 4.160 17 C 0.003 3.997 18 C 0.007 3.993 19 C -0.173 4.173 20 C -0.108 4.108 21 C -0.176 4.176 22 C -0.067 4.067 23 N -0.201 5.201 24 N -0.195 5.195 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.021 0.979 29 H -0.011 1.011 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.173 0.827 34 H 0.195 0.805 35 H 0.175 0.825 36 H 0.145 0.855 37 H 0.178 0.822 38 H 0.193 0.807 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -0.828 -23.220 -0.975 23.256 hybrid contribution -0.063 1.497 -0.100 1.501 sum -0.890 -21.724 -1.076 21.768 Atomic orbital electron populations 1.22218 0.87356 1.00745 1.00309 1.61938 1.08402 1.15419 1.41175 1.19379 0.93683 0.83152 0.95320 1.21403 1.35074 0.97505 1.02372 0.92279 1.25880 0.94945 0.97936 1.00664 1.70069 1.39184 1.11923 1.36165 0.85451 0.78903 0.77216 0.79135 1.19679 1.20563 1.19097 1.20900 1.00483 0.88212 0.92801 1.21030 0.91921 0.94829 0.92797 1.22324 0.97076 0.97380 1.01032 1.21956 0.99553 0.92402 0.95533 1.22309 0.94109 1.02516 0.97113 1.19590 0.94194 0.89303 0.96619 1.19363 0.93271 0.90281 0.96376 1.22270 0.95306 1.01906 0.97819 1.21977 0.99205 0.94285 0.95367 1.22663 0.98643 0.96008 1.00294 1.23373 0.90765 1.00644 0.91914 1.67435 1.32028 1.03865 1.16740 1.67167 1.32715 1.04581 1.15030 0.91375 0.92561 0.95793 0.97906 1.01123 0.92592 0.91321 0.92429 0.82703 0.80511 0.82480 0.85501 0.82250 0.80716 0.78931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 9.02 127.69 1.15 2.82 16 2 N -0.54 -24.95 4.74 -931.65 -4.42 -29.37 16 3 C 0.21 11.58 4.72 85.56 0.40 11.98 16 4 C -0.53 -30.67 8.46 25.60 0.22 -30.45 16 5 H 0.06 3.42 7.12 -2.91 -0.02 3.40 16 6 C 0.00 0.23 5.46 84.66 0.46 0.69 16 7 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 8 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 C 0.10 4.03 5.28 85.56 0.45 4.49 16 13 C 0.13 4.57 5.65 42.60 0.24 4.81 16 14 C -0.16 -4.11 8.33 22.41 0.19 -3.92 16 15 C -0.07 -1.49 10.17 22.44 0.23 -1.27 16 16 C -0.14 -3.57 9.61 22.58 0.22 -3.36 16 17 C 0.14 4.46 6.72 41.96 0.28 4.74 16 18 C 0.14 4.22 6.73 41.97 0.28 4.50 16 19 C -0.15 -4.29 9.61 22.58 0.22 -4.08 16 20 C -0.08 -1.65 10.17 22.44 0.23 -1.42 16 21 C -0.16 -2.35 10.11 22.41 0.23 -2.12 16 22 C 0.09 1.60 11.18 84.73 0.95 2.54 16 23 N -0.49 -12.29 9.40 -184.85 -1.74 -14.03 16 24 N -0.48 -17.70 9.32 -173.02 -1.61 -19.31 16 25 H 0.07 2.35 6.39 -2.39 -0.02 2.34 16 26 H 0.06 2.43 6.76 -2.39 -0.02 2.41 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.00 0.17 7.93 -2.39 -0.02 0.15 16 29 H -0.03 -1.67 8.12 -2.39 -0.02 -1.69 16 30 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.07 2.83 7.93 -2.39 -0.02 2.81 16 32 H 0.06 2.00 8.02 -2.39 -0.02 1.98 16 33 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 34 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.16 3.44 7.53 -2.91 -0.02 3.41 16 36 H 0.13 4.08 7.53 -2.91 -0.02 4.05 16 37 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.19 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -73.34 332.88 1.32 -72.02 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 1.04 Total: 10.17 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 5.74 Total: -10.04 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -7.49 Total: -119.27 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -73.34 1.32 -72.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237828259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.428 kcal (2) G-P(sol) polarization free energy of solvation -73.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds